data_7OKV # _model_server_result.job_id ssSegDmQQMHSxyYf3K1Nsg _model_server_result.datetime_utc '2024-10-18 16:26:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7OKV # _exptl.entry_id 7OKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKV _cell.length_a 71.051 _cell.length_b 71.051 _cell.length_c 103.153 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 49 A ASN 47 1_555 G C1 NAG . A NAG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 121 A ASN 119 1_555 D C1 NAG . A NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 296 n n C1 O1 NAG sing 297 n n C1 O5 NAG sing 298 n n C1 H1 NAG sing 299 n n C2 C3 NAG sing 300 n n C2 N2 NAG sing 301 n n C2 H2 NAG sing 302 n n C3 C4 NAG sing 303 n n C3 O3 NAG sing 304 n n C3 H3 NAG sing 305 n n C4 C5 NAG sing 306 n n C4 O4 NAG sing 307 n n C4 H4 NAG sing 308 n n C5 C6 NAG sing 309 n n C5 O5 NAG sing 310 n n C5 H5 NAG sing 311 n n C6 O6 NAG sing 312 n n C6 H61 NAG sing 313 n n C6 H62 NAG sing 314 n n C7 C8 NAG sing 315 n n C7 N2 NAG sing 316 n n C7 O7 NAG doub 317 n n C8 H81 NAG sing 318 n n C8 H82 NAG sing 319 n n C8 H83 NAG sing 320 n n N2 HN2 NAG sing 321 n n O1 HO1 NAG sing 322 n n O3 HO3 NAG sing 323 n n O4 HO4 NAG sing 324 n n O6 HO6 NAG sing 325 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7OKV _atom_sites.fract_transf_matrix[1][1] 0.014074 _atom_sites.fract_transf_matrix[1][2] 0.008126 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 201 NAG NAG . C 3 R16 A 1 202 203 R16 R16 . D 2 NAG A 1 203 204 NAG NAG . E 4 HEX A 1 204 205 HEX HEX . F 5 D10 A 1 205 206 D10 D10 . G 2 NAG A 1 206 207 NAG NAG . H 6 EDO A 1 207 208 EDO EDO . I 7 HOH A 1 301 56 HOH HOH . I 7 HOH A 2 302 39 HOH HOH . I 7 HOH A 3 303 13 HOH HOH . I 7 HOH A 4 304 46 HOH HOH . I 7 HOH A 5 305 16 HOH HOH . I 7 HOH A 6 306 26 HOH HOH . I 7 HOH A 7 307 2 HOH HOH . I 7 HOH A 8 308 49 HOH HOH . I 7 HOH A 9 309 6 HOH HOH . I 7 HOH A 10 310 5 HOH HOH . I 7 HOH A 11 311 38 HOH HOH . I 7 HOH A 12 312 30 HOH HOH . I 7 HOH A 13 313 7 HOH HOH . I 7 HOH A 14 314 3 HOH HOH . I 7 HOH A 15 315 43 HOH HOH . I 7 HOH A 16 316 20 HOH HOH . I 7 HOH A 17 317 17 HOH HOH . I 7 HOH A 18 318 12 HOH HOH . I 7 HOH A 19 319 9 HOH HOH . I 7 HOH A 20 320 33 HOH HOH . I 7 HOH A 21 321 1 HOH HOH . I 7 HOH A 22 322 41 HOH HOH . I 7 HOH A 23 323 14 HOH HOH . I 7 HOH A 24 324 27 HOH HOH . I 7 HOH A 25 325 15 HOH HOH . I 7 HOH A 26 326 4 HOH HOH . I 7 HOH A 27 327 31 HOH HOH . I 7 HOH A 28 328 32 HOH HOH . I 7 HOH A 29 329 21 HOH HOH . I 7 HOH A 30 330 25 HOH HOH . I 7 HOH A 31 331 29 HOH HOH . I 7 HOH A 32 332 55 HOH HOH . I 7 HOH A 33 333 40 HOH HOH . I 7 HOH A 34 334 35 HOH HOH . I 7 HOH A 35 335 23 HOH HOH . I 7 HOH A 36 336 34 HOH HOH . I 7 HOH A 37 337 36 HOH HOH . I 7 HOH A 38 338 18 HOH HOH . I 7 HOH A 39 339 24 HOH HOH . I 7 HOH A 40 340 51 HOH HOH . I 7 HOH A 41 341 28 HOH HOH . I 7 HOH A 42 342 44 HOH HOH . I 7 HOH A 43 343 11 HOH HOH . I 7 HOH A 44 344 54 HOH HOH . I 7 HOH A 45 345 37 HOH HOH . I 7 HOH A 46 346 19 HOH HOH . I 7 HOH A 47 347 10 HOH HOH . I 7 HOH A 48 348 8 HOH HOH . I 7 HOH A 49 349 48 HOH HOH . I 7 HOH A 50 350 53 HOH HOH . I 7 HOH A 51 351 52 HOH HOH . I 7 HOH A 52 352 22 HOH HOH . I 7 HOH A 53 353 45 HOH HOH . I 7 HOH A 54 354 42 HOH HOH . I 7 HOH A 55 355 50 HOH HOH . I 7 HOH A 56 356 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 14.44 -27.304 0.595 1 47.5 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . B 2 13.959 -26.452 -0.58 1 43.15 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . B 2 12.807 -25.549 -0.147 1 54.14 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . B 2 11.701 -26.364 0.51 1 63.32 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . B 2 12.273 -27.208 1.644 1 61.03 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . B 2 11.253 -28.139 2.256 1 60.03 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . B 2 15.934 -26.136 -2.005 1 44.25 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . B 2 16.993 -25.18 -2.452 1 43.12 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . B 2 15.051 -25.657 -1.123 1 45.07 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . B 2 12.292 -24.865 -1.284 1 51.34 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . B 2 10.706 -25.493 1.036 1 62.9 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . B 2 13.334 -28.034 1.146 1 51.62 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . B 2 10.041 -28.128 1.516 1 74.99 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . B 2 15.877 -27.289 -2.424 1 41.06 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #