data_7OKU # _model_server_result.job_id R1K56iV2ptaFxTMFxyAbvw _model_server_result.datetime_utc '2024-11-24 06:19:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7OKU # _exptl.entry_id 7OKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKU _cell.length_a 70.619 _cell.length_b 70.619 _cell.length_c 97.367 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 201 NAG 2 n B NAG 2 B 2 NAG A 207 NAG 2 n C NAG 1 C 1 NAG A 213 NAG 2 n C NAG 2 C 2 NAG A 212 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 49 A ASN 47 1_555 D C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 121 A ASN 119 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 A NH2 ARG 132 A ARG 130 1_555 E O1 EDO . A EDO 202 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7OKU _atom_sites.fract_transf_matrix[1][1] 0.01416 _atom_sites.fract_transf_matrix[1][2] 0.008176 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 201 202 NAG NAG . E 4 EDO A 1 202 208 EDO EDO . F 5 PTY A 1 203 214 PTY PTY . G 4 EDO A 1 204 215 EDO EDO . H 6 HOH A 1 301 96 HOH HOH . H 6 HOH A 2 302 17 HOH HOH . H 6 HOH A 3 303 109 HOH HOH . H 6 HOH A 4 304 4 HOH HOH . H 6 HOH A 5 305 24 HOH HOH . H 6 HOH A 6 306 11 HOH HOH . H 6 HOH A 7 307 104 HOH HOH . H 6 HOH A 8 308 103 HOH HOH . H 6 HOH A 9 309 31 HOH HOH . H 6 HOH A 10 310 5 HOH HOH . H 6 HOH A 11 311 20 HOH HOH . H 6 HOH A 12 312 98 HOH HOH . H 6 HOH A 13 313 35 HOH HOH . H 6 HOH A 14 314 46 HOH HOH . H 6 HOH A 15 315 62 HOH HOH . H 6 HOH A 16 316 91 HOH HOH . H 6 HOH A 17 317 100 HOH HOH . H 6 HOH A 18 318 95 HOH HOH . H 6 HOH A 19 319 50 HOH HOH . H 6 HOH A 20 320 1 HOH HOH . H 6 HOH A 21 321 99 HOH HOH . H 6 HOH A 22 322 2 HOH HOH . H 6 HOH A 23 323 28 HOH HOH . H 6 HOH A 24 324 12 HOH HOH . H 6 HOH A 25 325 9 HOH HOH . H 6 HOH A 26 326 18 HOH HOH . H 6 HOH A 27 327 93 HOH HOH . H 6 HOH A 28 328 53 HOH HOH . H 6 HOH A 29 329 14 HOH HOH . H 6 HOH A 30 330 25 HOH HOH . H 6 HOH A 31 331 110 HOH HOH . H 6 HOH A 32 332 16 HOH HOH . H 6 HOH A 33 333 108 HOH HOH . H 6 HOH A 34 334 15 HOH HOH . H 6 HOH A 35 335 10 HOH HOH . H 6 HOH A 36 336 33 HOH HOH . H 6 HOH A 37 337 69 HOH HOH . H 6 HOH A 38 338 26 HOH HOH . H 6 HOH A 39 339 7 HOH HOH . H 6 HOH A 40 340 97 HOH HOH . H 6 HOH A 41 341 29 HOH HOH . H 6 HOH A 42 342 8 HOH HOH . H 6 HOH A 43 343 3 HOH HOH . H 6 HOH A 44 344 107 HOH HOH . H 6 HOH A 45 345 106 HOH HOH . H 6 HOH A 46 346 40 HOH HOH . H 6 HOH A 47 347 34 HOH HOH . H 6 HOH A 48 348 47 HOH HOH . H 6 HOH A 49 349 105 HOH HOH . H 6 HOH A 50 350 101 HOH HOH . H 6 HOH A 51 351 49 HOH HOH . H 6 HOH A 52 352 32 HOH HOH . H 6 HOH A 53 353 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 23.119 -37.975 12.039 1 113.01 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . D 3 23.411 -39.45 12.424 1 116.31 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . D 3 23.046 -40.408 11.27 1 115.68 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . D 3 21.637 -40.138 10.756 1 114.08 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . D 3 21.521 -38.673 10.35 1 112.95 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . D 3 20.149 -38.287 9.85 1 108.97 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . D 3 25.302 -39.52 14.009 1 119.13 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . D 3 24.287 -39.377 15.109 1 115.03 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . D 3 24.82 -39.578 12.762 1 116.39 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . D 3 23.178 -41.773 11.666 1 111.5 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . D 3 21.354 -40.963 9.632 1 109.07 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . D 3 21.779 -37.857 11.495 1 114.4 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . D 3 19.756 -39.106 8.76 1 99.86 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . D 3 26.508 -39.597 14.241 1 112.29 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #