data_7OLR # _model_server_result.job_id 77kAJXyElmC4HoZ2P-iXLQ _model_server_result.datetime_utc '2024-12-03 04:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7olr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7OLR # _exptl.entry_id 7OLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OLR _cell.length_a 73.31 _cell.length_b 115.9 _cell.length_c 66.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -73.31 0 -33.36 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 134 A HIS 134 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A OD1 ASP 136 A ASP 136 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A NE2 HIS 211 A HIS 211 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc4 B NI NI . A NI 401 1_555 C O1 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 B NI NI . A NI 401 1_555 C O5 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B NI NI . A NI 401 1_555 E O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 42 n n C1 O2 AKG sing 43 n n C1 C2 AKG sing 44 n n O2 HO2 AKG sing 45 n n C2 O5 AKG doub 46 n n C2 C3 AKG sing 47 n n C3 C4 AKG sing 48 n n C3 H31 AKG sing 49 n n C3 H32 AKG sing 50 n n C4 C5 AKG sing 51 n n C4 H41 AKG sing 52 n n C4 H42 AKG sing 53 n n C5 O3 AKG doub 54 n n C5 O4 AKG sing 55 n n O4 HO4 AKG sing 56 n n # _atom_sites.entry_id 7OLR _atom_sites.fract_transf_matrix[1][1] 0.013641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 401 301 NI NI . C 3 AKG A 1 402 302 AKG AKG . D 4 58J A 1 403 303 58J LIG . E 5 HOH A 1 501 14 HOH HOH . E 5 HOH A 2 502 23 HOH HOH . E 5 HOH A 3 503 18 HOH HOH . E 5 HOH A 4 504 10 HOH HOH . E 5 HOH A 5 505 19 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 3 HOH HOH . E 5 HOH A 8 508 1 HOH HOH . E 5 HOH A 9 509 2 HOH HOH . E 5 HOH A 10 510 20 HOH HOH . E 5 HOH A 11 511 13 HOH HOH . E 5 HOH A 12 512 7 HOH HOH . E 5 HOH A 13 513 4 HOH HOH . E 5 HOH A 14 514 8 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 5 HOH HOH . E 5 HOH A 17 517 17 HOH HOH . E 5 HOH A 18 518 21 HOH HOH . E 5 HOH A 19 519 22 HOH HOH . E 5 HOH A 20 520 9 HOH HOH . E 5 HOH A 21 521 25 HOH HOH . E 5 HOH A 22 522 12 HOH HOH . E 5 HOH A 23 523 24 HOH HOH . E 5 HOH A 24 524 11 HOH HOH . E 5 HOH A 25 525 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . C 3 -20.021 -21.098 -4.587 1 64.26 ? C1 AKG 402 A 1 HETATM 2 O O1 AKG . . . C 3 -21.068 -21.634 -4.956 1 62.69 ? O1 AKG 402 A 1 HETATM 3 O O2 AKG . . . C 3 -20.01 -20.044 -3.949 1 64.56 ? O2 AKG 402 A 1 HETATM 4 C C2 AKG . . . C 3 -18.884 -21.664 -4.896 1 63.97 ? C2 AKG 402 A 1 HETATM 5 O O5 AKG . . . C 3 -18.894 -22.785 -5.411 1 61.97 ? O5 AKG 402 A 1 HETATM 6 C C3 AKG . . . C 3 -17.546 -21.005 -4.668 1 67.03 ? C3 AKG 402 A 1 HETATM 7 C C4 AKG . . . C 3 -16.364 -21.949 -4.759 1 64.98 ? C4 AKG 402 A 1 HETATM 8 C C5 AKG . . . C 3 -15.019 -21.32 -4.434 1 63.36 ? C5 AKG 402 A 1 HETATM 9 O O3 AKG . . . C 3 -14.019 -21.704 -5.075 1 55.01 ? O3 AKG 402 A 1 HETATM 10 O O4 AKG . . . C 3 -14.971 -20.448 -3.54 1 66.8 ? O4 AKG 402 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #