data_7OKJ
#
_model_server_result.job_id            7-iu3mUqUzusKZTse3_IKw 
_model_server_result.datetime_utc      '2024-12-18 08:25:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7okj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    7OKJ 
#
_exptl.entry_id    7OKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7OKJ 
_cell.length_a            67.47 
_cell.length_b            67.47 
_cell.length_c            165.49 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_535 x,x-y-2,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 67.47 -116.861468 27.581667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 L N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7OKJ 
_atom_sites.fract_transf_matrix[1][1]    0.014821 
_atom_sites.fract_transf_matrix[1][2]    0.008557 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017114 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006043 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VHN A 1 201 200 VHN 458 . 
D 4 VHZ A 1 202 201 VHZ 457 . 
E 5 EDO A 1 203 2 EDO EDO . 
F 5 EDO A 1 204 3 EDO EDO . 
G 5 EDO A 1 205 4 EDO EDO . 
H 5 EDO A 1 206 5 EDO EDO . 
I 5 EDO A 1 207 6 EDO EDO . 
J 6 CL A 1 208 1 CL CL . 
K 6 CL A 1 209 2 CL CL . 
L 5 EDO B 1 101 1 EDO EDO . 
M 7 HOH A 1 301 131 HOH HOH . 
M 7 HOH A 2 302 240 HOH HOH . 
M 7 HOH A 3 303 101 HOH HOH . 
M 7 HOH A 4 304 219 HOH HOH . 
M 7 HOH A 5 305 198 HOH HOH . 
M 7 HOH A 6 306 165 HOH HOH . 
M 7 HOH A 7 307 68 HOH HOH . 
M 7 HOH A 8 308 102 HOH HOH . 
M 7 HOH A 9 309 183 HOH HOH . 
M 7 HOH A 10 310 206 HOH HOH . 
M 7 HOH A 11 311 10 HOH HOH . 
M 7 HOH A 12 312 96 HOH HOH . 
M 7 HOH A 13 313 110 HOH HOH . 
M 7 HOH A 14 314 24 HOH HOH . 
M 7 HOH A 15 315 56 HOH HOH . 
M 7 HOH A 16 316 34 HOH HOH . 
M 7 HOH A 17 317 99 HOH HOH . 
M 7 HOH A 18 318 12 HOH HOH . 
M 7 HOH A 19 319 135 HOH HOH . 
M 7 HOH A 20 320 226 HOH HOH . 
M 7 HOH A 21 321 100 HOH HOH . 
M 7 HOH A 22 322 63 HOH HOH . 
M 7 HOH A 23 323 220 HOH HOH . 
M 7 HOH A 24 324 200 HOH HOH . 
M 7 HOH A 25 325 222 HOH HOH . 
M 7 HOH A 26 326 158 HOH HOH . 
M 7 HOH A 27 327 32 HOH HOH . 
M 7 HOH A 28 328 31 HOH HOH . 
M 7 HOH A 29 329 107 HOH HOH . 
M 7 HOH A 30 330 11 HOH HOH . 
M 7 HOH A 31 331 119 HOH HOH . 
M 7 HOH A 32 332 203 HOH HOH . 
M 7 HOH A 33 333 69 HOH HOH . 
M 7 HOH A 34 334 111 HOH HOH . 
M 7 HOH A 35 335 89 HOH HOH . 
M 7 HOH A 36 336 187 HOH HOH . 
M 7 HOH A 37 337 93 HOH HOH . 
M 7 HOH A 38 338 184 HOH HOH . 
M 7 HOH A 39 339 21 HOH HOH . 
M 7 HOH A 40 340 16 HOH HOH . 
M 7 HOH A 41 341 53 HOH HOH . 
M 7 HOH A 42 342 47 HOH HOH . 
M 7 HOH A 43 343 35 HOH HOH . 
M 7 HOH A 44 344 60 HOH HOH . 
M 7 HOH A 45 345 148 HOH HOH . 
M 7 HOH A 46 346 13 HOH HOH . 
M 7 HOH A 47 347 29 HOH HOH . 
M 7 HOH A 48 348 23 HOH HOH . 
M 7 HOH A 49 349 75 HOH HOH . 
M 7 HOH A 50 350 2 HOH HOH . 
M 7 HOH A 51 351 104 HOH HOH . 
M 7 HOH A 52 352 50 HOH HOH . 
M 7 HOH A 53 353 61 HOH HOH . 
M 7 HOH A 54 354 41 HOH HOH . 
M 7 HOH A 55 355 79 HOH HOH . 
M 7 HOH A 56 356 54 HOH HOH . 
M 7 HOH A 57 357 129 HOH HOH . 
M 7 HOH A 58 358 221 HOH HOH . 
M 7 HOH A 59 359 36 HOH HOH . 
M 7 HOH A 60 360 212 HOH HOH . 
M 7 HOH A 61 361 17 HOH HOH . 
M 7 HOH A 62 362 3 HOH HOH . 
M 7 HOH A 63 363 205 HOH HOH . 
M 7 HOH A 64 364 144 HOH HOH . 
M 7 HOH A 65 365 196 HOH HOH . 
M 7 HOH A 66 366 121 HOH HOH . 
M 7 HOH A 67 367 114 HOH HOH . 
M 7 HOH A 68 368 42 HOH HOH . 
M 7 HOH A 69 369 127 HOH HOH . 
M 7 HOH A 70 370 6 HOH HOH . 
M 7 HOH A 71 371 4 HOH HOH . 
M 7 HOH A 72 372 65 HOH HOH . 
M 7 HOH A 73 373 14 HOH HOH . 
M 7 HOH A 74 374 52 HOH HOH . 
M 7 HOH A 75 375 210 HOH HOH . 
M 7 HOH A 76 376 217 HOH HOH . 
M 7 HOH A 77 377 33 HOH HOH . 
M 7 HOH A 78 378 236 HOH HOH . 
M 7 HOH A 79 379 94 HOH HOH . 
M 7 HOH A 80 380 193 HOH HOH . 
M 7 HOH A 81 381 40 HOH HOH . 
M 7 HOH A 82 382 176 HOH HOH . 
M 7 HOH A 83 383 117 HOH HOH . 
M 7 HOH A 84 384 90 HOH HOH . 
M 7 HOH A 85 385 43 HOH HOH . 
M 7 HOH A 86 386 7 HOH HOH . 
M 7 HOH A 87 387 98 HOH HOH . 
M 7 HOH A 88 388 209 HOH HOH . 
M 7 HOH A 89 389 105 HOH HOH . 
M 7 HOH A 90 390 76 HOH HOH . 
M 7 HOH A 91 391 199 HOH HOH . 
M 7 HOH A 92 392 49 HOH HOH . 
M 7 HOH A 93 393 78 HOH HOH . 
M 7 HOH A 94 394 152 HOH HOH . 
M 7 HOH A 95 395 38 HOH HOH . 
M 7 HOH A 96 396 83 HOH HOH . 
M 7 HOH A 97 397 103 HOH HOH . 
M 7 HOH A 98 398 37 HOH HOH . 
M 7 HOH A 99 399 241 HOH HOH . 
M 7 HOH A 100 400 218 HOH HOH . 
M 7 HOH A 101 401 27 HOH HOH . 
M 7 HOH A 102 402 142 HOH HOH . 
M 7 HOH A 103 403 232 HOH HOH . 
M 7 HOH A 104 404 124 HOH HOH . 
M 7 HOH A 105 405 202 HOH HOH . 
M 7 HOH A 106 406 112 HOH HOH . 
M 7 HOH A 107 407 154 HOH HOH . 
M 7 HOH A 108 408 186 HOH HOH . 
M 7 HOH A 109 409 57 HOH HOH . 
M 7 HOH A 110 410 163 HOH HOH . 
M 7 HOH A 111 411 64 HOH HOH . 
M 7 HOH A 112 412 8 HOH HOH . 
M 7 HOH A 113 413 141 HOH HOH . 
M 7 HOH A 114 414 92 HOH HOH . 
M 7 HOH A 115 415 231 HOH HOH . 
M 7 HOH A 116 416 207 HOH HOH . 
M 7 HOH A 117 417 45 HOH HOH . 
M 7 HOH A 118 418 73 HOH HOH . 
M 7 HOH A 119 419 151 HOH HOH . 
M 7 HOH A 120 420 179 HOH HOH . 
M 7 HOH A 121 421 185 HOH HOH . 
M 7 HOH A 122 422 194 HOH HOH . 
M 7 HOH A 123 423 120 HOH HOH . 
M 7 HOH A 124 424 197 HOH HOH . 
M 7 HOH A 125 425 70 HOH HOH . 
M 7 HOH A 126 426 46 HOH HOH . 
M 7 HOH A 127 427 48 HOH HOH . 
M 7 HOH A 128 428 242 HOH HOH . 
M 7 HOH A 129 429 77 HOH HOH . 
M 7 HOH A 130 430 51 HOH HOH . 
M 7 HOH A 131 431 224 HOH HOH . 
M 7 HOH A 132 432 85 HOH HOH . 
M 7 HOH A 133 433 168 HOH HOH . 
M 7 HOH A 134 434 39 HOH HOH . 
M 7 HOH A 135 435 133 HOH HOH . 
M 7 HOH A 136 436 95 HOH HOH . 
M 7 HOH A 137 437 181 HOH HOH . 
M 7 HOH A 138 438 157 HOH HOH . 
M 7 HOH A 139 439 74 HOH HOH . 
M 7 HOH A 140 440 125 HOH HOH . 
M 7 HOH A 141 441 171 HOH HOH . 
M 7 HOH A 142 442 223 HOH HOH . 
M 7 HOH A 143 443 208 HOH HOH . 
M 7 HOH A 144 444 128 HOH HOH . 
M 7 HOH A 145 445 233 HOH HOH . 
M 7 HOH A 146 446 140 HOH HOH . 
M 7 HOH A 147 447 123 HOH HOH . 
M 7 HOH A 148 448 146 HOH HOH . 
M 7 HOH A 149 449 213 HOH HOH . 
M 7 HOH A 150 450 108 HOH HOH . 
M 7 HOH A 151 451 195 HOH HOH . 
M 7 HOH A 152 452 227 HOH HOH . 
M 7 HOH A 153 453 91 HOH HOH . 
M 7 HOH A 154 454 149 HOH HOH . 
M 7 HOH A 155 455 67 HOH HOH . 
M 7 HOH A 156 456 174 HOH HOH . 
M 7 HOH A 157 457 81 HOH HOH . 
M 7 HOH A 158 458 143 HOH HOH . 
M 7 HOH A 159 459 122 HOH HOH . 
M 7 HOH A 160 460 113 HOH HOH . 
M 7 HOH A 161 461 159 HOH HOH . 
M 7 HOH A 162 462 87 HOH HOH . 
M 7 HOH A 163 463 130 HOH HOH . 
M 7 HOH A 164 464 145 HOH HOH . 
M 7 HOH A 165 465 235 HOH HOH . 
M 7 HOH A 166 466 109 HOH HOH . 
M 7 HOH A 167 467 234 HOH HOH . 
M 7 HOH A 168 468 239 HOH HOH . 
M 7 HOH A 169 469 238 HOH HOH . 
M 7 HOH A 170 470 116 HOH HOH . 
M 7 HOH A 171 471 137 HOH HOH . 
M 7 HOH A 172 472 155 HOH HOH . 
M 7 HOH A 173 473 138 HOH HOH . 
M 7 HOH A 174 474 180 HOH HOH . 
M 7 HOH A 175 475 244 HOH HOH . 
M 7 HOH A 176 476 189 HOH HOH . 
M 7 HOH A 177 477 216 HOH HOH . 
M 7 HOH A 178 478 177 HOH HOH . 
M 7 HOH A 179 479 118 HOH HOH . 
M 7 HOH A 180 480 192 HOH HOH . 
M 7 HOH A 181 481 182 HOH HOH . 
M 7 HOH A 182 482 188 HOH HOH . 
M 7 HOH A 183 483 170 HOH HOH . 
M 7 HOH A 184 484 126 HOH HOH . 
M 7 HOH A 185 485 175 HOH HOH . 
M 7 HOH A 186 486 237 HOH HOH . 
M 7 HOH A 187 487 190 HOH HOH . 
M 7 HOH A 188 488 191 HOH HOH . 
M 7 HOH A 189 489 156 HOH HOH . 
M 7 HOH A 190 490 228 HOH HOH . 
M 7 HOH A 191 491 243 HOH HOH . 
M 7 HOH A 192 492 229 HOH HOH . 
N 7 HOH B 1 201 225 HOH HOH . 
N 7 HOH B 2 202 82 HOH HOH . 
N 7 HOH B 3 203 214 HOH HOH . 
N 7 HOH B 4 204 44 HOH HOH . 
N 7 HOH B 5 205 30 HOH HOH . 
N 7 HOH B 6 206 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 5 93.865 -3.048 32.698 0.86 46.76 ? C1 EDO 205 A 1 
HETATM 2 O O1 EDO . . . G 5 94.931 -2.993 33.629 0.86 46.89 ? O1 EDO 205 A 1 
HETATM 3 C C2 EDO . . . G 5 93.538 -1.622 32.216 0.86 46.57 ? C2 EDO 205 A 1 
HETATM 4 O O2 EDO . . . G 5 93.897 -1.466 30.851 0.86 46.39 ? O2 EDO 205 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#