data_7OLQ # _model_server_result.job_id EtWW0X1q1QRgqum8qEVaLg _model_server_result.datetime_utc '2024-12-03 04:16:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7olq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7OLQ # _exptl.entry_id 7OLQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.331 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-Methoxydehydrocyclopeptin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OLQ _cell.length_a 73.32 _cell.length_b 121.27 _cell.length_c 66.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -73.32 0 -33.375 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 134 A HIS 134 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A OD1 ASP 136 A ASP 136 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 A NE2 HIS 211 A HIS 211 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 B NI NI . A NI 401 1_555 D O1 TRS . A TRS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 B NI NI . A NI 401 1_555 D O3 TRS . A TRS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc6 B NI NI . A NI 401 1_555 D N TRS . A TRS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'C18 H16 N2 O3' _chem_comp.formula_weight 308.331 _chem_comp.id 58J _chem_comp.mon_nstd_flag . _chem_comp.name 4-Methoxydehydrocyclopeptin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 58J doub 1 n y C19 C18 58J sing 2 n y C20 C1 58J sing 3 n y N17 C18 58J sing 4 n n N17 C15 58J sing 5 n n C18 C3 58J doub 6 n y C1 C2 58J doub 7 n y O16 C15 58J doub 8 n n C15 C7 58J sing 9 n n C3 C2 58J sing 10 n y C3 C4 58J sing 11 n n C7 C8 58J doub 12 z n C7 N6 58J sing 13 n n C4 N6 58J sing 14 n n C4 O5 58J doub 15 n n C8 C9 58J sing 16 n n N6 C23 58J sing 17 n n C9 C10 58J doub 18 n y C9 C14 58J sing 19 n y C10 C11 58J sing 20 n y C14 C13 58J doub 21 n y C11 C12 58J doub 22 n y C13 C12 58J sing 23 n y C12 O21 58J sing 24 n n O21 C22 58J sing 25 n n C8 H1 58J sing 26 n n C10 H2 58J sing 27 n n C13 H3 58J sing 28 n n C20 H4 58J sing 29 n n C22 H5 58J sing 30 n n C22 H6 58J sing 31 n n C22 H7 58J sing 32 n n N17 H8 58J sing 33 n n C19 H9 58J sing 34 n n C1 H10 58J sing 35 n n C2 H11 58J sing 36 n n C23 H12 58J sing 37 n n C23 H13 58J sing 38 n n C23 H14 58J sing 39 n n C14 H15 58J sing 40 n n C11 H16 58J sing 41 n n # _atom_sites.entry_id 7OLQ _atom_sites.fract_transf_matrix[1][1] 0.013639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 401 301 NI NI . C 3 58J A 1 402 303 58J LIG . D 4 TRS A 1 403 305 TRS TRS . E 5 BR A 1 404 1 BR BR . F 5 BR A 1 405 2 BR BR . G 6 HOH A 1 501 18 HOH HOH . G 6 HOH A 2 502 30 HOH HOH . G 6 HOH A 3 503 20 HOH HOH . G 6 HOH A 4 504 39 HOH HOH . G 6 HOH A 5 505 25 HOH HOH . G 6 HOH A 6 506 8 HOH HOH . G 6 HOH A 7 507 10 HOH HOH . G 6 HOH A 8 508 35 HOH HOH . G 6 HOH A 9 509 37 HOH HOH . G 6 HOH A 10 510 14 HOH HOH . G 6 HOH A 11 511 34 HOH HOH . G 6 HOH A 12 512 22 HOH HOH . G 6 HOH A 13 513 12 HOH HOH . G 6 HOH A 14 514 15 HOH HOH . G 6 HOH A 15 515 24 HOH HOH . G 6 HOH A 16 516 38 HOH HOH . G 6 HOH A 17 517 3 HOH HOH . G 6 HOH A 18 518 13 HOH HOH . G 6 HOH A 19 519 32 HOH HOH . G 6 HOH A 20 520 16 HOH HOH . G 6 HOH A 21 521 29 HOH HOH . G 6 HOH A 22 522 31 HOH HOH . G 6 HOH A 23 523 21 HOH HOH . G 6 HOH A 24 524 36 HOH HOH . G 6 HOH A 25 525 5 HOH HOH . G 6 HOH A 26 526 4 HOH HOH . G 6 HOH A 27 527 6 HOH HOH . G 6 HOH A 28 528 11 HOH HOH . G 6 HOH A 29 529 19 HOH HOH . G 6 HOH A 30 530 17 HOH HOH . G 6 HOH A 31 531 7 HOH HOH . G 6 HOH A 32 532 23 HOH HOH . G 6 HOH A 33 533 26 HOH HOH . G 6 HOH A 34 534 28 HOH HOH . G 6 HOH A 35 535 27 HOH HOH . G 6 HOH A 36 536 33 HOH HOH . G 6 HOH A 37 537 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 58J . . . C 3 -24.892 -20.357 -3.307 1 39.22 ? C4 58J 402 A 1 HETATM 2 C C7 58J . . . C 3 -25.202 -22.617 -3.616 1 38.92 ? C7 58J 402 A 1 HETATM 3 C C8 58J . . . C 3 -24.469 -23.689 -3.215 1 40.64 ? C8 58J 402 A 1 HETATM 4 C C10 58J . . . C 3 -23.527 -25.176 -1.481 1 43.81 ? C10 58J 402 A 1 HETATM 5 C C13 58J . . . C 3 -22.861 -23.087 0.2 1 42.88 ? C13 58J 402 A 1 HETATM 6 C C15 58J . . . C 3 -25.843 -22.683 -4.934 1 38.7 ? C15 58J 402 A 1 HETATM 7 C C20 58J . . . C 3 -23.19 -19.439 -7.125 1 41.48 ? C20 58J 402 A 1 HETATM 8 C C22 58J . . . C 3 -21.452 -23.664 2.658 1 41.05 ? C22 58J 402 A 1 HETATM 9 O O16 58J . . . C 3 -26.464 -23.702 -5.216 1 36.14 ? O16 58J 402 A 1 HETATM 10 N N17 58J . . . C 3 -25.705 -21.74 -5.883 1 39.31 ? N17 58J 402 A 1 HETATM 11 C C18 58J . . . C 3 -24.809 -20.715 -5.839 1 39.82 ? C18 58J 402 A 1 HETATM 12 C C3 58J . . . C 3 -24.321 -20.111 -4.672 1 40.03 ? C3 58J 402 A 1 HETATM 13 C C19 58J . . . C 3 -24.212 -20.381 -7.057 1 40.82 ? C19 58J 402 A 1 HETATM 14 C C1 58J . . . C 3 -22.737 -18.821 -5.966 1 41.56 ? C1 58J 402 A 1 HETATM 15 C C2 58J . . . C 3 -23.308 -19.153 -4.746 1 39.43 ? C2 58J 402 A 1 HETATM 16 N N6 58J . . . C 3 -25.356 -21.521 -2.884 1 38.89 ? N6 58J 402 A 1 HETATM 17 C C23 58J . . . C 3 -26.129 -21.581 -1.644 1 41.09 ? C23 58J 402 A 1 HETATM 18 O O5 58J . . . C 3 -25.006 -19.38 -2.577 1 39.09 ? O5 58J 402 A 1 HETATM 19 C C9 58J . . . C 3 -23.791 -23.875 -1.897 1 42.38 ? C9 58J 402 A 1 HETATM 20 C C14 58J . . . C 3 -23.441 -22.831 -1.037 1 43.07 ? C14 58J 402 A 1 HETATM 21 C C12 58J . . . C 3 -22.608 -24.392 0.609 1 42.04 ? C12 58J 402 A 1 HETATM 22 O O21 58J . . . C 3 -22.039 -24.668 1.83 1 40.89 ? O21 58J 402 A 1 HETATM 23 C C11 58J . . . C 3 -22.945 -25.438 -0.241 1 43.09 ? C11 58J 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 120 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 519 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #