data_7OKT # _model_server_result.job_id MxFrd3DwH90xVMsc1PIlDw _model_server_result.datetime_utc '2024-11-24 03:59:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 7OKT # _exptl.entry_id 7OKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OKT _cell.length_a 75.295 _cell.length_b 91.602 _cell.length_c 123.36 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,L 1 1 B,C,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG B 201 NAG 2 n C FUC 2 C 2 FUC B 205 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 B SG CYS 103 B CYS 101 1_555 B SG CYS 171 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 D C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 49 A ASN 47 1_555 G C1 NAG . A NAG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale3 A ND2 ASN 121 A ASN 119 1_555 E C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 32 B ASN 30 1_555 J C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 49 B ASN 47 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 B ND2 ASN 121 B ASN 119 1_555 I C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7OKT _atom_sites.fract_transf_matrix[1][1] 0.013281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 201 201 NAG NAG . E 3 NAG A 1 202 202 NAG NAG . F 4 EDO A 1 203 212 EDO EDO . G 3 NAG A 1 204 213 NAG NAG . H 5 PTY A 1 205 214 PTY PTY . I 3 NAG B 1 201 202 NAG NAG . J 3 NAG B 1 202 207 NAG NAG . K 5 PTY B 1 203 208 PTY PTY . L 6 HOH A 1 301 86 HOH HOH . L 6 HOH A 2 302 16 HOH HOH . L 6 HOH A 3 303 1 HOH HOH . L 6 HOH A 4 304 21 HOH HOH . L 6 HOH A 5 305 34 HOH HOH . L 6 HOH A 6 306 37 HOH HOH . L 6 HOH A 7 307 54 HOH HOH . L 6 HOH A 8 308 8 HOH HOH . L 6 HOH A 9 309 151 HOH HOH . L 6 HOH A 10 310 20 HOH HOH . L 6 HOH A 11 311 57 HOH HOH . L 6 HOH A 12 312 58 HOH HOH . L 6 HOH A 13 313 139 HOH HOH . L 6 HOH A 14 314 14 HOH HOH . L 6 HOH A 15 315 49 HOH HOH . L 6 HOH A 16 316 12 HOH HOH . L 6 HOH A 17 317 113 HOH HOH . L 6 HOH A 18 318 16 HOH HOH . L 6 HOH A 19 319 22 HOH HOH . L 6 HOH A 20 320 99 HOH HOH . L 6 HOH A 21 321 31 HOH HOH . L 6 HOH A 22 322 97 HOH HOH . L 6 HOH A 23 323 207 HOH HOH . L 6 HOH A 24 324 6 HOH HOH . L 6 HOH A 25 325 156 HOH HOH . L 6 HOH A 26 326 24 HOH HOH . L 6 HOH A 27 327 31 HOH HOH . L 6 HOH A 28 328 10 HOH HOH . L 6 HOH A 29 329 40 HOH HOH . L 6 HOH A 30 330 20 HOH HOH . L 6 HOH A 31 331 3 HOH HOH . L 6 HOH A 32 332 63 HOH HOH . L 6 HOH A 33 333 62 HOH HOH . L 6 HOH A 34 334 45 HOH HOH . L 6 HOH A 35 335 24 HOH HOH . L 6 HOH A 36 336 17 HOH HOH . L 6 HOH A 37 337 3 HOH HOH . L 6 HOH A 38 338 12 HOH HOH . L 6 HOH A 39 339 141 HOH HOH . L 6 HOH A 40 340 99 HOH HOH . L 6 HOH A 41 341 136 HOH HOH . L 6 HOH A 42 342 1 HOH HOH . L 6 HOH A 43 343 29 HOH HOH . L 6 HOH A 44 344 54 HOH HOH . L 6 HOH A 45 345 100 HOH HOH . L 6 HOH A 46 346 39 HOH HOH . L 6 HOH A 47 347 12 HOH HOH . L 6 HOH A 48 348 223 HOH HOH . L 6 HOH A 49 349 51 HOH HOH . L 6 HOH A 50 350 65 HOH HOH . L 6 HOH A 51 351 18 HOH HOH . L 6 HOH A 52 352 102 HOH HOH . L 6 HOH A 53 353 38 HOH HOH . L 6 HOH A 54 354 30 HOH HOH . L 6 HOH A 55 355 25 HOH HOH . L 6 HOH A 56 356 27 HOH HOH . L 6 HOH A 57 357 104 HOH HOH . L 6 HOH A 58 358 31 HOH HOH . L 6 HOH A 59 359 23 HOH HOH . L 6 HOH A 60 360 50 HOH HOH . L 6 HOH A 61 361 224 HOH HOH . L 6 HOH A 62 362 29 HOH HOH . L 6 HOH A 63 363 12 HOH HOH . L 6 HOH A 64 364 229 HOH HOH . L 6 HOH A 65 365 89 HOH HOH . L 6 HOH A 66 366 127 HOH HOH . L 6 HOH A 67 367 52 HOH HOH . L 6 HOH A 68 368 19 HOH HOH . L 6 HOH A 69 369 33 HOH HOH . L 6 HOH A 70 370 92 HOH HOH . L 6 HOH A 71 371 73 HOH HOH . L 6 HOH A 72 372 95 HOH HOH . L 6 HOH A 73 373 244 HOH HOH . L 6 HOH A 74 374 216 HOH HOH . L 6 HOH A 75 375 53 HOH HOH . L 6 HOH A 76 376 22 HOH HOH . L 6 HOH A 77 377 100 HOH HOH . L 6 HOH A 78 378 123 HOH HOH . L 6 HOH A 79 379 7 HOH HOH . L 6 HOH A 80 380 11 HOH HOH . L 6 HOH A 81 381 85 HOH HOH . L 6 HOH A 82 382 64 HOH HOH . L 6 HOH A 83 383 71 HOH HOH . L 6 HOH A 84 384 72 HOH HOH . L 6 HOH A 85 385 111 HOH HOH . L 6 HOH A 86 386 44 HOH HOH . L 6 HOH A 87 387 126 HOH HOH . L 6 HOH A 88 388 8 HOH HOH . L 6 HOH A 89 389 132 HOH HOH . L 6 HOH A 90 390 82 HOH HOH . L 6 HOH A 91 391 63 HOH HOH . L 6 HOH A 92 392 94 HOH HOH . L 6 HOH A 93 393 31 HOH HOH . L 6 HOH A 94 394 12 HOH HOH . L 6 HOH A 95 395 238 HOH HOH . L 6 HOH A 96 396 26 HOH HOH . L 6 HOH A 97 397 128 HOH HOH . L 6 HOH A 98 398 82 HOH HOH . L 6 HOH A 99 399 231 HOH HOH . L 6 HOH A 100 400 225 HOH HOH . L 6 HOH A 101 401 75 HOH HOH . L 6 HOH A 102 402 136 HOH HOH . L 6 HOH A 103 403 149 HOH HOH . L 6 HOH A 104 404 125 HOH HOH . L 6 HOH A 105 405 131 HOH HOH . L 6 HOH A 106 406 134 HOH HOH . M 6 HOH B 1 301 86 HOH HOH . M 6 HOH B 2 302 57 HOH HOH . M 6 HOH B 3 303 27 HOH HOH . M 6 HOH B 4 304 5 HOH HOH . M 6 HOH B 5 305 59 HOH HOH . M 6 HOH B 6 306 50 HOH HOH . M 6 HOH B 7 307 11 HOH HOH . M 6 HOH B 8 308 52 HOH HOH . M 6 HOH B 9 309 95 HOH HOH . M 6 HOH B 10 310 6 HOH HOH . M 6 HOH B 11 311 26 HOH HOH . M 6 HOH B 12 312 1 HOH HOH . M 6 HOH B 13 313 70 HOH HOH . M 6 HOH B 14 314 32 HOH HOH . M 6 HOH B 15 315 97 HOH HOH . M 6 HOH B 16 316 53 HOH HOH . M 6 HOH B 17 317 4 HOH HOH . M 6 HOH B 18 318 51 HOH HOH . M 6 HOH B 19 319 91 HOH HOH . M 6 HOH B 20 320 1 HOH HOH . M 6 HOH B 21 321 13 HOH HOH . M 6 HOH B 22 322 23 HOH HOH . M 6 HOH B 23 323 30 HOH HOH . M 6 HOH B 24 324 53 HOH HOH . M 6 HOH B 25 325 90 HOH HOH . M 6 HOH B 26 326 58 HOH HOH . M 6 HOH B 