data_7OKU # _model_server_result.job_id 5ArtP4xl84vRj5pjpBf36w _model_server_result.datetime_utc '2024-11-28 00:20:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 7OKU # _exptl.entry_id 7OKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKU _cell.length_a 70.619 _cell.length_b 70.619 _cell.length_c 97.367 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 201 NAG 2 n B NAG 2 B 2 NAG A 207 NAG 2 n C NAG 1 C 1 NAG A 213 NAG 2 n C NAG 2 C 2 NAG A 212 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 49 A ASN 47 1_555 D C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 121 A ASN 119 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 A NH2 ARG 132 A ARG 130 1_555 E O1 EDO . A EDO 202 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 316 n n C1 C6 PTY sing 317 n n C1 HC11 PTY sing 318 n n C1 HC12 PTY sing 319 n n C2 C3 PTY sing 320 n n C2 N1 PTY sing 321 n n C2 HC21 PTY sing 322 n n C2 HC22 PTY sing 323 n n C3 O11 PTY sing 324 n n C3 HC31 PTY sing 325 n n C3 HC32 PTY sing 326 n n O4 C30 PTY sing 327 n n C5 C6 PTY sing 328 n n C5 O14 PTY sing 329 n n C5 HC51 PTY sing 330 n n C5 HC52 PTY sing 331 n n C6 O7 PTY sing 332 n n C6 HC6 PTY sing 333 n n O7 C8 PTY sing 334 n n C8 O10 PTY doub 335 n n C8 C11 PTY sing 336 n n C11 C12 PTY sing 337 n n C11 H111 PTY sing 338 n n C11 H112 PTY sing 339 n n C12 C13 PTY sing 340 n n C12 H121 PTY sing 341 n n C12 H122 PTY sing 342 n n C13 C14 PTY sing 343 n n C13 H131 PTY sing 344 n n C13 H132 PTY sing 345 n n C14 C15 PTY sing 346 n n C14 H141 PTY sing 347 n n C14 H142 PTY sing 348 n n C15 C16 PTY sing 349 n n C15 H151 PTY sing 350 n n C15 H152 PTY sing 351 n n C16 C17 PTY sing 352 n n C16 H161 PTY sing 353 n n C16 H162 PTY sing 354 n n C17 C18 PTY sing 355 n n C17 H171 PTY sing 356 n n C17 H172 PTY sing 357 n n C18 C19 PTY sing 358 n n C18 H181 PTY sing 359 n n C18 H182 PTY sing 360 n n C19 C20 PTY sing 361 n n C19 H191 PTY sing 362 n n C19 H192 PTY sing 363 n n C20 C21 PTY sing 364 n n C20 H201 PTY sing 365 n n C20 H202 PTY sing 366 n n C21 C22 PTY sing 367 n n C21 H211 PTY sing 368 n n C21 H212 PTY sing 369 n n C22 C23 PTY sing 370 n n C22 H221 PTY sing 371 n n C22 H222 PTY sing 372 n n C23 C24 PTY sing 373 n n C23 H231 PTY sing 374 n n C23 H232 PTY sing 375 n n C24 C25 PTY sing 376 n n C24 H241 PTY sing 377 n n C24 H242 PTY sing 378 n n C25 C26 PTY sing 379 n n C25 H251 PTY sing 380 n n C25 H252 PTY sing 381 n n C26 C27 PTY sing 382 n n C26 H261 PTY sing 383 n n C26 H262 PTY sing 384 n n C27 C28 PTY sing 385 n n C27 H271 PTY sing 386 n n C27 H272 PTY sing 387 n n C28 C29 PTY sing 388 n n C28 H281 PTY sing 389 n n C28 H282 PTY sing 390 n n C29 H291 PTY sing 391 n n C29 H292 PTY sing 392 n n C29 H293 PTY sing 393 n n C30 C31 PTY sing 394 n n C30 O30 PTY doub 395 n n C31 C32 PTY sing 396 n n C31 H311 PTY sing 397 n n C31 H312 PTY sing 398 n n C32 C33 PTY sing 399 n n C32 H321 PTY sing 400 n n C32 H322 PTY sing 401 n n C33 C34 PTY sing 402 n n C33 H331 PTY sing 403 n n C33 H332 PTY sing 404 n n C34 C35 PTY sing 405 n n C34 H341 PTY sing 406 n n C34 H342 PTY sing 407 n n C35 C36 PTY sing 408 n n C35 H351 PTY sing 409 n n C35 H352 PTY sing 410 n n C36 C37 PTY sing 411 n n C36 H361 PTY sing 412 n n C36 H362 PTY sing 413 n n C37 C38 PTY sing 414 n n C37 H371 PTY sing 415 n n C37 H372 PTY sing 416 n n C38 C39 PTY sing 417 n n C38 H381 PTY sing 418 n n C38 H382 PTY sing 419 n n C39 C40 PTY sing 420 n n C39 H391 PTY sing 421 n n C39 H392 PTY sing 422 n n C40 C41 PTY sing 423 n n C40 H401 PTY sing 424 n n C40 H402 PTY sing 425 n n C41 C42 PTY sing 426 n n C41 H411 PTY sing 427 n n C41 H412 PTY sing 428 n n C42 C43 PTY sing 429 n n C42 H421 PTY sing 430 n n C42 H422 PTY sing 431 n n C43 C44 PTY sing 432 n n C43 H431 PTY sing 433 n n C43 H432 PTY sing 434 n n C44 H441 PTY sing 435 n n C44 H442 PTY sing 436 n n C44 H443 PTY sing 437 n n P1 O11 PTY sing 438 n n P1 O12 PTY sing 439 n n P1 O13 PTY doub 440 n n P1 O14 PTY sing 441 n n O12 H12O PTY sing 442 n n N1 HN11 PTY sing 443 n n N1 HN12 PTY sing 444 n n # _atom_sites.entry_id 7OKU _atom_sites.fract_transf_matrix[1][1] 0.01416 _atom_sites.fract_transf_matrix[1][2] 0.008176 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 201 202 NAG NAG . E 4 EDO A 1 202 208 EDO EDO . F 5 PTY A 1 203 214 PTY PTY . G 4 EDO A 1 204 215 EDO EDO . H 6 HOH A 1 301 96 HOH HOH . H 6 HOH A 2 302 17 HOH HOH . H 6 HOH A 3 303 109 HOH HOH . H 6 HOH A 4 304 4 HOH HOH . H 6 HOH A 5 305 24 HOH HOH . H 6 HOH A 6 306 11 HOH HOH . H 6 HOH A 7 307 104 HOH HOH . H 6 HOH A 8 308 103 HOH HOH . H 6 HOH A 9 309 31 HOH HOH . H 6 HOH A 10 310 5 HOH HOH . H 6 HOH A 11 311 20 HOH HOH . H 6 HOH A 12 312 98 HOH HOH . H 6 HOH A 13 313 35 HOH HOH . H 6 HOH A 14 314 46 HOH HOH . H 6 HOH A 15 315 62 HOH HOH . H 6 HOH A 16 316 91 HOH HOH . H 6 HOH A 17 317 100 HOH HOH . H 6 HOH A 18 318 95 HOH HOH . H 6 HOH A 19 319 50 HOH HOH . H 6 HOH A 20 320 1 HOH HOH . H 6 HOH A 21 321 99 HOH HOH . H 6 HOH A 22 322 2 HOH HOH . H 6 HOH A 23 323 28 HOH HOH . H 6 HOH A 24 324 12 HOH HOH . H 6 HOH A 25 325 9 HOH HOH . H 6 HOH A 26 326 18 HOH HOH . H 6 HOH A 27 327 93 HOH HOH . H 6 HOH A 28 328 53 HOH HOH . H 6 HOH A 29 329 14 HOH HOH . H 6 HOH A 30 330 25 HOH HOH . H 6 HOH A 31 331 110 HOH HOH . H 6 HOH A 32 332 16 HOH HOH . H 6 HOH A 33 333 108 HOH HOH . H 6 HOH A 34 334 15 HOH HOH . H 6 HOH A 35 335 10 HOH HOH . H 6 HOH A 36 336 33 HOH HOH . H 6 HOH A 37 337 69 HOH HOH . H 6 HOH A 38 338 26 HOH HOH . H 6 HOH A 39 339 7 HOH HOH . H 6 HOH A 40 340 97 HOH HOH . H 6 HOH A 41 341 29 HOH HOH . H 6 HOH A 42 342 8 HOH HOH . H 6 HOH A 43 343 3 HOH HOH . H 6 HOH A 44 344 107 HOH HOH . H 6 HOH A 45 345 106 HOH HOH . H 6 HOH A 46 346 40 HOH HOH . H 6 HOH A 47 347 34 HOH HOH . H 6 HOH A 48 348 47 HOH HOH . H 6 HOH A 49 349 105 HOH HOH . H 6 HOH A 50 350 101 HOH HOH . H 6 HOH A 51 351 49 HOH HOH . H 6 HOH A 52 352 32 HOH HOH . H 6 HOH A 53 353 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . F 5 35.214 -19.499 2.92 1 87.43 ? C1 PTY 203 A 1 HETATM 2 O O4 PTY . . . F 5 34.839 -19.06 4.243 1 86.12 ? O4 PTY 203 A 1 HETATM 3 C C5 PTY . . . F 5 36.008 -21.79 2.293 1 93.08 ? C5 PTY 203 A 1 HETATM 4 C C6 PTY . . . F 5 34.847 -20.964 2.794 1 95.59 ? C6 PTY 203 A 1 HETATM 5 O O7 PTY . . . F 5 33.724 -21.072 1.903 1 97.19 ? O7 PTY 203 A 1 HETATM 6 C C8 PTY . . . F 5 32.811 -22.052 2.049 1 88.8 ? C8 PTY 203 A 1 HETATM 7 O O10 PTY . . . F 5 33.013 -23.09 2.611 1 100.53 ? O10 PTY 203 A 1 HETATM 8 C C11 PTY . . . F 5 31.489 -21.741 1.417 1 79.43 ? C11 PTY 203 A 1 HETATM 9 C C12 PTY . . . F 5 30.284 -21.695 2.317 1 70.32 ? C12 PTY 203 A 1 HETATM 10 C C13 PTY . . . F 5 29.043 -22.006 1.495 1 65.96 ? C13 PTY 203 A 1 HETATM 11 C C14 PTY . . . F 5 27.715 -21.919 2.237 1 69.62 ? C14 PTY 203 A 1 HETATM 12 C C15 PTY . . . F 5 26.837 -23.115 1.948 1 55.66 ? C15 PTY 203 A 1 HETATM 13 C C16 PTY . . . F 5 25.351 -23.002 2.204 1 58.03 ? C16 PTY 203 A 1 HETATM 14 C C17 PTY . . . F 5 24.781 -24.35 2.632 1 62.5 ? C17 PTY 203 A 1 HETATM 15 C C18 PTY . . . F 5 23.44 -24.88 2.087 1 60.81 ? C18 PTY 203 A 1 HETATM 16 C C19 PTY . . . F 5 23.474 -25.579 0.734 1 64.66 ? C19 PTY 203 A 1 HETATM 17 C C20 PTY . . . F 5 23.484 -27.096 0.793 1 55.79 ? C20 PTY 203 A 1 HETATM 18 C C21 PTY . . . F 5 24.893 -27.581 0.423 1 63.51 ? C21 PTY 203 A 1 HETATM 19 C C22 PTY . . . F 5 25.235 -27.453 -1.052 1 64.85 ? C22 PTY 203 A 1 HETATM 20 C C23 PTY . . . F 5 26.718 -27.313 -1.378 1 63.69 ? C23 PTY 203 A 1 HETATM 21 C C24 PTY . . . F 5 26.948 -27.463 -2.869 1 62.36 ? C24 PTY 203 A 1 HETATM 22 C C25 PTY . . . F 5 28.415 -27.519 -3.346 1 71.21 ? C25 PTY 203 A 1 HETATM 23 C C26 PTY . . . F 5 28.792 -26.397 -4.304 1 82.68 ? C26 PTY 203 A 1 HETATM 24 C C27 PTY . . . F 5 30.272 -26.261 -4.672 1 74.93 ? C27 PTY 203 A 1 HETATM 25 C C30 PTY . . . F 5 33.743 -18.285 4.309 1 85.96 ? C30 PTY 203 A 1 HETATM 26 C C31 PTY . . . F 5 33.426 -17.713 5.678 1 82.64 ? C31 PTY 203 A 1 HETATM 27 O O30 PTY . . . F 5 33.089 -18.082 3.317 1 91.38 ? O30 PTY 203 A 1 HETATM 28 C C32 PTY . . . F 5 32.03 -17.087 5.861 1 77.36 ? C32 PTY 203 A 1 HETATM 29 C C33 PTY . . . F 5 31.639 -17.038 7.349 1 80.91 ? C33 PTY 203 A 1 HETATM 30 C C34 PTY . . . F 5 30.49 -16.083 7.682 1 72.45 ? C34 PTY 203 A 1 HETATM 31 C C35 PTY . . . F 5 29.453 -15.981 6.558 1 68.08 ? C35 PTY 203 A 1 HETATM 32 C C36 PTY . . . F 5 28.665 -14.697 6.657 1 58.78 ? C36 PTY 203 A 1 HETATM 33 C C37 PTY . . . F 5 27.352 -14.743 7.379 1 51.92 ? C37 PTY 203 A 1 HETATM 34 C C38 PTY . . . F 5 27.234 -13.576 8.332 1 58.25 ? C38 PTY 203 A 1 HETATM 35 C C39 PTY . . . F 5 26.103 -13.675 9.319 1 64.74 ? C39 PTY 203 A 1 HETATM 36 C C40 PTY . . . F 5 26.635 -13.96 10.693 1 63.28 ? C40 PTY 203 A 1 HETATM 37 C C41 PTY . . . F 5 25.61 -13.69 11.762 1 74.09 ? C41 PTY 203 A 1 HETATM 38 C C42 PTY . . . F 5 25.442 -12.247 12.179 1 65.64 ? C42 PTY 203 A 1 HETATM 39 C C43 PTY . . . F 5 24.904 -12.163 13.591 1 66.07 ? C43 PTY 203 A 1 HETATM 40 C C44 PTY . . . F 5 23.446 -11.753 13.734 1 67.21 ? C44 PTY 203 A 1 HETATM 41 P P1 PTY . . . F 5 36.521 -23.2 0.144 1 151.41 ? P1 PTY 203 A 1 HETATM 42 O O11 PTY . . . F 5 36.804 -22.485 -1.328 1 109.43 ? O11 PTY 203 A 1 HETATM 43 O O12 PTY . . . F 5 35.441 -24.229 -0.011 1 122.01 ? O12 PTY 203 A 1 HETATM 44 O O13 PTY . . . F 5 37.793 -23.591 0.852 1 129.54 ? O13 PTY 203 A 1 HETATM 45 O O14 PTY . . . F 5 35.887 -21.877 0.898 1 99.13 ? O14 PTY 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #