data_7OMY
#
_model_server_result.job_id            iFaY276MOJwGRJuOLJXtRw 
_model_server_result.datetime_utc      '2024-11-15 00:33:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7omy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    7OMY 
#
_exptl.entry_id    7OMY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.461 
_cell.angle_gamma         90 
_cell.entry_id            7OMY 
_cell.length_a            42.499 
_cell.length_b            39.104 
_cell.length_c            61.636 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OMY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 356 n n 
C1 C2 GOL sing 357 n n 
C1 H11 GOL sing 358 n n 
C1 H12 GOL sing 359 n n 
O1 HO1 GOL sing 360 n n 
C2 O2 GOL sing 361 n n 
C2 C3 GOL sing 362 n n 
C2 H2 GOL sing 363 n n 
O2 HO2 GOL sing 364 n n 
C3 O3 GOL sing 365 n n 
C3 H31 GOL sing 366 n n 
C3 H32 GOL sing 367 n n 
O3 HO3 GOL sing 368 n n 
#
_atom_sites.entry_id                     7OMY 
_atom_sites.fract_transf_matrix[1][1]    0.02353 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003921 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016448 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CNA AAA 1 301 300 CNA CNA . 
D 4 SCN AAA 1 302 400 SCN SCN . 
E 5 GOL AAA 1 303 500 GOL GOL . 
F 5 GOL AAA 1 304 501 GOL GOL . 
G 6 HOH AAA 1 401 102 HOH HOH . 
G 6 HOH AAA 2 402 68 HOH HOH . 
G 6 HOH AAA 3 403 120 HOH HOH . 
G 6 HOH AAA 4 404 150 HOH HOH . 
G 6 HOH AAA 5 405 67 HOH HOH . 
G 6 HOH AAA 6 406 142 HOH HOH . 
G 6 HOH AAA 7 407 115 HOH HOH . 
G 6 HOH AAA 8 408 31 HOH HOH . 
G 6 HOH AAA 9 409 43 HOH HOH . 
G 6 HOH AAA 10 410 15 HOH HOH . 
G 6 HOH AAA 11 411 23 HOH HOH . 
G 6 HOH AAA 12 412 112 HOH HOH . 
G 6 HOH AAA 13 413 103 HOH HOH . 
G 6 HOH AAA 14 414 122 HOH HOH . 
G 6 HOH AAA 15 415 83 HOH HOH . 
G 6 HOH AAA 16 416 21 HOH HOH . 
G 6 HOH AAA 17 417 79 HOH HOH . 
G 6 HOH AAA 18 418 100 HOH HOH . 
G 6 HOH AAA 19 419 104 HOH HOH . 
G 6 HOH AAA 20 420 132 HOH HOH . 
G 6 HOH AAA 21 421 34 HOH HOH . 
G 6 HOH AAA 22 422 22 HOH HOH . 
G 6 HOH AAA 23 423 75 HOH HOH . 
G 6 HOH AAA 24 424 49 HOH HOH . 
G 6 HOH AAA 25 425 47 HOH HOH . 
G 6 HOH AAA 26 426 56 HOH HOH . 
G 6 HOH AAA 27 427 4 HOH HOH . 
G 6 HOH AAA 28 428 72 HOH HOH . 
G 6 HOH AAA 29 429 5 HOH HOH . 
G 6 HOH AAA 30 430 32 HOH HOH . 
G 6 HOH AAA 31 431 19 HOH HOH . 
G 6 HOH AAA 32 432 18 HOH HOH . 
G 6 HOH AAA 33 433 1 HOH HOH . 
G 6 HOH AAA 34 434 94 HOH HOH . 
G 6 HOH AAA 35 435 87 HOH HOH . 
G 6 HOH AAA 36 436 117 HOH HOH . 
G 6 HOH AAA 37 437 12 HOH HOH . 
G 6 HOH AAA 38 438 14 HOH HOH . 
G 6 HOH AAA 39 439 95 HOH HOH . 
G 6 HOH AAA 40 440 40 HOH HOH . 
G 6 HOH AAA 41 441 6 HOH HOH . 
G 6 HOH AAA 42 442 119 HOH HOH . 
G 6 HOH AAA 43 443 93 HOH HOH . 
G 6 HOH AAA 44 444 25 HOH HOH . 
G 6 HOH AAA 45 445 3 HOH HOH . 
G 6 HOH AAA 46 446 50 HOH HOH . 
G 6 HOH AAA 47 447 10 HOH HOH . 
G 6 HOH AAA 48 448 110 HOH HOH . 
G 6 HOH AAA 49 449 7 HOH HOH . 
G 6 HOH AAA 50 450 89 HOH HOH . 
G 6 HOH AAA 51 451 128 HOH HOH . 
G 6 HOH AAA 52 452 151 HOH HOH . 
G 6 HOH AAA 53 453 84 HOH HOH . 
G 6 HOH AAA 54 454 48 HOH HOH . 
G 6 HOH AAA 55 455 2 HOH HOH . 
G 6 HOH AAA 56 456 70 HOH HOH . 
G 6 HOH AAA 57 457 60 HOH HOH . 
G 6 HOH AAA 58 458 16 HOH HOH . 
G 6 HOH AAA 59 459 26 HOH HOH . 
G 6 HOH AAA 60 460 82 HOH HOH . 
G 6 HOH AAA 61 461 125 HOH HOH . 
G 6 HOH AAA 62 462 30 HOH HOH . 
G 6 HOH AAA 63 463 8 HOH HOH . 
G 6 HOH AAA 64 464 131 HOH HOH . 
G 6 HOH AAA 65 465 39 HOH HOH . 
G 6 HOH AAA 66 466 24 HOH HOH . 
G 6 HOH AAA 67 467 97 HOH HOH . 
G 6 HOH AAA 68 468 85 HOH HOH . 
G 6 HOH AAA 69 469 11 HOH HOH . 
G 6 HOH AAA 70 470 137 HOH HOH . 
G 6 HOH AAA 71 471 62 HOH HOH . 
G 6 HOH AAA 72 472 63 HOH HOH . 
G 6 HOH AAA 73 473 107 HOH HOH . 
G 6 HOH AAA 74 474 20 HOH HOH . 
G 6 HOH AAA 75 475 88 HOH HOH . 
G 6 HOH AAA 76 476 127 HOH HOH . 
G 6 HOH AAA 77 477 92 HOH HOH . 
G 6 HOH AAA 78 478 116 HOH HOH . 
G 6 HOH AAA 79 479 17 HOH HOH . 
G 6 HOH AAA 80 480 28 HOH HOH . 
G 6 HOH AAA 81 481 35 HOH HOH . 
G 6 HOH AAA 82 482 54 HOH HOH . 
G 6 HOH AAA 83 483 33 HOH HOH . 
G 6 HOH AAA 84 484 9 HOH HOH . 
G 6 HOH AAA 85 485 71 HOH HOH . 
G 6 HOH AAA 86 486 59 HOH HOH . 
G 6 HOH AAA 87 487 146 HOH HOH . 
G 6 HOH AAA 88 488 141 HOH HOH . 
G 6 HOH AAA 89 489 121 HOH HOH . 
G 6 HOH AAA 90 490 53 HOH HOH . 
G 6 HOH AAA 91 491 114 HOH HOH . 
G 6 HOH AAA 92 492 46 HOH HOH . 
G 6 HOH AAA 93 493 86 HOH HOH . 
G 6 HOH AAA 94 494 64 HOH HOH . 
G 6 HOH AAA 95 495 45 HOH HOH . 
G 6 HOH AAA 96 496 77 HOH HOH . 
G 6 HOH AAA 97 497 36 HOH HOH . 
G 6 HOH AAA 98 498 98 HOH HOH . 
G 6 HOH AAA 99 499 73 HOH HOH . 
G 6 HOH AAA 100 500 52 HOH HOH . 
G 6 HOH AAA 101 501 123 HOH HOH . 
G 6 HOH AAA 102 502 133 HOH HOH . 
G 6 HOH AAA 103 503 29 HOH HOH . 
G 6 HOH AAA 104 504 41 HOH HOH . 
G 6 HOH AAA 105 505 91 HOH HOH . 
G 6 HOH AAA 106 506 96 HOH HOH . 
G 6 HOH AAA 107 507 55 HOH HOH . 
G 6 HOH AAA 108 508 37 HOH HOH . 
G 6 HOH AAA 109 509 147 HOH HOH . 
G 6 HOH AAA 110 510 66 HOH HOH . 
G 6 HOH AAA 111 511 65 HOH HOH . 
G 6 HOH AAA 112 512 144 HOH HOH . 
G 6 HOH AAA 113 513 51 HOH HOH . 
G 6 HOH AAA 114 514 99 HOH HOH . 
G 6 HOH AAA 115 515 58 HOH HOH . 
G 6 HOH AAA 116 516 69 HOH HOH . 
G 6 HOH AAA 117 517 57 HOH HOH . 
G 6 HOH AAA 118 518 90 HOH HOH . 
G 6 HOH AAA 119 519 74 HOH HOH . 
G 6 HOH AAA 120 520 126 HOH HOH . 
G 6 HOH AAA 121 521 124 HOH HOH . 
G 6 HOH AAA 122 522 78 HOH HOH . 
G 6 HOH AAA 123 523 61 HOH HOH . 
G 6 HOH AAA 124 524 149 HOH HOH . 
G 6 HOH AAA 125 525 135 HOH HOH . 
G 6 HOH AAA 126 526 42 HOH HOH . 
G 6 HOH AAA 127 527 113 HOH HOH . 
G 6 HOH AAA 128 528 129 HOH HOH . 
G 6 HOH AAA 129 529 106 HOH HOH . 
G 6 HOH AAA 130 530 108 HOH HOH . 
G 6 HOH AAA 131 531 143 HOH HOH . 
G 6 HOH AAA 132 532 111 HOH HOH . 
G 6 HOH AAA 133 533 101 HOH HOH . 
G 6 HOH AAA 134 534 139 HOH HOH . 
G 6 HOH AAA 135 535 130 HOH HOH . 
G 6 HOH AAA 136 536 134 HOH HOH . 
G 6 HOH AAA 137 537 105 HOH HOH . 
G 6 HOH AAA 138 538 148 HOH HOH . 
G 6 HOH AAA 139 539 38 HOH HOH . 
G 6 HOH AAA 140 540 136 HOH HOH . 
G 6 HOH AAA 141 541 118 HOH HOH . 
H 6 HOH AeA 1 701 109 HOH HOH . 
H 6 HOH AeA 2 702 44 HOH HOH . 
H 6 HOH AeA 3 703 81 HOH HOH . 
H 6 HOH AeA 4 704 138 HOH HOH . 
H 6 HOH AeA 5 705 76 HOH HOH . 
H 6 HOH AeA 6 706 27 HOH HOH . 
H 6 HOH AeA 7 707 13 HOH HOH . 
H 6 HOH AeA 8 708 140 HOH HOH . 
H 6 HOH AeA 9 709 145 HOH HOH . 
H 6 HOH AeA 10 710 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 15.115 -1.021 24.481 1 34.12 0 C1 GOL 303 AAA 1 
HETATM 2 O O1 GOL . . . E 5 15.111 0.247 25.127 1 33.51 0 O1 GOL 303 AAA 1 
HETATM 3 C C2 GOL . . . E 5 16.508 -1.533 24.213 1 34.12 0 C2 GOL 303 AAA 1 
HETATM 4 O O2 GOL . . . E 5 17.14 -0.753 23.205 1 33.27 0 O2 GOL 303 AAA 1 
HETATM 5 C C3 GOL . . . E 5 16.501 -2.983 23.806 1 34.87 0 C3 GOL 303 AAA 1 
HETATM 6 O O3 GOL . . . E 5 15.414 -3.296 22.947 1 31.73 0 O3 GOL 303 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#