data_7OKV # _model_server_result.job_id RBSqd6JTGxyEYnO0B-xrUA _model_server_result.datetime_utc '2024-11-27 22:57:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7OKV # _exptl.entry_id 7OKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKV _cell.length_a 71.051 _cell.length_b 71.051 _cell.length_c 103.153 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 49 A ASN 47 1_555 G C1 NAG . A NAG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 121 A ASN 119 1_555 D C1 NAG . A NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C16 H34' _chem_comp.formula_weight 226.441 _chem_comp.id R16 _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R16 sing 366 n n C27 H271 R16 sing 367 n n C27 H272 R16 sing 368 n n C27 H273 R16 sing 369 n n C28 C29 R16 sing 370 n n C28 H281 R16 sing 371 n n C28 H282 R16 sing 372 n n C29 C30 R16 sing 373 n n C29 H291 R16 sing 374 n n C29 H292 R16 sing 375 n n C30 C31 R16 sing 376 n n C30 H301 R16 sing 377 n n C30 H302 R16 sing 378 n n C31 C32 R16 sing 379 n n C31 H311 R16 sing 380 n n C31 H312 R16 sing 381 n n C32 C33 R16 sing 382 n n C32 H321 R16 sing 383 n n C32 H322 R16 sing 384 n n C33 C34 R16 sing 385 n n C33 H331 R16 sing 386 n n C33 H332 R16 sing 387 n n C34 C35 R16 sing 388 n n C34 H341 R16 sing 389 n n C34 H342 R16 sing 390 n n C35 C36 R16 sing 391 n n C35 H351 R16 sing 392 n n C35 H352 R16 sing 393 n n C36 C37 R16 sing 394 n n C36 H361 R16 sing 395 n n C36 H362 R16 sing 396 n n C37 C38 R16 sing 397 n n C37 H371 R16 sing 398 n n C37 H372 R16 sing 399 n n C38 C39 R16 sing 400 n n C38 H381 R16 sing 401 n n C38 H382 R16 sing 402 n n C39 C40 R16 sing 403 n n C39 H391 R16 sing 404 n n C39 H392 R16 sing 405 n n C40 C41 R16 sing 406 n n C40 H401 R16 sing 407 n n C40 H402 R16 sing 408 n n C41 C42 R16 sing 409 n n C41 H411 R16 sing 410 n n C41 H412 R16 sing 411 n n C42 H421 R16 sing 412 n n C42 H422 R16 sing 413 n n C42 H423 R16 sing 414 n n # _atom_sites.entry_id 7OKV _atom_sites.fract_transf_matrix[1][1] 0.014074 _atom_sites.fract_transf_matrix[1][2] 0.008126 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 201 NAG NAG . C 3 R16 A 1 202 203 R16 R16 . D 2 NAG A 1 203 204 NAG NAG . E 4 HEX A 1 204 205 HEX HEX . F 5 D10 A 1 205 206 D10 D10 . G 2 NAG A 1 206 207 NAG NAG . H 6 EDO A 1 207 208 EDO EDO . I 7 HOH A 1 301 56 HOH HOH . I 7 HOH A 2 302 39 HOH HOH . I 7 HOH A 3 303 13 HOH HOH . I 7 HOH A 4 304 46 HOH HOH . I 7 HOH A 5 305 16 HOH HOH . I 7 HOH A 6 306 26 HOH HOH . I 7 HOH A 7 307 2 HOH HOH . I 7 HOH A 8 308 49 HOH HOH . I 7 HOH A 9 309 6 HOH HOH . I 7 HOH A 10 310 5 HOH HOH . I 7 HOH A 11 311 38 HOH HOH . I 7 HOH A 12 312 30 HOH HOH . I 7 HOH A 13 313 7 HOH HOH . I 7 HOH A 14 314 3 HOH HOH . I 7 HOH A 15 315 43 HOH HOH . I 7 HOH A 16 316 20 HOH HOH . I 7 HOH A 17 317 17 HOH HOH . I 7 HOH A 18 318 12 HOH HOH . I 7 HOH A 19 319 9 HOH HOH . I 7 HOH A 20 320 33 HOH HOH . I 7 HOH A 21 321 1 HOH HOH . I 7 HOH A 22 322 41 HOH HOH . I 7 HOH A 23 323 14 HOH HOH . I 7 HOH A 24 324 27 HOH HOH . I 7 HOH A 25 325 15 HOH HOH . I 7 HOH A 26 326 4 HOH HOH . I 7 HOH A 27 327 31 HOH HOH . I 7 HOH A 28 328 32 HOH HOH . I 7 HOH A 29 329 21 HOH HOH . I 7 HOH A 30 330 25 HOH HOH . I 7 HOH A 31 331 29 HOH HOH . I 7 HOH A 32 332 55 HOH HOH . I 7 HOH A 33 333 40 HOH HOH . I 7 HOH A 34 334 35 HOH HOH . I 7 HOH A 35 335 23 HOH HOH . I 7 HOH A 36 336 34 HOH HOH . I 7 HOH A 37 337 36 HOH HOH . I 7 HOH A 38 338 18 HOH HOH . I 7 HOH A 39 339 24 HOH HOH . I 7 HOH A 40 340 51 HOH HOH . I 7 HOH A 41 341 28 HOH HOH . I 7 HOH A 42 342 44 HOH HOH . I 7 HOH A 43 343 11 HOH HOH . I 7 HOH A 44 344 54 HOH HOH . I 7 HOH A 45 345 37 HOH HOH . I 7 HOH A 46 346 19 HOH HOH . I 7 HOH A 47 347 10 HOH HOH . I 7 HOH A 48 348 8 HOH HOH . I 7 HOH A 49 349 48 HOH HOH . I 7 HOH A 50 350 53 HOH HOH . I 7 HOH A 51 351 52 HOH HOH . I 7 HOH A 52 352 22 HOH HOH . I 7 HOH A 53 353 45 HOH HOH . I 7 HOH A 54 354 42 HOH HOH . I 7 HOH A 55 355 50 HOH HOH . I 7 HOH A 56 356 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 R16 . . . C 3 35.636 -17.708 8.475 1 57.89 ? C27 R16 202 A 1 HETATM 2 C C28 R16 . . . C 3 35.458 -18.923 7.593 1 56.07 ? C28 R16 202 A 1 HETATM 3 C C29 R16 . . . C 3 34.03 -19.208 7.203 1 58.19 ? C29 R16 202 A 1 HETATM 4 C C30 R16 . . . C 3 33.896 -20.357 6.231 1 56.24 ? C30 R16 202 A 1 HETATM 5 C C31 R16 . . . C 3 32.664 -20.322 5.345 1 65.8 ? C31 R16 202 A 1 HETATM 6 C C32 R16 . . . C 3 31.356 -20.552 6.061 1 60 ? C32 R16 202 A 1 HETATM 7 C C33 R16 . . . C 3 30.573 -19.304 6.387 1 57.61 ? C33 R16 202 A 1 HETATM 8 C C34 R16 . . . C 3 29.567 -18.873 5.34 1 46.58 ? C34 R16 202 A 1 HETATM 9 C C35 R16 . . . C 3 28.589 -17.867 5.88 1 42.37 ? C35 R16 202 A 1 HETATM 10 C C36 R16 . . . C 3 28.281 -18.129 7.328 1 47.94 ? C36 R16 202 A 1 HETATM 11 C C37 R16 . . . C 3 27.516 -17.063 8.06 1 38.52 ? C37 R16 202 A 1 HETATM 12 C C38 R16 . . . C 3 27.662 -17.212 9.557 1 52.43 ? C38 R16 202 A 1 HETATM 13 C C39 R16 . . . C 3 26.705 -16.419 10.398 1 50.78 ? C39 R16 202 A 1 HETATM 14 C C40 R16 . . . C 3 26.969 -16.562 11.877 1 46.14 ? C40 R16 202 A 1 HETATM 15 C C41 R16 . . . C 3 25.95 -15.926 12.774 1 43.23 ? C41 R16 202 A 1 HETATM 16 C C42 R16 . . . C 3 26.475 -15.718 14.172 1 43.99 ? C42 R16 202 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #