data_7OLU # _model_server_result.job_id kJadnjvAdWJbgJ8AxO8PNQ _model_server_result.datetime_utc '2024-10-20 12:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7olu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7OLU # _exptl.entry_id 7OLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 319.395 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2-(4-(beta-L-fucopyranosylethynyl)phenyl)-2-methylpropan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OLU _cell.length_a 43.954 _cell.length_b 43.954 _cell.length_c 94.138 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 21.977 38.065281 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -21.977 38.065281 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H25 N O4' _chem_comp.formula_weight 319.395 _chem_comp.id VJT _chem_comp.mon_nstd_flag . _chem_comp.name (2-(4-(beta-L-fucopyranosylethynyl)phenyl)-2-methylpropan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2~{R},3~{S},4~{R},5~{S},6~{S})-2-[2-[4-(1-azanyl-2-methyl-propan-2-yl)phenyl]ethynyl]-6-methyl-oxane-3,4,5-triol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C15 VJT sing 376 n n C18 N1 VJT sing 377 n n C18 C15 VJT sing 378 n n C16 C15 VJT sing 379 n n C15 C12 VJT sing 380 n n C12 C13 VJT doub 381 n y C12 C11 VJT sing 382 n y C13 C14 VJT sing 383 n y C11 C10 VJT doub 384 n y C14 C9 VJT doub 385 n y C10 C9 VJT sing 386 n y C9 C8 VJT sing 387 n n C8 C7 VJT trip 388 n n C7 C1 VJT sing 389 n n C1 O5 VJT sing 390 n n C1 C2 VJT sing 391 n n O5 C5 VJT sing 392 n n C2 O2 VJT sing 393 n n C2 C3 VJT sing 394 n n O4 C4 VJT sing 395 n n C6 C5 VJT sing 396 n n C5 C4 VJT sing 397 n n C3 C4 VJT sing 398 n n C3 O3 VJT sing 399 n n N1 H1 VJT sing 400 n n N1 H2 VJT sing 401 n n C4 H4 VJT sing 402 n n C5 H5 VJT sing 403 n n C6 H6 VJT sing 404 n n C6 H7 VJT sing 405 n n C6 H8 VJT sing 406 n n C10 H9 VJT sing 407 n n C13 H10 VJT sing 408 n n C17 H11 VJT sing 409 n n C17 H12 VJT sing 410 n n C17 H13 VJT sing 411 n n C3 H14 VJT sing 412 n n C2 H15 VJT sing 413 n n C1 H16 VJT sing 414 n n O2 H17 VJT sing 415 n n O3 H18 VJT sing 416 n n O4 H19 VJT sing 417 n n C11 H20 VJT sing 418 n n C14 H21 VJT sing 419 n n C18 H22 VJT sing 420 n n C18 H23 VJT sing 421 n n C16 H24 VJT sing 422 n n C16 H25 VJT sing 423 n n C16 H26 VJT sing 424 n n # _atom_sites.entry_id 7OLU _atom_sites.fract_transf_matrix[1][1] 0.022751 _atom_sites.fract_transf_matrix[1][2] 0.013135 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VJT AAA 1 201 201 VJT