27 327 1 HOH HOH . M 6 HOH B 28 328 157 HOH HOH . M 6 HOH B 29 329 7 HOH HOH . M 6 HOH B 30 330 61 HOH HOH . M 6 HOH B 31 331 117 HOH HOH . M 6 HOH B 32 332 36 HOH HOH . M 6 HOH B 33 333 27 HOH HOH . M 6 HOH B 34 334 18 HOH HOH . M 6 HOH B 35 335 32 HOH HOH . M 6 HOH B 36 336 25 HOH HOH . M 6 HOH B 37 337 235 HOH HOH . M 6 HOH B 38 338 77 HOH HOH . M 6 HOH B 39 339 70 HOH HOH . M 6 HOH B 40 340 25 HOH HOH . M 6 HOH B 41 341 3 HOH HOH . M 6 HOH B 42 342 3 HOH HOH . M 6 HOH B 43 343 15 HOH HOH . M 6 HOH B 44 344 34 HOH HOH . M 6 HOH B 45 345 9 HOH HOH . M 6 HOH B 46 346 2 HOH HOH . M 6 HOH B 47 347 124 HOH HOH . M 6 HOH B 48 348 148 HOH HOH . M 6 HOH B 49 349 34 HOH HOH . M 6 HOH B 50 350 23 HOH HOH . M 6 HOH B 51 351 123 HOH HOH . M 6 HOH B 52 352 17 HOH HOH . M 6 HOH B 53 353 21 HOH HOH . M 6 HOH B 54 354 51 HOH HOH . M 6 HOH B 55 355 59 HOH HOH . M 6 HOH B 56 356 20 HOH HOH . M 6 HOH B 57 357 74 HOH HOH . M 6 HOH B 58 358 36 HOH HOH . M 6 HOH B 59 359 149 HOH HOH . M 6 HOH B 60 360 91 HOH HOH . M 6 HOH B 61 361 2 HOH HOH . M 6 HOH B 62 362 15 HOH HOH . M 6 HOH B 63 363 16 HOH HOH . M 6 HOH B 64 364 18 HOH HOH . M 6 HOH B 65 365 14 HOH HOH . M 6 HOH B 66 366 110 HOH HOH . M 6 HOH B 67 367 26 HOH HOH . M 6 HOH B 68 368 26 HOH HOH . M 6 HOH B 69 369 100 HOH HOH . M 6 HOH B 70 370 89 HOH HOH . M 6 HOH B 71 371 86 HOH HOH . M 6 HOH B 72 372 127 HOH HOH . M 6 HOH B 73 373 4 HOH HOH . M 6 HOH B 74 374 4 HOH HOH . M 6 HOH B 75 375 35 HOH HOH . M 6 HOH B 76 376 8 HOH HOH . M 6 HOH B 77 377 2 HOH HOH . M 6 HOH B 78 378 36 HOH HOH . M 6 HOH B 79 379 48 HOH HOH . M 6 HOH B 80 380 37 HOH HOH . M 6 HOH B 81 381 56 HOH HOH . M 6 HOH B 82 382 5 HOH HOH . M 6 HOH B 83 383 33 HOH HOH . M 6 HOH B 84 384 60 HOH HOH . M 6 HOH B 85 385 7 HOH HOH . M 6 HOH B 86 386 82 HOH HOH . M 6 HOH B 87 387 232 HOH HOH . M 6 HOH B 88 388 133 HOH HOH . M 6 HOH B 89 389 135 HOH HOH . M 6 HOH B 90 390 240 HOH HOH . M 6 HOH B 91 391 103 HOH HOH . M 6 HOH B 92 392 114 HOH HOH . M 6 HOH B 93 393 139 HOH HOH . M 6 HOH B 94 394 61 HOH HOH . M 6 HOH B 95 395 132 HOH HOH . M 6 HOH B 96 396 245 HOH HOH . M 6 HOH B 97 397 50 HOH HOH . M 6 HOH B 98 398 246 HOH HOH . M 6 HOH B 99 399 109 HOH HOH . M 6 HOH B 100 400 110 HOH HOH . M 6 HOH B 101 401 153 HOH HOH . M 6 HOH B 102 402 188 HOH HOH . M 6 HOH B 103 403 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -19.653 0.386 2.867 1 57.51 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . F 4 -18.255 0.463 2.511 1 57.41 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . F 4 -20.438 0.124 1.593 1 61.59 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . F 4 -19.902 -1.08 0.985 1 61.78 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #