data_7OM5
#
_model_server_result.job_id            GUarTFJPxda1YmZyHS8Ipw 
_model_server_result.datetime_utc      '2024-11-14 04:56:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7om5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7OM5 
#
_exptl.entry_id    7OM5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.48 
_cell.angle_gamma         90 
_cell.entry_id            7OM5 
_cell.length_a            38.539 
_cell.length_b            71.576 
_cell.length_c            53.204 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 95 A CYS 95 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf2 A SG CYS 22 A CYS 22 1_555 A SG CYS 95 A CYS 95 1_555 ? B ? ? B ? ? ? ? ? ? ? 2 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc1 A OE2 GLU 88 A GLU 88 1_555 E ZN ZN . B ZN 201 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
metalc ? metalc2 A OD2 ASP 98 A ASP 98 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc3 A OD2 ASP 110 A ASP 110 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc4 A NE2 HIS 123 A HIS 123 1_555 E ZN ZN . B ZN 201 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc5 D ZN ZN . A ZN 202 2_656 B OE2 GLU 88 B GLU 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc6 D ZN ZN . A ZN 202 2_656 B NE2 HIS 123 B HIS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc7 B OD1 ASP 98 B ASP 98 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc8 B OD2 ASP 110 B ASP 110 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7OM5 
_atom_sites.fract_transf_matrix[1][1]    0.025948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000671 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013971 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 201 GOL GOL . 
D 3 ZN A 1 202 2 ZN ZN . 
E 3 ZN B 1 201 1 ZN ZN . 
F 4 HOH A 1 301 104 HOH HOH . 
F 4 HOH A 2 302 178 HOH HOH . 
F 4 HOH A 3 303 44 HOH HOH . 
F 4 HOH A 4 304 101 HOH HOH . 
F 4 HOH A 5 305 149 HOH HOH . 
F 4 HOH A 6 306 80 HOH HOH . 
F 4 HOH A 7 307 157 HOH HOH . 
F 4 HOH A 8 308 83 HOH HOH . 
F 4 HOH A 9 309 61 HOH HOH . 
F 4 HOH A 10 310 105 HOH HOH . 
F 4 HOH A 11 311 123 HOH HOH . 
F 4 HOH A 12 312 156 HOH HOH . 
F 4 HOH A 13 313 173 HOH HOH . 
F 4 HOH A 14 314 168 HOH HOH . 
F 4 HOH A 15 315 21 HOH HOH . 
F 4 HOH A 16 316 52 HOH HOH . 
F 4 HOH A 17 317 65 HOH HOH . 
F 4 HOH A 18 318 140 HOH HOH . 
F 4 HOH A 19 319 48 HOH HOH . 
F 4 HOH A 20 320 171 HOH HOH . 
F 4 HOH A 21 321 67 HOH HOH . 
F 4 HOH A 22 322 151 HOH HOH . 
F 4 HOH A 23 323 112 HOH HOH . 
F 4 HOH A 24 324 2 HOH HOH . 
F 4 HOH A 25 325 25 HOH HOH . 
F 4 HOH A 26 326 5 HOH HOH . 
F 4 HOH A 27 327 159 HOH HOH . 
F 4 HOH A 28 328 77 HOH HOH . 
F 4 HOH A 29 329 14 HOH HOH . 
F 4 HOH A 30 330 64 HOH HOH . 
F 4 HOH A 31 331 134 HOH HOH . 
F 4 HOH A 32 332 9 HOH HOH . 
F 4 HOH A 33 333 4 HOH HOH . 
F 4 HOH A 34 334 146 HOH HOH . 
F 4 HOH A 35 335 172 HOH HOH . 
F 4 HOH A 36 336 33 HOH HOH . 
F 4 HOH A 37 337 70 HOH HOH . 
F 4 HOH A 38 338 81 HOH HOH . 
F 4 HOH A 39 339 27 HOH HOH . 
F 4 HOH A 40 340 20 HOH HOH . 
F 4 HOH A 41 341 94 HOH HOH . 
F 4 HOH A 42 342 133 HOH HOH . 
F 4 HOH A 43 343 145 HOH HOH . 
F 4 HOH A 44 344 95 HOH HOH . 
F 4 HOH A 45 345 150 HOH HOH . 
F 4 HOH A 46 346 24 HOH HOH . 
F 4 HOH A 47 347 69 HOH HOH . 
F 4 HOH A 48 348 7 HOH HOH . 
F 4 HOH A 49 349 86 HOH HOH . 
F 4 HOH A 50 350 40 HOH HOH . 
F 4 HOH A 51 351 38 HOH HOH . 
F 4 HOH A 52 352 177 HOH HOH . 
F 4 HOH A 53 353 49 HOH HOH . 
F 4 HOH A 54 354 163 HOH HOH . 
F 4 HOH A 55 355 22 HOH HOH . 
F 4 HOH A 56 356 10 HOH HOH . 
F 4 HOH A 57 357 160 HOH HOH . 
F 4 HOH A 58 358 58 HOH HOH . 
F 4 HOH A 59 359 144 HOH HOH . 
F 4 HOH A 60 360 88 HOH HOH . 
F 4 HOH A 61 361 59 HOH HOH . 
F 4 HOH A 62 362 84 HOH HOH . 
F 4 HOH A 63 363 23 HOH HOH . 
F 4 HOH A 64 364 113 HOH HOH . 
F 4 HOH A 65 365 56 HOH HOH . 
F 4 HOH A 66 366 18 HOH HOH . 
F 4 HOH A 67 367 78 HOH HOH . 
F 4 HOH A 68 368 55 HOH HOH . 
F 4 HOH A 69 369 103 HOH HOH . 
F 4 HOH A 70 370 53 HOH HOH . 
F 4 HOH A 71 371 175 HOH HOH . 
F 4 HOH A 72 372 91 HOH HOH . 
F 4 HOH A 73 373 30 HOH HOH . 
F 4 HOH A 74 374 51 HOH HOH . 
F 4 HOH A 75 375 63 HOH HOH . 
F 4 HOH A 76 376 119 HOH HOH . 
F 4 HOH A 77 377 136 HOH HOH . 
F 4 HOH A 78 378 39 HOH HOH . 
F 4 HOH A 79 379 155 HOH HOH . 
F 4 HOH A 80 380 99 HOH HOH . 
F 4 HOH A 81 381 108 HOH HOH . 
F 4 HOH A 82 382 126 HOH HOH . 
F 4 HOH A 83 383 93 HOH HOH . 
F 4 HOH A 84 384 165 HOH HOH . 
G 4 HOH B 1 301 161 HOH HOH . 
G 4 HOH B 2 302 176 HOH HOH . 
G 4 HOH B 3 303 89 HOH HOH . 
G 4 HOH B 4 304 120 HOH HOH . 
G 4 HOH B 5 305 129 HOH HOH . 
G 4 HOH B 6 306 154 HOH HOH . 
G 4 HOH B 7 307 132 HOH HOH . 
G 4 HOH B 8 308 1 HOH HOH . 
G 4 HOH B 9 309 46 HOH HOH . 
G 4 HOH B 10 310 72 HOH HOH . 
G 4 HOH B 11 311 170 HOH HOH . 
G 4 HOH B 12 312 174 HOH HOH . 
G 4 HOH B 13 313 142 HOH HOH . 
G 4 HOH B 14 314 36 HOH HOH . 
G 4 HOH B 15 315 92 HOH HOH . 
G 4 HOH B 16 316 82 HOH HOH . 
G 4 HOH B 17 317 167 HOH HOH . 
G 4 HOH B 18 318 116 HOH HOH . 
G 4 HOH B 19 319 16 HOH HOH . 
G 4 HOH B 20 320 28 HOH HOH . 
G 4 HOH B 21 321 147 HOH HOH . 
G 4 HOH B 22 322 66 HOH HOH . 
G 4 HOH B 23 323 73 HOH HOH . 
G 4 HOH B 24 324 107 HOH HOH . 
G 4 HOH B 25 325 62 HOH HOH . 
G 4 HOH B 26 326 128 HOH HOH . 
G 4 HOH B 27 327 130 HOH HOH . 
G 4 HOH B 28 328 60 HOH HOH . 
G 4 HOH B 29 329 8 HOH HOH . 
G 4 HOH B 30 330 54 HOH HOH . 
G 4 HOH B 31 331 43 HOH HOH . 
G 4 HOH B 32 332 37 HOH HOH . 
G 4 HOH B 33 333 125 HOH HOH . 
G 4 HOH B 34 334 100 HOH HOH . 
G 4 HOH B 35 335 114 HOH HOH . 
G 4 HOH B 36 336 121 HOH HOH . 
G 4 HOH B 37 337 98 HOH HOH . 
G 4 HOH B 38 338 139 HOH HOH . 
G 4 HOH B 39 339 87 HOH HOH . 
G 4 HOH B 40 340 6 HOH HOH . 
G 4 HOH B 41 341 106 HOH HOH . 
G 4 HOH B 42 342 90 HOH HOH . 
G 4 HOH B 43 343 118 HOH HOH . 
G 4 HOH B 44 344 162 HOH HOH . 
G 4 HOH B 45 345 68 HOH HOH . 
G 4 HOH B 46 346 166 HOH HOH . 
G 4 HOH B 47 347 76 HOH HOH . 
G 4 HOH B 48 348 47 HOH HOH . 
G 4 HOH B 49 349 3 HOH HOH . 
G 4 HOH B 50 350 31 HOH HOH . 
G 4 HOH B 51 351 35 HOH HOH . 
G 4 HOH B 52 352 85 HOH HOH . 
G 4 HOH B 53 353 29 HOH HOH . 
G 4 HOH B 54 354 115 HOH HOH . 
G 4 HOH B 55 355 17 HOH HOH . 
G 4 HOH B 56 356 109 HOH HOH . 
G 4 HOH B 57 357 110 HOH HOH . 
G 4 HOH B 58 358 97 HOH HOH . 
G 4 HOH B 59 359 102 HOH HOH . 
G 4 HOH B 60 360 42 HOH HOH . 
G 4 HOH B 61 361 127 HOH HOH . 
G 4 HOH B 62 362 12 HOH HOH . 
G 4 HOH B 63 363 34 HOH HOH . 
G 4 HOH B 64 364 79 HOH HOH . 
G 4 HOH B 65 365 13 HOH HOH . 
G 4 HOH B 66 366 32 HOH HOH . 
G 4 HOH B 67 367 117 HOH HOH . 
G 4 HOH B 68 368 131 HOH HOH . 
G 4 HOH B 69 369 71 HOH HOH . 
G 4 HOH B 70 370 111 HOH HOH . 
G 4 HOH B 71 371 124 HOH HOH . 
G 4 HOH B 72 372 11 HOH HOH . 
G 4 HOH B 73 373 26 HOH HOH . 
G 4 HOH B 74 374 141 HOH HOH . 
G 4 HOH B 75 375 41 HOH HOH . 
G 4 HOH B 76 376 75 HOH HOH . 
G 4 HOH B 77 377 57 HOH HOH . 
G 4 HOH B 78 378 45 HOH HOH . 
G 4 HOH B 79 379 15 HOH HOH . 
G 4 HOH B 80 380 19 HOH HOH . 
G 4 HOH B 81 381 50 HOH HOH . 
G 4 HOH B 82 382 164 HOH HOH . 
G 4 HOH B 83 383 153 HOH HOH . 
G 4 HOH B 84 384 138 HOH HOH . 
G 4 HOH B 85 385 137 HOH HOH . 
G 4 HOH B 86 386 135 HOH HOH . 
G 4 HOH B 87 387 122 HOH HOH . 
G 4 HOH B 88 388 169 HOH HOH . 
G 4 HOH B 89 389 152 HOH HOH . 
G 4 HOH B 90 390 96 HOH HOH . 
G 4 HOH B 91 391 143 HOH HOH . 
G 4 HOH B 92 392 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -1.362 11.141 4.832 1 17.13 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . C 2 -2.052 11.13 6.086 1 15.12 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . C 2 0.04 10.578 4.988 1 16.53 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . C 2 0.062 9.194 5.36 1 16.06 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . C 2 0.829 11.337 6.028 1 18.91 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . C 2 2.195 10.943 6.016 1 18.62 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#