LIG . C 3 HOH AAA 1 301 58 HOH HOH . C 3 HOH AAA 2 302 59 HOH HOH . C 3 HOH AAA 3 303 106 HOH HOH . C 3 HOH AAA 4 304 39 HOH HOH . C 3 HOH AAA 5 305 30 HOH HOH . C 3 HOH AAA 6 306 10 HOH HOH . C 3 HOH AAA 7 307 68 HOH HOH . C 3 HOH AAA 8 308 69 HOH HOH . C 3 HOH AAA 9 309 25 HOH HOH . C 3 HOH AAA 10 310 63 HOH HOH . C 3 HOH AAA 11 311 26 HOH HOH . C 3 HOH AAA 12 312 40 HOH HOH . C 3 HOH AAA 13 313 70 HOH HOH . C 3 HOH AAA 14 314 28 HOH HOH . C 3 HOH AAA 15 315 64 HOH HOH . C 3 HOH AAA 16 316 20 HOH HOH . C 3 HOH AAA 17 317 1 HOH HOH . C 3 HOH AAA 18 318 9 HOH HOH . C 3 HOH AAA 19 319 27 HOH HOH . C 3 HOH AAA 20 320 79 HOH HOH . C 3 HOH AAA 21 321 31 HOH HOH . C 3 HOH AAA 22 322 11 HOH HOH . C 3 HOH AAA 23 323 97 HOH HOH . C 3 HOH AAA 24 324 24 HOH HOH . C 3 HOH AAA 25 325 99 HOH HOH . C 3 HOH AAA 26 326 94 HOH HOH . C 3 HOH AAA 27 327 7 HOH HOH . C 3 HOH AAA 28 328 3 HOH HOH . C 3 HOH AAA 29 329 13 HOH HOH . C 3 HOH AAA 30 330 84 HOH HOH . C 3 HOH AAA 31 331 51 HOH HOH . C 3 HOH AAA 32 332 52 HOH HOH . C 3 HOH AAA 33 333 47 HOH HOH . C 3 HOH AAA 34 334 18 HOH HOH . C 3 HOH AAA 35 335 2 HOH HOH . C 3 HOH AAA 36 336 6 HOH HOH . C 3 HOH AAA 37 337 23 HOH HOH . C 3 HOH AAA 38 338 48 HOH HOH . C 3 HOH AAA 39 339 34 HOH HOH . C 3 HOH AAA 40 340 35 HOH HOH . C 3 HOH AAA 41 341 43 HOH HOH . C 3 HOH AAA 42 342 60 HOH HOH . C 3 HOH AAA 43 343 57 HOH HOH . C 3 HOH AAA 44 344 85 HOH HOH . C 3 HOH AAA 45 345 17 HOH HOH . C 3 HOH AAA 46 346 21 HOH HOH . C 3 HOH AAA 47 347 66 HOH HOH . C 3 HOH AAA 48 348 5 HOH HOH . C 3 HOH AAA 49 349 41 HOH HOH . C 3 HOH AAA 50 350 19 HOH HOH . C 3 HOH AAA 51 351 15 HOH HOH . C 3 HOH AAA 52 352 22 HOH HOH . C 3 HOH AAA 53 353 96 HOH HOH . C 3 HOH AAA 54 354 102 HOH HOH . C 3 HOH AAA 55 355 14 HOH HOH . C 3 HOH AAA 56 356 50 HOH HOH . C 3 HOH AAA 57 357 76 HOH HOH . C 3 HOH AAA 58 358 67 HOH HOH . C 3 HOH AAA 59 359 101 HOH HOH . C 3 HOH AAA 60 360 45 HOH HOH . C 3 HOH AAA 61 361 104 HOH HOH . C 3 HOH AAA 62 362 49 HOH HOH . C 3 HOH AAA 63 363 37 HOH HOH . C 3 HOH AAA 64 364 16 HOH HOH . C 3 HOH AAA 65 365 100 HOH HOH . C 3 HOH AAA 66 366 42 HOH HOH . C 3 HOH AAA 67 367 90 HOH HOH . C 3 HOH AAA 68 368 4 HOH HOH . C 3 HOH AAA 69 369 95 HOH HOH . C 3 HOH AAA 70 370 46 HOH HOH . C 3 HOH AAA 71 371 29 HOH HOH . C 3 HOH AAA 72 372 32 HOH HOH . C 3 HOH AAA 73 373 56 HOH HOH . C 3 HOH AAA 74 374 33 HOH HOH . C 3 HOH AAA 75 375 36 HOH HOH . C 3 HOH AAA 76 376 12 HOH HOH . C 3 HOH AAA 77 377 8 HOH HOH . C 3 HOH AAA 78 378 72 HOH HOH . C 3 HOH AAA 79 379 105 HOH HOH . C 3 HOH AAA 80 380 89 HOH HOH . C 3 HOH AAA 81 381 62 HOH HOH . C 3 HOH AAA 82 382 86 HOH HOH . C 3 HOH AAA 83 383 87 HOH HOH . C 3 HOH AAA 84 384 80 HOH HOH . C 3 HOH AAA 85 385 77 HOH HOH . C 3 HOH AAA 86 386 78 HOH HOH . C 3 HOH AAA 87 387 61 HOH HOH . C 3 HOH AAA 88 388 73 HOH HOH . C 3 HOH AAA 89 389 103 HOH HOH . C 3 HOH AAA 90 390 55 HOH HOH . C 3 HOH AAA 91 391 82 HOH HOH . C 3 HOH AAA 92 392 74 HOH HOH . C 3 HOH AAA 93 393 92 HOH HOH . C 3 HOH AAA 94 394 38 HOH HOH . C 3 HOH AAA 95 395 53 HOH HOH . C 3 HOH AAA 96 396 98 HOH HOH . C 3 HOH AAA 97 397 93 HOH HOH . C 3 HOH AAA 98 398 81 HOH HOH . C 3 HOH AAA 99 399 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VJT . . . B 2 6.292 8.439 1.319 1 51.31 0 N1 VJT 201 AAA 1 HETATM 2 C C4 VJT . . . B 2 5.938 15.234 10.976 1 24.51 0 C4 VJT 201 AAA 1 HETATM 3 C C5 VJT . . . B 2 7.196 14.426 10.748 1 27.07 0 C5 VJT 201 AAA 1 HETATM 4 C C6 VJT . . . B 2 8.436 15.275 10.694 1 24.7 0 C6 VJT 201 AAA 1 HETATM 5 C C7 VJT . . . B 2 5.978 12.228 8.056 1 26.84 0 C7 VJT 201 AAA 1 HETATM 6 C C8 VJT . . . B 2 5.865 11.782 6.967 1 22.33 0 C8 VJT 201 AAA 1 HETATM 7 C C10 VJT . . . B 2 4.978 10.142 5.364 1 30.6 0 C10 VJT 201 AAA 1 HETATM 8 C C13 VJT . . . B 2 5.694 11.843 3.278 1 29 0 C13 VJT 201 AAA 1 HETATM 9 C C15 VJT . . . B 2 4.738 10.3 1.483 1 34.45 0 C15 VJT 201 AAA 1 HETATM 10 C C17 VJT . . . B 2 4.334 11.535 0.672 1 42.28 0 C17 VJT 201 AAA 1 HETATM 11 O O5 VJT . . . B 2 7.101 13.762 9.479 1 24.88 0 O5 VJT 201 AAA 1 HETATM 12 C C3 VJT . . . B 2 4.744 14.305 10.934 1 22.91 0 C3 VJT 201 AAA 1 HETATM 13 C C2 VJT . . . B 2 4.668 13.508 9.667 1 25.14 0 C2 VJT 201 AAA 1 HETATM 14 C C1 VJT . . . B 2 6.011 12.817 9.401 1 25.65 0 C1 VJT 201 AAA 1 HETATM 15 O O2 VJT . . . B 2 3.61 12.571 9.743 1 24.85 0 O2 VJT 201 AAA 1 HETATM 16 O O3 VJT . . . B 2 3.531 15.056 11.093 1 22.76 0 O3 VJT 201 AAA 1 HETATM 17 O O4 VJT . . . B 2 5.887 16.242 9.972 1 26.41 0 O4 VJT 201 AAA 1 HETATM 18 C C9 VJT . . . B 2 5.622 11.346 5.634 1 25.35 0 C9 VJT 201 AAA 1 HETATM 19 C C11 VJT . . . B 2 4.688 9.79 4.045 1 26.63 0 C11 VJT 201 AAA 1 HETATM 20 C C12 VJT . . . B 2 5.031 10.641 2.963 1 30.92 0 C12 VJT 201 AAA 1 HETATM 21 C C14 VJT . . . B 2 5.982 12.178 4.571 1 30.64 0 C14 VJT 201 AAA 1 HETATM 22 C C18 VJT . . . B 2 6.053 9.799 0.853 1 44.41 0 C18 VJT 201 AAA 1 HETATM 23 C C16 VJT . . . B 2 3.606 9.277 1.366 1 44.7 0 C16 VJT 201 AAA 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #