data_7OMU
#
_model_server_result.job_id            g1I50QJLVYzeIkF8LImkSg 
_model_server_result.datetime_utc      '2024-11-15 02:52:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7omu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    7OMU 
#
_exptl.entry_id    7OMU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OMU 
_cell.length_a            187.458 
_cell.length_b            187.458 
_cell.length_c            187.458 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OMU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     7OMU 
_atom_sites.fract_transf_matrix[1][1]    0.005335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 APR AAA 1 501 501 APR APR . 
D 2 APR BBB 1 501 501 APR APR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . D 2 68.259 -48.178 11.116 1 159.47 0 N1 APR 501 BBB 1 
HETATM 2 C C2 APR . . . D 2 69.097 -48.906 11.866 1 165.23 0 C2 APR 501 BBB 1 
HETATM 3 N N3 APR . . . D 2 69.573 -50.133 11.655 1 172.34 0 N3 APR 501 BBB 1 
HETATM 4 C C4 APR . . . D 2 69.088 -50.641 10.509 1 177 0 C4 APR 501 BBB 1 
HETATM 5 C C5 APR . . . D 2 68.219 -50.018 9.635 1 174.41 0 C5 APR 501 BBB 1 
HETATM 6 C C6 APR . . . D 2 67.789 -48.716 9.964 1 163.59 0 C6 APR 501 BBB 1 
HETATM 7 N N6 APR . . . D 2 66.952 -48.002 9.215 1 156.95 0 N6 APR 501 BBB 1 
HETATM 8 N N7 APR . . . D 2 67.942 -50.852 8.559 1 180.05 0 N7 APR 501 BBB 1 
HETATM 9 C C8 APR . . . D 2 68.631 -51.946 8.795 1 180.53 0 C8 APR 501 BBB 1 
HETATM 10 N N9 APR . . . D 2 69.351 -51.875 9.969 1 181.13 0 N9 APR 501 BBB 1 
HETATM 11 C C1' APR . . . D 2 70.227 -52.906 10.546 1 185.03 0 C1' APR 501 BBB 1 
HETATM 12 C C2' APR . . . D 2 69.876 -54.337 10.146 1 185.57 0 C2' APR 501 BBB 1 
HETATM 13 O O2' APR . . . D 2 68.946 -54.889 11.053 1 182.89 0 O2' APR 501 BBB 1 
HETATM 14 C C3' APR . . . D 2 71.235 -55.055 10.168 1 187.33 0 C3' APR 501 BBB 1 
HETATM 15 O O3' APR . . . D 2 71.374 -55.904 11.301 1 186.37 0 O3' APR 501 BBB 1 
HETATM 16 O O4' APR . . . D 2 71.535 -52.693 10.075 1 188.67 0 O4' APR 501 BBB 1 
HETATM 17 C C4' APR . . . D 2 72.281 -53.928 10.206 1 188.89 0 C4' APR 501 BBB 1 
HETATM 18 C C5' APR . . . D 2 73.356 -53.984 9.145 1 191.56 0 C5' APR 501 BBB 1 
HETATM 19 O O5' APR . . . D 2 72.764 -53.826 7.824 1 193.66 0 O5' APR 501 BBB 1 
HETATM 20 P PA APR . . . D 2 73.21 -54.78 6.606 1 195.72 0 PA APR 501 BBB 1 
HETATM 21 O O1A APR . . . D 2 72.838 -54.13 5.314 1 192.56 0 O1A APR 501 BBB 1 
HETATM 22 O O2A APR . . . D 2 72.7 -56.163 6.853 1 194.51 0 O2A APR 501 BBB 1 
HETATM 23 O O3A APR . . . D 2 74.817 -54.761 6.741 1 197.51 0 O3A APR 501 BBB 1 
HETATM 24 P PB APR . . . D 2 76.03 -55.795 6.491 1 194.44 0 PB APR 501 BBB 1 
HETATM 25 O O1B APR . . . D 2 75.861 -56.951 7.423 1 190.13 0 O1B APR 501 BBB 1 
HETATM 26 O O2B APR . . . D 2 77.328 -55.058 6.546 1 190.29 0 O2B APR 501 BBB 1 
HETATM 27 O O5D APR . . . D 2 75.756 -56.28 4.98 1 194.73 0 O5D APR 501 BBB 1 
HETATM 28 C C5D APR . . . D 2 76.313 -55.55 3.848 1 188.99 0 C5D APR 501 BBB 1 
HETATM 29 O O4D APR . . . D 2 74.45 -56.111 2.416 1 184.5 0 O4D APR 501 BBB 1 
HETATM 30 O O1D APR . . . D 2 73.645 -53.951 2.564 1 185.02 0 O1D APR 501 BBB 1 
HETATM 31 C C1D APR . . . D 2 74.132 -54.912 1.697 1 184.56 0 C1D APR 501 BBB 1 
HETATM 32 O O2D APR . . . D 2 75.33 -54.038 -0.299 1 174.38 0 O2D APR 501 BBB 1 
HETATM 33 C C2D APR . . . D 2 75.443 -54.427 1.057 1 184.19 0 C2D APR 501 BBB 1 
HETATM 34 O O3D APR . . . D 2 76.375 -56.533 0.205 1 186.32 0 O3D APR 501 BBB 1 
HETATM 35 C C3D APR . . . D 2 76.418 -55.585 1.262 1 185.02 0 C3D APR 501 BBB 1 
HETATM 36 C C4D APR . . . D 2 75.883 -56.207 2.556 1 186.14 0 C4D APR 501 BBB 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           622 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           36 
#