data_7OKK # _model_server_result.job_id iJdnU3-Q5MvlhpEMUccEvw _model_server_result.datetime_utc '2024-10-19 14:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 7OKK # _exptl.entry_id 7OKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKK _cell.length_a 67.351 _cell.length_b 67.351 _cell.length_c 164.498 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -27.416333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7OKK _atom_sites.fract_transf_matrix[1][1] 0.014848 _atom_sites.fract_transf_matrix[1][2] 0.008572 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VH8 A 1 201 201 VH8 375 . D 4 EDO A 1 202 1 EDO EDO . E 4 EDO A 1 203 2 EDO EDO . F 4 EDO A 1 204 3 EDO EDO . G 5 CL A 1 205 1 CL CL . H 6 HOH A 1 301 10 HOH HOH . H 6 HOH A 2 302 92 HOH HOH . H 6 HOH A 3 303 36 HOH HOH . H 6 HOH A 4 304 21 HOH HOH . H 6 HOH A 5 305 24 HOH HOH . H 6 HOH A 6 306 47 HOH HOH . H 6 HOH A 7 307 5 HOH HOH . H 6 HOH A 8 308 141 HOH HOH . H 6 HOH A 9 309 57 HOH HOH . H 6 HOH A 10 310 116 HOH HOH . H 6 HOH A 11 311 3 HOH HOH . H 6 HOH A 12 312 22 HOH HOH . H 6 HOH A 13 313 93 HOH HOH . H 6 HOH A 14 314 15 HOH HOH . H 6 HOH A 15 315 99 HOH HOH . H 6 HOH A 16 316 118 HOH HOH . H 6 HOH A 17 317 11 HOH HOH . H 6 HOH A 18 318 91 HOH HOH . H 6 HOH A 19 319 55 HOH HOH . H 6 HOH A 20 320 8 HOH HOH . H 6 HOH A 21 321 65 HOH HOH . H 6 HOH A 22 322 25 HOH HOH . H 6 HOH A 23 323 112 HOH HOH . H 6 HOH A 24 324 18 HOH HOH . H 6 HOH A 25 325 115 HOH HOH . H 6 HOH A 26 326 58 HOH HOH . H 6 HOH A 27 327 85 HOH HOH . H 6 HOH A 28 328 53 HOH HOH . H 6 HOH A 29 329 9 HOH HOH . H 6 HOH A 30 330 4 HOH HOH . H 6 HOH A 31 331 31 HOH HOH . H 6 HOH A 32 332 108 HOH HOH . H 6 HOH A 33 333 1 HOH HOH . H 6 HOH A 34 334 7 HOH HOH . H 6 HOH A 35 335 17 HOH HOH . H 6 HOH A 36 336 30 HOH HOH . H 6 HOH A 37 337 63 HOH HOH . H 6 HOH A 38 338 34 HOH HOH . H 6 HOH A 39 339 29 HOH HOH . H 6 HOH A 40 340 13 HOH HOH . H 6 HOH A 41 341 6 HOH HOH . H 6 HOH A 42 342 39 HOH HOH . H 6 HOH A 43 343 72 HOH HOH . H 6 HOH A 44 344 2 HOH HOH . H 6 HOH A 45 345 51 HOH HOH . H 6 HOH A 46 346 59 HOH HOH . H 6 HOH A 47 347 64 HOH HOH . H 6 HOH A 48 348 67 HOH HOH . H 6 HOH A 49 349 12 HOH HOH . H 6 HOH A 50 350 74 HOH HOH . H 6 HOH A 51 351 56 HOH HOH . H 6 HOH A 52 352 117 HOH HOH . H 6 HOH A 53 353 62 HOH HOH . H 6 HOH A 54 354 46 HOH HOH . H 6 HOH A 55 355 79 HOH HOH . H 6 HOH A 56 356 88 HOH HOH . H 6 HOH A 57 357 107 HOH HOH . H 6 HOH A 58 358 37 HOH HOH . H 6 HOH A 59 359 73 HOH HOH . H 6 HOH A 60 360 122 HOH HOH . H 6 HOH A 61 361 75 HOH HOH . H 6 HOH A 62 362 81 HOH HOH . H 6 HOH A 63 363 14 HOH HOH . H 6 HOH A 64 364 60 HOH HOH . H 6 HOH A 65 365 28 HOH HOH . H 6 HOH A 66 366 70 HOH HOH . H 6 HOH A 67 367 104 HOH HOH . H 6 HOH A 68 368 27 HOH HOH . H 6 HOH A 69 369 96 HOH HOH . H 6 HOH A 70 370 84 HOH HOH . H 6 HOH A 71 371 97 HOH HOH . H 6 HOH A 72 372 23 HOH HOH . H 6 HOH A 73 373 38 HOH HOH . H 6 HOH A 74 374 69 HOH HOH . H 6 HOH A 75 375 114 HOH HOH . H 6 HOH A 76 376 101 HOH HOH . H 6 HOH A 77 377 42 HOH HOH . H 6 HOH A 78 378 20 HOH HOH . H 6 HOH A 79 379 105 HOH HOH . H 6 HOH A 80 380 16 HOH HOH . H 6 HOH A 81 381 54 HOH HOH . H 6 HOH A 82 382 48 HOH HOH . H 6 HOH A 83 383 45 HOH HOH . H 6 HOH A 84 384 109 HOH HOH . H 6 HOH A 85 385 50 HOH HOH . H 6 HOH A 86 386 127 HOH HOH . H 6 HOH A 87 387 80 HOH HOH . H 6 HOH A 88 388 139 HOH HOH . H 6 HOH A 89 389 87 HOH HOH . H 6 HOH A 90 390 41 HOH HOH . H 6 HOH A 91 391 82 HOH HOH . H 6 HOH A 92 392 19 HOH HOH . H 6 HOH A 93 393 33 HOH HOH . H 6 HOH A 94 394 86 HOH HOH . H 6 HOH A 95 395 123 HOH HOH . H 6 HOH A 96 396 110 HOH HOH . H 6 HOH A 97 397 71 HOH HOH . H 6 HOH A 98 398 95 HOH HOH . H 6 HOH A 99 399 32 HOH HOH . H 6 HOH A 100 400 40 HOH HOH . H 6 HOH A 101 401 43 HOH HOH . H 6 HOH A 102 402 76 HOH HOH . H 6 HOH A 103 403 68 HOH HOH . H 6 HOH A 104 404 120 HOH HOH . H 6 HOH A 105 405 135 HOH HOH . H 6 HOH A 106 406 44 HOH HOH . H 6 HOH A 107 407 125 HOH HOH . H 6 HOH A 108 408 90 HOH HOH . H 6 HOH A 109 409 111 HOH HOH . H 6 HOH A 110 410 131 HOH HOH . H 6 HOH A 111 411 143 HOH HOH . H 6 HOH A 112 412 134 HOH HOH . H 6 HOH A 113 413 128 HOH HOH . H 6 HOH A 114 414 100 HOH HOH . H 6 HOH A 115 415 142 HOH HOH . H 6 HOH A 116 416 140 HOH HOH . H 6 HOH A 117 417 52 HOH HOH . H 6 HOH A 118 418 144 HOH HOH . H 6 HOH A 119 419 119 HOH HOH . H 6 HOH A 120 420 132 HOH HOH . H 6 HOH A 121 421 133 HOH HOH . H 6 HOH A 122 422 113 HOH HOH . H 6 HOH A 123 423 138 HOH HOH . H 6 HOH A 124 424 136 HOH HOH . H 6 HOH A 125 425 145 HOH HOH . H 6 HOH A 126 426 121 HOH HOH . H 6 HOH A 127 427 126 HOH HOH . I 6 HOH B 1 101 83 HOH HOH . I 6 HOH B 2 102 35 HOH HOH . I 6 HOH B 3 103 94 HOH HOH . I 6 HOH B 4 104 26 HOH HOH . I 6 HOH B 5 105 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 38.829 -37.544 13.511 1 64.36 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . E 4 38.685 -36.266 14.104 1 64.48 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . E 4 40.071 -37.534 12.595 1 64.32 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . E 4 40.22 -38.804 11.996 1 64.38 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #