data_7OKV # _model_server_result.job_id lM3qHJEHWAcpy34zIvkr2A _model_server_result.datetime_utc '2024-11-27 22:58:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 7OKV # _exptl.entry_id 7OKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKV _cell.length_a 71.051 _cell.length_b 71.051 _cell.length_c 103.153 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 49 A ASN 47 1_555 G C1 NAG . A NAG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 121 A ASN 119 1_555 D C1 NAG . A NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 83 n n C1 H11 D10 sing 84 n n C1 H12 D10 sing 85 n n C1 H13 D10 sing 86 n n C2 C3 D10 sing 87 n n C2 H21 D10 sing 88 n n C2 H22 D10 sing 89 n n C3 C4 D10 sing 90 n n C3 H31 D10 sing 91 n n C3 H32 D10 sing 92 n n C4 C5 D10 sing 93 n n C4 H41 D10 sing 94 n n C4 H42 D10 sing 95 n n C5 C6 D10 sing 96 n n C5 H51 D10 sing 97 n n C5 H52 D10 sing 98 n n C6 C7 D10 sing 99 n n C6 H61 D10 sing 100 n n C6 H62 D10 sing 101 n n C7 C8 D10 sing 102 n n C7 H71 D10 sing 103 n n C7 H72 D10 sing 104 n n C8 C9 D10 sing 105 n n C8 H81 D10 sing 106 n n C8 H82 D10 sing 107 n n C9 C10 D10 sing 108 n n C9 H91 D10 sing 109 n n C9 H92 D10 sing 110 n n C10 H101 D10 sing 111 n n C10 H102 D10 sing 112 n n C10 H103 D10 sing 113 n n # _atom_sites.entry_id 7OKV _atom_sites.fract_transf_matrix[1][1] 0.014074 _atom_sites.fract_transf_matrix[1][2] 0.008126 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 201 NAG NAG . C 3 R16 A 1 202 203 R16 R16 . D 2 NAG A 1 203 204 NAG NAG . E 4 HEX A 1 204 205 HEX HEX . F 5 D10 A 1 205 206 D10 D10 . G 2 NAG A 1 206 207 NAG NAG . H 6 EDO A 1 207 208 EDO EDO . I 7 HOH A 1 301 56 HOH HOH . I 7 HOH A 2 302 39 HOH HOH . I 7 HOH A 3 303 13 HOH HOH . I 7 HOH A 4 304 46 HOH HOH . I 7 HOH A 5 305 16 HOH HOH . I 7 HOH A 6 306 26 HOH HOH . I 7 HOH A 7 307 2 HOH HOH . I 7 HOH A 8 308 49 HOH HOH . I 7 HOH A 9 309 6 HOH HOH . I 7 HOH A 10 310 5 HOH HOH . I 7 HOH A 11 311 38 HOH HOH . I 7 HOH A 12 312 30 HOH HOH . I 7 HOH A 13 313 7 HOH HOH . I 7 HOH A 14 314 3 HOH HOH . I 7 HOH A 15 315 43 HOH HOH . I 7 HOH A 16 316 20 HOH HOH . I 7 HOH A 17 317 17 HOH HOH . I 7 HOH A 18 318 12 HOH HOH . I 7 HOH A 19 319 9 HOH HOH . I 7 HOH A 20 320 33 HOH HOH . I 7 HOH A 21 321 1 HOH HOH . I 7 HOH A 22 322 41 HOH HOH . I 7 HOH A 23 323 14 HOH HOH . I 7 HOH A 24 324 27 HOH HOH . I 7 HOH A 25 325 15 HOH HOH . I 7 HOH A 26 326 4 HOH HOH . I 7 HOH A 27 327 31 HOH HOH . I 7 HOH A 28 328 32 HOH HOH . I 7 HOH A 29 329 21 HOH HOH . I 7 HOH A 30 330 25 HOH HOH . I 7 HOH A 31 331 29 HOH HOH . I 7 HOH A 32 332 55 HOH HOH . I 7 HOH A 33 333 40 HOH HOH . I 7 HOH A 34 334 35 HOH HOH . I 7 HOH A 35 335 23 HOH HOH . I 7 HOH A 36 336 34 HOH HOH . I 7 HOH A 37 337 36 HOH HOH . I 7 HOH A 38 338 18 HOH HOH . I 7 HOH A 39 339 24 HOH HOH . I 7 HOH A 40 340 51 HOH HOH . I 7 HOH A 41 341 28 HOH HOH . I 7 HOH A 42 342 44 HOH HOH . I 7 HOH A 43 343 11 HOH HOH . I 7 HOH A 44 344 54 HOH HOH . I 7 HOH A 45 345 37 HOH HOH . I 7 HOH A 46 346 19 HOH HOH . I 7 HOH A 47 347 10 HOH HOH . I 7 HOH A 48 348 8 HOH HOH . I 7 HOH A 49 349 48 HOH HOH . I 7 HOH A 50 350 53 HOH HOH . I 7 HOH A 51 351 52 HOH HOH . I 7 HOH A 52 352 22 HOH HOH . I 7 HOH A 53 353 45 HOH HOH . I 7 HOH A 54 354 42 HOH HOH . I 7 HOH A 55 355 50 HOH HOH . I 7 HOH A 56 356 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . F 5 30.193 -23.452 0.321 1 52.75 ? C1 D10 205 A 1 HETATM 2 C C2 D10 . . . F 5 28.753 -23.753 -0.012 1 50.29 ? C2 D10 205 A 1 HETATM 3 C C3 D10 . . . F 5 28.014 -24.635 0.96 1 52.94 ? C3 D10 205 A 1 HETATM 4 C C4 D10 . . . F 5 26.602 -24.912 0.509 1 44.5 ? C4 D10 205 A 1 HETATM 5 C C5 D10 . . . F 5 25.834 -25.885 1.374 1 49.31 ? C5 D10 205 A 1 HETATM 6 C C6 D10 . . . F 5 24.401 -26.059 0.939 1 49.6 ? C6 D10 205 A 1 HETATM 7 C C7 D10 . . . F 5 23.543 -26.874 1.867 1 44.02 ? C7 D10 205 A 1 HETATM 8 C C8 D10 . . . F 5 23.571 -28.368 1.641 1 62.87 ? C8 D10 205 A 1 HETATM 9 C C9 D10 . . . F 5 22.746 -28.86 0.48 1 48.16 ? C9 D10 205 A 1 HETATM 10 C C10 D10 . . . F 5 22.634 -30.369 0.416 1 45.56 ? C10 D10 205 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #