data_7OKJ # _model_server_result.job_id 0jqMHwSRJbbY6VSdgDSHSg _model_server_result.datetime_utc '2024-11-14 04:48:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7OKJ # _exptl.entry_id 7OKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.83 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[[6-[(2-chloranyl-3-cyano-pyridin-4-yl)amino]-2-oxidanylidene-1H-quinolin-4-yl]amino]-N-methyl-propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKJ _cell.length_a 67.47 _cell.length_b 67.47 _cell.length_c 165.49 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_535 x,x-y-2,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 67.47 -116.861468 27.581667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H17 Cl N6 O2' _chem_comp.formula_weight 396.83 _chem_comp.id VHN _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[[6-[(2-chloranyl-3-cyano-pyridin-4-yl)amino]-2-oxidanylidene-1H-quinolin-4-yl]amino]-N-methyl-propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2S)-2-[[6-[(2-Chloro-3-cyanopyridin-4-yl)amino]-2-oxo-1H-quinolin-4-yl]amino]-N-methylpropanamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C VHN sing 385 n n N C VHN doub 386 n y N C1 VHN sing 387 n y C C4 VHN sing 388 n y C1 C2 VHN doub 389 n y C4 C5 VHN sing 390 n n C4 C3 VHN doub 391 n y C5 N1 VHN trip 392 n n C2 C3 VHN sing 393 n y C3 N2 VHN sing 394 n n N2 C6 VHN sing 395 n n C6 C11 VHN doub 396 n y C6 C7 VHN sing 397 n y O1 C16 VHN doub 398 n n C11 C10 VHN sing 399 n y C7 C8 VHN doub 400 n y C18 C15 VHN sing 401 n n N4 C15 VHN sing 402 n n N4 C12 VHN sing 403 n n C16 C15 VHN sing 404 n n C16 N5 VHN sing 405 n n C10 C12 VHN sing 406 n n C10 C9 VHN doub 407 n y C8 C9 VHN sing 408 n y C12 C13 VHN doub 409 n n C17 N5 VHN sing 410 n n C9 N3 VHN sing 411 n n C13 C14 VHN sing 412 n n N3 C14 VHN sing 413 n n C14 O VHN doub 414 n n C2 H1 VHN sing 415 n n C1 H2 VHN sing 416 n n N2 H3 VHN sing 417 n n C11 H4 VHN sing 418 n n N4 H5 VHN sing 419 n n C15 H6 VHN sing 420 n n C18 H7 VHN sing 421 n n C18 H8 VHN sing 422 n n C18 H9 VHN sing 423 n n N5 H10 VHN sing 424 n n C17 H11 VHN sing 425 n n C17 H12 VHN sing 426 n n C17 H13 VHN sing 427 n n C13 H14 VHN sing 428 n n N3 H15 VHN sing 429 n n C8 H16 VHN sing 430 n n C7 H17 VHN sing 431 n n # _atom_sites.entry_id 7OKJ _atom_sites.fract_transf_matrix[1][1] 0.014821 _atom_sites.fract_transf_matrix[1][2] 0.008557 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VHN A 1 201 200 VHN 458 . D 4 VHZ A 1 202 201 VHZ 457 . E 5 EDO A 1 203 2 EDO EDO . F 5 EDO A 1 204 3 EDO EDO . G 5 EDO A 1 205 4 EDO EDO . H 5 EDO A 1 206 5 EDO EDO . I 5 EDO A 1 207 6 EDO EDO . J 6 CL A 1 208 1 CL CL . K 6 CL A 1 209 2 CL CL . L 5 EDO B 1 101 1 EDO EDO . M 7 HOH A 1 301 131 HOH HOH . M 7 HOH A 2 302 240 HOH HOH . M 7 HOH A 3 303 101 HOH HOH . M 7 HOH A 4 304 219 HOH HOH . M 7 HOH A 5 305 198 HOH HOH . M 7 HOH A 6 306 165 HOH HOH . M 7 HOH A 7 307 68 HOH HOH . M 7 HOH A 8 308 102 HOH HOH . M 7 HOH A 9 309 183 HOH HOH . M 7 HOH A 10 310 206 HOH HOH . M 7 HOH A 11 311 10 HOH HOH . M 7 HOH A 12 312 96 HOH HOH . M 7 HOH A 13 313 110 HOH HOH . M 7 HOH A 14 314 24 HOH HOH . M 7 HOH A 15 315 56 HOH HOH . M 7 HOH A 16 316 34 HOH HOH . M 7 HOH A 17 317 99 HOH HOH . M 7 HOH A 18 318 12 HOH HOH . M 7 HOH A 19 319 135 HOH HOH . M 7 HOH A 20 320 226 HOH HOH . M 7 HOH A 21 321 100 HOH HOH . M 7 HOH A 22 322 63 HOH HOH . M 7 HOH A 23 323 220 HOH HOH . M 7 HOH A 24 324 200 HOH HOH . M 7 HOH A 25 325 222 HOH HOH . M 7 HOH A 26 326 158 HOH HOH . M 7 HOH A 27 327 32 HOH HOH . M 7 HOH A 28 328 31 HOH HOH . M 7 HOH A 29 329 107 HOH HOH . M 7 HOH A 30 330 11 HOH HOH . M 7 HOH A 31 331 119 HOH HOH . M 7 HOH A 32 332 203 HOH HOH . M 7 HOH A 33 333 69 HOH HOH . M 7 HOH A 34 334 111 HOH HOH . M 7 HOH A 35 335 89 HOH HOH . M 7 HOH A 36 336 187 HOH HOH . M 7 HOH A 37 337 93 HOH HOH . M 7 HOH A 38 338 184 HOH HOH . M 7 HOH A 39 339 21 HOH HOH . M 7 HOH A 40 340 16 HOH HOH . M 7 HOH A 41 341 53 HOH HOH . M 7 HOH A 42 342 47 HOH HOH . M 7 HOH A 43 343 35 HOH HOH . M 7 HOH A 44 344 60 HOH HOH . M 7 HOH A 45 345 148 HOH HOH . M 7 HOH A 46 346 13 HOH HOH . M 7 HOH A 47 347 29 HOH HOH . M 7 HOH A 48 348 23 HOH HOH . M 7 HOH A 49 349 75 HOH HOH . M 7 HOH A 50 350 2 HOH HOH . M 7 HOH A 51 351 104 HOH HOH . M 7 HOH A 52 352 50 HOH HOH . M 7 HOH A 53 353 61 HOH HOH . M 7 HOH A 54 354 41 HOH HOH . M 7 HOH A 55 355 79 HOH HOH . M 7 HOH A 56 356 54 HOH HOH . M 7 HOH A 57 357 129 HOH HOH . M 7 HOH A 58 358 221 HOH HOH . M 7 HOH A 59 359 36 HOH HOH . M 7 HOH A 60 360 212 HOH HOH . M 7 HOH A 61 361 17 HOH HOH . M 7 HOH A 62 362 3 HOH HOH . M 7 HOH A 63 363 205 HOH HOH . M 7 HOH A 64 364 144 HOH HOH . M 7 HOH A 65 365 196 HOH HOH . M 7 HOH A 66 366 121 HOH HOH . M 7 HOH A 67 367 114 HOH HOH . M 7 HOH A 68 368 42 HOH HOH . M 7 HOH A 69 369 127 HOH HOH . M 7 HOH A 70 370 6 HOH HOH . M 7 HOH A 71 371 4 HOH HOH . M 7 HOH A 72 372 65 HOH HOH . M 7 HOH A 73 373 14 HOH HOH . M 7 HOH A 74 374 52 HOH HOH . M 7 HOH A 75 375 210 HOH HOH . M 7 HOH A 76 376 217 HOH HOH . M 7 HOH A 77 377 33 HOH HOH . M 7 HOH A 78 378 236 HOH HOH . M 7 HOH A 79 379 94 HOH HOH . M 7 HOH A 80 380 193 HOH HOH . M 7 HOH A 81 381 40 HOH HOH . M 7 HOH A 82 382 176 HOH HOH . M 7 HOH A 83 383 117 HOH HOH . M 7 HOH A 84 384 90 HOH HOH . M 7 HOH A 85 385 43 HOH HOH . M 7 HOH A 86 386 7 HOH HOH . M 7 HOH A 87 387 98 HOH HOH . M 7 HOH A 88 388 209 HOH HOH . M 7 HOH A 89 389 105 HOH HOH . M 7 HOH A 90 390 76 HOH HOH . M 7 HOH A 91 391 199 HOH HOH . M 7 HOH A 92 392 49 HOH HOH . M 7 HOH A 93 393 78 HOH HOH . M 7 HOH A 94 394 152 HOH HOH . M 7 HOH A 95 395 38 HOH HOH . M 7 HOH A 96 396 83 HOH HOH . M 7 HOH A 97 397 103 HOH HOH . M 7 HOH A 98 398 37 HOH HOH . M 7 HOH A 99 399 241 HOH HOH . M 7 HOH A 100 400 218 HOH HOH . M 7 HOH A 101 401 27 HOH HOH . M 7 HOH A 102 402 142 HOH HOH . M 7 HOH A 103 403 232 HOH HOH . M 7 HOH A 104 404 124 HOH HOH . M 7 HOH A 105 405 202 HOH HOH . M 7 HOH A 106 406 112 HOH HOH . M 7 HOH A 107 407 154 HOH HOH . M 7 HOH A 108 408 186 HOH HOH . M 7 HOH A 109 409 57 HOH HOH . M 7 HOH A 110 410 163 HOH HOH . M 7 HOH A 111 411 64 HOH HOH . M 7 HOH A 112 412 8 HOH HOH . M 7 HOH A 113 413 141 HOH HOH . M 7 HOH A 114 414 92 HOH HOH . M 7 HOH A 115 415 231 HOH HOH . M 7 HOH A 116 416 207 HOH HOH . M 7 HOH A 117 417 45 HOH HOH . M 7 HOH A 118 418 73 HOH HOH . M 7 HOH A 119 419 151 HOH HOH . M 7 HOH A 120 420 179 HOH HOH . M 7 HOH A 121 421 185 HOH HOH . M 7 HOH A 122 422 194 HOH HOH . M 7 HOH A 123 423 120 HOH HOH . M 7 HOH A 124 424 197 HOH HOH . M 7 HOH A 125 425 70 HOH HOH . M 7 HOH A 126 426 46 HOH HOH . M 7 HOH A 127 427 48 HOH HOH . M 7 HOH A 128 428 242 HOH HOH . M 7 HOH A 129 429 77 HOH HOH . M 7 HOH A 130 430 51 HOH HOH . M 7 HOH A 131 431 224 HOH HOH . M 7 HOH A 132 432 85 HOH HOH . M 7 HOH A 133 433 168 HOH HOH . M 7 HOH A 134 434 39 HOH HOH . M 7 HOH A 135 435 133 HOH HOH . M 7 HOH A 136 436 95 HOH HOH . M 7 HOH A 137 437 181 HOH HOH . M 7 HOH A 138 438 157 HOH HOH . M 7 HOH A 139 439 74 HOH HOH . M 7 HOH A 140 440 125 HOH HOH . M 7 HOH A 141 441 171 HOH HOH . M 7 HOH A 142 442 223 HOH HOH . M 7 HOH A 143 443 208 HOH HOH . M 7 HOH A 144 444 128 HOH HOH . M 7 HOH A 145 445 233 HOH HOH . M 7 HOH A 146 446 140 HOH HOH . M 7 HOH A 147 447 123 HOH HOH . M 7 HOH A 148 448 146 HOH HOH . M 7 HOH A 149 449 213 HOH HOH . M 7 HOH A 150 450 108 HOH HOH . M 7 HOH A 151 451 195 HOH HOH . M 7 HOH A 152 452 227 HOH HOH . M 7 HOH A 153 453 91 HOH HOH . M 7 HOH A 154 454 149 HOH HOH . M 7 HOH A 155 455 67 HOH HOH . M 7 HOH A 156 456 174 HOH HOH . M 7 HOH A 157 457 81 HOH HOH . M 7 HOH A 158 458 143 HOH HOH . M 7 HOH A 159 459 122 HOH HOH . M 7 HOH A 160 460 113 HOH HOH . M 7 HOH A 161 461 159 HOH HOH . M 7 HOH A 162 462 87 HOH HOH . M 7 HOH A 163 463 130 HOH HOH . M 7 HOH A 164 464 145 HOH HOH . M 7 HOH A 165 465 235 HOH HOH . M 7 HOH A 166 466 109 HOH HOH . M 7 HOH A 167 467 234 HOH HOH . M 7 HOH A 168 468 239 HOH HOH . M 7 HOH A 169 469 238 HOH HOH . M 7 HOH A 170 470 116 HOH HOH . M 7 HOH A 171 471 137 HOH HOH . M 7 HOH A 172 472 155 HOH HOH . M 7 HOH A 173 473 138 HOH HOH . M 7 HOH A 174 474 180 HOH HOH . M 7 HOH A 175 475 244 HOH HOH . M 7 HOH A 176 476 189 HOH HOH . M 7 HOH A 177 477 216 HOH HOH . M 7 HOH A 178 478 177 HOH HOH . M 7 HOH A 179 479 118 HOH HOH . M 7 HOH A 180 480 192 HOH HOH . M 7 HOH A 181 481 182 HOH HOH . M 7 HOH A 182 482 188 HOH HOH . M 7 HOH A 183 483 170 HOH HOH . M 7 HOH A 184 484 126 HOH HOH . M 7 HOH A 185 485 175 HOH HOH . M 7 HOH A 186 486 237 HOH HOH . M 7 HOH A 187 487 190 HOH HOH . M 7 HOH A 188 488 191 HOH HOH . M 7 HOH A 189 489 156 HOH HOH . M 7 HOH A 190 490 228 HOH HOH . M 7 HOH A 191 491 243 HOH HOH . M 7 HOH A 192 492 229 HOH HOH . N 7 HOH B 1 201 225 HOH HOH . N 7 HOH B 2 202 82 HOH HOH . N 7 HOH B 3 203 214 HOH HOH . N 7 HOH B 4 204 44 HOH HOH . N 7 HOH B 5 205 30 HOH HOH . N 7 HOH B 6 206 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL VHN . A . C 3 95.388 -9.816 10.701 0.29 17.55 ? CL VHN 201 A 1 HETATM 2 C C VHN . A . C 3 94.197 -9.607 11.937 0.66 17.76 ? C VHN 201 A 1 HETATM 3 C C4 VHN . A . C 3 94.504 -10.009 13.232 0.66 17.16 ? C4 VHN 201 A 1 HETATM 4 C C5 VHN . A . C 3 95.755 -10.624 13.556 0.66 17.04 ? C5 VHN 201 A 1 HETATM 5 N N1 VHN . A . C 3 96.76 -11.109 13.76 0.66 17.16 ? N1 VHN 201 A 1 HETATM 6 C C3 VHN . A . C 3 93.524 -9.805 14.228 0.66 17.47 ? C3 VHN 201 A 1 HETATM 7 C C2 VHN . A . C 3 92.319 -9.227 13.839 0.66 18.34 ? C2 VHN 201 A 1 HETATM 8 C C1 VHN . A . C 3 92.141 -8.88 12.517 0.66 18.41 ? C1 VHN 201 A 1 HETATM 9 N N VHN . A . C 3 93.061 -9.06 11.567 0.66 18.17 ? N VHN 201 A 1 HETATM 10 N N2 VHN . A . C 3 93.746 -10.152 15.546 0.66 17.14 ? N2 VHN 201 A 1 HETATM 11 C C6 VHN . A . C 3 92.767 -10.156 16.557 0.66 17.02 ? C6 VHN 201 A 1 HETATM 12 C C11 VHN . A . C 3 92.123 -8.99 16.955 0.66 17.9 ? C11 VHN 201 A 1 HETATM 13 C C10 VHN . A . C 3 91.153 -9.036 17.955 0.66 18.82 ? C10 VHN 201 A 1 HETATM 14 C C12 VHN . A . C 3 90.429 -7.845 18.423 0.66 21.11 ? C12 VHN 201 A 1 HETATM 15 N N4 VHN . A . C 3 90.717 -6.667 17.857 0.66 23.65 ? N4 VHN 201 A 1 HETATM 16 C C15 VHN . A . C 3 90.087 -5.441 18.311 0.66 26.34 ? C15 VHN 201 A 1 HETATM 17 C C18 VHN . A . C 3 90.856 -4.233 17.805 0.66 26.87 ? C18 VHN 201 A 1 HETATM 18 C C16 VHN . A . C 3 88.634 -5.363 17.857 0.66 28.26 ? C16 VHN 201 A 1 HETATM 19 N N5 VHN . A . C 3 87.779 -4.851 18.73 0.66 29.37 ? N5 VHN 201 A 1 HETATM 20 C C17 VHN . A . C 3 86.349 -4.833 18.489 0.66 29.93 ? C17 VHN 201 A 1 HETATM 21 O O1 VHN . A . C 3 88.302 -5.759 16.747 0.66 29.36 ? O1 VHN 201 A 1 HETATM 22 C C13 VHN . A . C 3 89.494 -7.96 19.41 0.66 20.59 ? C13 VHN 201 A 1 HETATM 23 C C14 VHN . A . C 3 89.176 -9.222 20.019 0.66 19.75 ? C14 VHN 201 A 1 HETATM 24 O O VHN . A . C 3 88.334 -9.363 20.913 0.66 20.16 ? O VHN 201 A 1 HETATM 25 N N3 VHN . A . C 3 89.869 -10.304 19.552 0.66 18.5 ? N3 VHN 201 A 1 HETATM 26 C C9 VHN . A . C 3 90.834 -10.26 18.555 0.66 18.22 ? C9 VHN 201 A 1 HETATM 27 C C8 VHN . A . C 3 91.484 -11.415 18.15 0.66 17.12 ? C8 VHN 201 A 1 HETATM 28 C C7 VHN . A . C 3 92.443 -11.362 17.159 0.66 16.82 ? C7 VHN 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #