data_7OMY # _model_server_result.job_id 69mw6S8Puo_qD4c0F6TfLw _model_server_result.datetime_utc '2024-11-15 00:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7omy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7OMY # _exptl.entry_id 7OMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 662.46 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.461 _cell.angle_gamma 90 _cell.entry_id 7OMY _cell.length_a 42.499 _cell.length_b 39.104 _cell.length_c 61.636 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H30 N7 O13 P2 1' _chem_comp.formula_weight 662.46 _chem_comp.id CNA _chem_comp.mon_nstd_flag . _chem_comp.name CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3B C3B CNA sing 70 n n O2B C2B CNA sing 71 n n C3B C2B CNA sing 72 n n C3B C4B CNA sing 73 n n C2B C1B CNA sing 74 n n N3A C2A CNA doub 75 n y N3A C4A CNA sing 76 n y C2A N1A CNA sing 77 n y C1B N9A CNA sing 78 n n C1B O4B CNA sing 79 n n C4B O4B CNA sing 80 n n C4B C5B CNA sing 81 n n C4A N9A CNA sing 82 n y C4A C5A CNA doub 83 n y N9A C8A CNA sing 84 n y N1A C6A CNA doub 85 n y O2A PA CNA doub 86 n n O5B C5B CNA sing 87 n n O5B PA CNA sing 88 n n C5A C6A CNA sing 89 n y C5A N7A CNA sing 90 n y C6A N6A CNA sing 91 n n C8A N7A CNA doub 92 n y PA O3 CNA sing 93 n n PA O1A CNA sing 94 n n O3 PN CNA sing 95 n n O1N PN CNA doub 96 n n PN O2N CNA sing 97 n n PN O5D CNA sing 98 n n C5D O5D CNA sing 99 n n C5D C4D CNA sing 100 n n C3D O3D CNA sing 101 n n C3D C4D CNA sing 102 n n C3D C2D CNA sing 103 n n C4D C4' CNA sing 104 n n O2D C2D CNA sing 105 n n C2D C1D CNA sing 106 n n C4' C1D CNA sing 107 n n C1D N1N CNA sing 108 n n N1N C6N CNA doub 109 n y N1N C2N CNA sing 110 n y C6N C5N CNA sing 111 n y C2N C3N CNA doub 112 n y C5N C4N CNA doub 113 n y C3N C4N CNA sing 114 n y C3N C7N CNA sing 115 n n N7N C7N CNA sing 116 n n C7N O7N CNA doub 117 n n O1A H1 CNA sing 118 n n C5B H2 CNA sing 119 n n C5B H3 CNA sing 120 n n C4B H4 CNA sing 121 n n C3B H5 CNA sing 122 n n O3B H6 CNA sing 123 n n C2B H7 CNA sing 124 n n O2B H8 CNA sing 125 n n C1B H9 CNA sing 126 n n C8A H10 CNA sing 127 n n N6A H11 CNA sing 128 n n N6A H12 CNA sing 129 n n C2A H13 CNA sing 130 n n O2N H14 CNA sing 131 n n C5D H15 CNA sing 132 n n C5D H16 CNA sing 133 n n C4D H17 CNA sing 134 n n C4' H18 CNA sing 135 n n C4' H19 CNA sing 136 n n C3D H20 CNA sing 137 n n O3D H21 CNA sing 138 n n C2D H22 CNA sing 139 n n O2D H23 CNA sing 140 n n C1D H24 CNA sing 141 n n C2N H25 CNA sing 142 n n N7N H26 CNA sing 143 n n N7N H27 CNA sing 144 n n C4N H28 CNA sing 145 n n C5N H29 CNA sing 146 n n C6N H30 CNA sing 147 n n # _atom_sites.entry_id 7OMY _atom_sites.fract_transf_matrix[1][1] 0.02353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003921 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CNA AAA 1 301 300 CNA CNA . D 4 SCN AAA 1 302 400 SCN SCN . E 5 GOL AAA 1 303 500 GOL GOL . F 5 GOL AAA 1 304 501 GOL GOL . G 6 HOH AAA 1 401 102 HOH HOH . G 6 HOH AAA 2 402 68 HOH HOH . G 6 HOH AAA 3 403 120 HOH HOH . G 6 HOH AAA 4 404 150 HOH HOH . G 6 HOH AAA 5 405 67 HOH HOH . G 6 HOH AAA 6 406 142 HOH HOH . G 6 HOH AAA 7 407 115 HOH HOH . G 6 HOH AAA 8 408 31 HOH HOH . G 6 HOH AAA 9 409 43 HOH HOH . G 6 HOH AAA 10 410 15 HOH HOH . G 6 HOH AAA 11 411 23 HOH HOH . G 6 HOH AAA 12 412 112 HOH HOH . G 6 HOH AAA 13 413 103 HOH HOH . G 6 HOH AAA 14 414 122 HOH HOH . G 6 HOH AAA 15 415 83 HOH HOH . G 6 HOH AAA 16 416 21 HOH HOH . G 6 HOH AAA 17 417 79 HOH HOH . G 6 HOH AAA 18 418 100 HOH HOH . G 6 HOH AAA 19 419 104 HOH HOH . G 6 HOH AAA 20 420 132 HOH HOH . G 6 HOH AAA 21 421 34 HOH HOH . G 6 HOH AAA 22 422 22 HOH HOH . G 6 HOH AAA 23 423 75 HOH HOH . G 6 HOH AAA 24 424 49 HOH HOH . G 6 HOH AAA 25 425 47 HOH HOH . G 6 HOH AAA 26 426 56 HOH HOH . G 6 HOH AAA 27 427 4 HOH HOH . G 6 HOH AAA 28 428 72 HOH HOH . G 6 HOH AAA 29 429 5 HOH HOH . G 6 HOH AAA 30 430 32 HOH HOH . G 6 HOH AAA 31 431 19 HOH HOH . G 6 HOH AAA 32 432 18 HOH HOH . G 6 HOH AAA 33 433 1 HOH HOH . G 6 HOH AAA 34 434 94 HOH HOH . G 6 HOH AAA 35 435 87 HOH HOH . G 6 HOH AAA 36 436 117 HOH HOH . G 6 HOH AAA 37 437 12 HOH HOH . G 6 HOH AAA 38 438 14 HOH HOH . G 6 HOH AAA 39 439 95 HOH HOH . G 6 HOH AAA 40 440 40 HOH HOH . G 6 HOH AAA 41 441 6 HOH HOH . G 6 HOH AAA 42 442 119 HOH HOH . G 6 HOH AAA 43 443 93 HOH HOH . G 6 HOH AAA 44 444 25 HOH HOH . G 6 HOH AAA 45 445 3 HOH HOH . G 6 HOH AAA 46 446 50 HOH HOH . G 6 HOH AAA 47 447 10 HOH HOH . G 6 HOH AAA 48 448 110 HOH HOH . G 6 HOH AAA 49 449 7 HOH HOH . G 6 HOH AAA 50 450 89 HOH HOH . G 6 HOH AAA 51 451 128 HOH HOH . G 6 HOH AAA 52 452 151 HOH HOH . G 6 HOH AAA 53 453 84 HOH HOH . G 6 HOH AAA 54 454 48 HOH HOH . G 6 HOH AAA 55 455 2 HOH HOH . G 6 HOH AAA 56 456 70 HOH HOH . G 6 HOH AAA 57 457 60 HOH HOH . G 6 HOH AAA 58 458 16 HOH HOH . G 6 HOH AAA 59 459 26 HOH HOH . G 6 HOH AAA 60 460 82 HOH HOH . G 6 HOH AAA 61 461 125 HOH HOH . G 6 HOH AAA 62 462 30 HOH HOH . G 6 HOH AAA 63 463 8 HOH HOH . G 6 HOH AAA 64 464 131 HOH HOH . G 6 HOH AAA 65 465 39 HOH HOH . G 6 HOH AAA 66 466 24 HOH HOH . G 6 HOH AAA 67 467 97 HOH HOH . G 6 HOH AAA 68 468 85 HOH HOH . G 6 HOH AAA 69 469 11 HOH HOH . G 6 HOH AAA 70 470 137 HOH HOH . G 6 HOH AAA 71 471 62 HOH HOH . G 6 HOH AAA 72 472 63 HOH HOH . G 6 HOH AAA 73 473 107 HOH HOH . G 6 HOH AAA 74 474 20 HOH HOH . G 6 HOH AAA 75 475 88 HOH HOH . G 6 HOH AAA 76 476 127 HOH HOH . G 6 HOH AAA 77 477 92 HOH HOH . G 6 HOH AAA 78 478 116 HOH HOH . G 6 HOH AAA 79 479 17 HOH HOH . G 6 HOH AAA 80 480 28 HOH HOH . G 6 HOH AAA 81 481 35 HOH HOH . G 6 HOH AAA 82 482 54 HOH HOH . G 6 HOH AAA 83 483 33 HOH HOH . G 6 HOH AAA 84 484 9 HOH HOH . G 6 HOH AAA 85 485 71 HOH HOH . G 6 HOH AAA 86 486 59 HOH HOH . G 6 HOH AAA 87 487 146 HOH HOH . G 6 HOH AAA 88 488 141 HOH HOH . G 6 HOH AAA 89 489 121 HOH HOH . G 6 HOH AAA 90 490 53 HOH HOH . G 6 HOH AAA 91 491 114 HOH HOH . G 6 HOH AAA 92 492 46 HOH HOH . G 6 HOH AAA 93 493 86 HOH HOH . G 6 HOH AAA 94 494 64 HOH HOH . G 6 HOH AAA 95 495 45 HOH HOH . G 6 HOH AAA 96 496 77 HOH HOH . G 6 HOH AAA 97 497 36 HOH HOH . G 6 HOH AAA 98 498 98 HOH HOH . G 6 HOH AAA 99 499 73 HOH HOH . G 6 HOH AAA 100 500 52 HOH HOH . G 6 HOH AAA 101 501 123 HOH HOH . G 6 HOH AAA 102 502 133 HOH HOH . G 6 HOH AAA 103 503 29 HOH HOH . G 6 HOH AAA 104 504 41 HOH HOH . G 6 HOH AAA 105 505 91 HOH HOH . G 6 HOH AAA 106 506 96 HOH HOH . G 6 HOH AAA 107 507 55 HOH HOH . G 6 HOH AAA 108 508 37 HOH HOH . G 6 HOH AAA 109 509 147 HOH HOH . G 6 HOH AAA 110 510 66 HOH HOH . G 6 HOH AAA 111 511 65 HOH HOH . G 6 HOH AAA 112 512 144 HOH HOH . G 6 HOH AAA 113 513 51 HOH HOH . G 6 HOH AAA 114 514 99 HOH HOH . G 6 HOH AAA 115 515 58 HOH HOH . G 6 HOH AAA 116 516 69 HOH HOH . G 6 HOH AAA 117 517 57 HOH HOH . G 6 HOH AAA 118 518 90 HOH HOH . G 6 HOH AAA 119 519 74 HOH HOH . G 6 HOH AAA 120 520 126 HOH HOH . G 6 HOH AAA 121 521 124 HOH HOH . G 6 HOH AAA 122 522 78 HOH HOH . G 6 HOH AAA 123 523 61 HOH HOH . G 6 HOH AAA 124 524 149 HOH HOH . G 6 HOH AAA 125 525 135 HOH HOH . G 6 HOH AAA 126 526 42 HOH HOH . G 6 HOH AAA 127 527 113 HOH HOH . G 6 HOH AAA 128 528 129 HOH HOH . G 6 HOH AAA 129 529 106 HOH HOH . G 6 HOH AAA 130 530 108 HOH HOH . G 6 HOH AAA 131 531 143 HOH HOH . G 6 HOH AAA 132 532 111 HOH HOH . G 6 HOH AAA 133 533 101 HOH HOH . G 6 HOH AAA 134 534 139 HOH HOH . G 6 HOH AAA 135 535 130 HOH HOH . G 6 HOH AAA 136 536 134 HOH HOH . G 6 HOH AAA 137 537 105 HOH HOH . G 6 HOH AAA 138 538 148 HOH HOH . G 6 HOH AAA 139 539 38 HOH HOH . G 6 HOH AAA 140 540 136 HOH HOH . G 6 HOH AAA 141 541 118 HOH HOH . H 6 HOH AeA 1 701 109 HOH HOH . H 6 HOH AeA 2 702 44 HOH HOH . H 6 HOH AeA 3 703 81 HOH HOH . H 6 HOH AeA 4 704 138 HOH HOH . H 6 HOH AeA 5 705 76 HOH HOH . H 6 HOH AeA 6 706 27 HOH HOH . H 6 HOH AeA 7 707 13 HOH HOH . H 6 HOH AeA 8 708 140 HOH HOH . H 6 HOH AeA 9 709 145 HOH HOH . H 6 HOH AeA 10 710 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA CNA . . . C 3 1.143 6.128 9.694 1 17.21 0 PA CNA 301 AAA 1 HETATM 2 O O1A CNA . . . C 3 0.565 7.488 10.031 1 17.77 0 O1A CNA 301 AAA 1 HETATM 3 O O2A CNA . . . C 3 1.897 5.837 8.43 1 17.69 0 O2A CNA 301 AAA 1 HETATM 4 O O5B CNA . . . C 3 0.044 5.029 9.984 1 16.76 0 O5B CNA 301 AAA 1 HETATM 5 C C5B CNA . . . C 3 0.063 3.689 9.414 1 14.41 0 C5B CNA 301 AAA 1 HETATM 6 C C4B CNA . . . C 3 -0.811 2.905 10.349 1 13.14 0 C4B CNA 301 AAA 1 HETATM 7 O O4B CNA . . . C 3 -1.242 1.674 9.688 1 13.05 0 O4B CNA 301 AAA 1 HETATM 8 C C3B CNA . . . C 3 -0.093 2.433 11.62 1 12.07 0 C3B CNA 301 AAA 1 HETATM 9 O O3B CNA . . . C 3 -0.976 2.542 12.72 1 13.07 0 O3B CNA 301 AAA 1 HETATM 10 C C2B CNA . . . C 3 0.2 0.961 11.292 1 11.98 0 C2B CNA 301 AAA 1 HETATM 11 O O2B CNA . . . C 3 0.301 0.144 12.442 1 12.42 0 O2B CNA 301 AAA 1 HETATM 12 C C1B CNA . . . C 3 -1.09 0.607 10.571 1 12.55 0 C1B CNA 301 AAA 1 HETATM 13 N N9A CNA . . . C 3 -1.087 -0.605 9.807 1 12.17 0 N9A CNA 301 AAA 1 HETATM 14 C C8A CNA . . . C 3 -0.094 -1.111 9.019 1 12.58 0 C8A CNA 301 AAA 1 HETATM 15 N N7A CNA . . . C 3 -0.425 -2.208 8.408 1 12.58 0 N7A CNA 301 AAA 1 HETATM 16 C C5A CNA . . . C 3 -1.768 -2.388 8.727 1 12.7 0 C5A CNA 301 AAA 1 HETATM 17 C C6A CNA . . . C 3 -2.692 -3.381 8.337 1 13.85 0 C6A CNA 301 AAA 1 HETATM 18 N N6A CNA . . . C 3 -2.382 -4.386 7.518 1 13.89 0 N6A CNA 301 AAA 1 HETATM 19 N N1A CNA . . . C 3 -3.947 -3.276 8.815 1 13.18 0 N1A CNA 301 AAA 1 HETATM 20 C C2A CNA . . . C 3 -4.218 -2.274 9.679 1 13.68 0 C2A CNA 301 AAA 1 HETATM 21 N N3A CNA . . . C 3 -3.432 -1.285 10.127 1 13.7 0 N3A CNA 301 AAA 1 HETATM 22 C C4A CNA . . . C 3 -2.186 -1.419 9.616 1 12.96 0 C4A CNA 301 AAA 1 HETATM 23 O O3 CNA . . . C 3 2.219 5.779 10.859 1 16.24 0 O3 CNA 301 AAA 1 HETATM 24 P PN CNA . . . C 3 2.337 5.541 12.427 1 17.75 0 PN CNA 301 AAA 1 HETATM 25 O O1N CNA . . . C 3 1.017 5.969 13.001 1 20.55 0 O1N CNA 301 AAA 1 HETATM 26 O O2N CNA . . . C 3 2.879 4.162 12.677 1 18 0 O2N CNA 301 AAA 1 HETATM 27 O O5D CNA . . . C 3 3.434 6.588 12.861 1 16.07 0 O5D CNA 301 AAA 1 HETATM 28 C C5D CNA . . . C 3 3.345 7.978 12.684 1 17.13 0 C5D CNA 301 AAA 1 HETATM 29 C C4D CNA . . . C 3 4.638 8.423 12.053 1 17.09 0 C4D CNA 301 AAA 1 HETATM 30 C C4' CNA . . . C 3 5.881 8.082 12.904 1 16.55 0 C4' CNA 301 AAA 1 HETATM 31 C C3D CNA . . . C 3 4.869 7.841 10.665 1 17.92 0 C3D CNA 301 AAA 1 HETATM 32 O O3D CNA . . . C 3 5.536 8.826 9.874 1 19.29 0 O3D CNA 301 AAA 1 HETATM 33 C C2D CNA . . . C 3 5.704 6.603 10.988 1 17.17 0 C2D CNA 301 AAA 1 HETATM 34 O O2D CNA . . . C 3 6.36 6.235 9.799 1 17.49 0 O2D CNA 301 AAA 1 HETATM 35 C C1D CNA . . . C 3 6.714 7.06 12.062 1 17.04 0 C1D CNA 301 AAA 1 HETATM 36 N N1N CNA . . . C 3 7.281 5.948 12.908 1 15.59 0 N1N CNA 301 AAA 1 HETATM 37 C C2N CNA . . . C 3 6.39 5.121 13.552 1 14.76 0 C2N CNA 301 AAA 1 HETATM 38 C C3N CNA . . . C 3 6.859 4.038 14.287 1 14.05 0 C3N CNA 301 AAA 1 HETATM 39 C C7N CNA . . . C 3 5.87 3.108 14.941 1 13.64 0 C7N CNA 301 AAA 1 HETATM 40 O O7N CNA . . . C 3 6.312 2.412 15.848 1 13.52 0 O7N CNA 301 AAA 1 HETATM 41 N N7N CNA . . . C 3 4.609 3.054 14.498 1 11.63 0 N7N CNA 301 AAA 1 HETATM 42 C C4N CNA . . . C 3 8.221 3.795 14.399 1 14.93 0 C4N CNA 301 AAA 1 HETATM 43 C C5N CNA . . . C 3 9.108 4.637 13.766 1 15.06 0 C5N CNA 301 AAA 1 HETATM 44 C C6N CNA . . . C 3 8.626 5.712 13.083 1 15.66 0 C6N CNA 301 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #