data_7ONM # _model_server_result.job_id s4tkAJ1tfOsluGsxMtKj2A _model_server_result.datetime_utc '2024-11-14 12:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7onm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 7ONM # _exptl.entry_id 7ONM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ONM _cell.length_a 42.172 _cell.length_b 73.959 _cell.length_c 74.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ONM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 90 A LEU 90 1_555 A N VI3 91 A VI3 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C VI3 91 A VI3 91 1_555 A N GLN 92 A GLN 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A SG VI3 91 A VI3 91 1_555 C N4 VKZ . A VKZ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N3 VKZ . A VKZ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7ONM _atom_sites.fract_transf_matrix[1][1] 0.023712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 299 ZN ZN . C 3 VKZ A 1 302 300 VKZ VKZ . D 4 EDO A 1 303 303 EDO EDO . E 4 EDO A 1 304 304 EDO EDO . F 4 EDO A 1 305 305 EDO EDO . G 4 EDO A 1 306 306 EDO EDO . H 4 EDO A 1 307 307 EDO EDO . I 5 HOH A 1 401 189 HOH HOH . I 5 HOH A 2 402 164 HOH HOH . I 5 HOH A 3 403 48 HOH HOH . I 5 HOH A 4 404 66 HOH HOH . I 5 HOH A 5 405 85 HOH HOH . I 5 HOH A 6 406 38 HOH HOH . I 5 HOH A 7 407 141 HOH HOH . I 5 HOH A 8 408 15 HOH HOH . I 5 HOH A 9 409 138 HOH HOH . I 5 HOH A 10 410 116 HOH HOH . I 5 HOH A 11 411 145 HOH HOH . I 5 HOH A 12 412 87 HOH HOH . I 5 HOH A 13 413 49 HOH HOH . I 5 HOH A 14 414 89 HOH HOH . I 5 HOH A 15 415 88 HOH HOH . I 5 HOH A 16 416 136 HOH HOH . I 5 HOH A 17 417 11 HOH HOH . I 5 HOH A 18 418 69 HOH HOH . I 5 HOH A 19 419 82 HOH HOH . I 5 HOH A 20 420 95 HOH HOH . I 5 HOH A 21 421 133 HOH HOH . I 5 HOH A 22 422 54 HOH HOH . I 5 HOH A 23 423 154 HOH HOH . I 5 HOH A 24 424 73 HOH HOH . I 5 HOH A 25 425 142 HOH HOH . I 5 HOH A 26 426 103 HOH HOH . I 5 HOH A 27 427 77 HOH HOH . I 5 HOH A 28 428 5 HOH HOH . I 5 HOH A 29 429 151 HOH HOH . I 5 HOH A 30 430 34 HOH HOH . I 5 HOH A 31 431 9 HOH HOH . I 5 HOH A 32 432 155 HOH HOH . I 5 HOH A 33 433 18 HOH HOH . I 5 HOH A 34 434 60 HOH HOH . I 5 HOH A 35 435 24 HOH HOH . I 5 HOH A 36 436 144 HOH HOH . I 5 HOH A 37 437 126 HOH HOH . I 5 HOH A 38 438 117 HOH HOH . I 5 HOH A 39 439 70 HOH HOH . I 5 HOH A 40 440 22 HOH HOH . I 5 HOH A 41 441 44 HOH HOH . I 5 HOH A 42 442 105 HOH HOH . I 5 HOH A 43 443 62 HOH HOH . I 5 HOH A 44 444 2 HOH HOH . I 5 HOH A 45 445 31 HOH HOH . I 5 HOH A 46 446 90 HOH HOH . I 5 HOH A 47 447 76 HOH HOH . I 5 HOH A 48 448 17 HOH HOH . I 5 HOH A 49 449 7 HOH HOH . I 5 HOH A 50 450 174 HOH HOH . I 5 HOH A 51 451 32 HOH HOH . I 5 HOH A 52 452 215 HOH HOH . I 5 HOH A 53 453 114 HOH HOH . I 5 HOH A 54 454 97 HOH HOH . I 5 HOH A 55 455 57 HOH HOH . I 5 HOH A 56 456 169 HOH HOH . I 5 HOH A 57 457 19 HOH HOH . I 5 HOH A 58 458 170 HOH HOH . I 5 HOH A 59 459 163 HOH HOH . I 5 HOH A 60 460 59 HOH HOH . I 5 HOH A 61 461 64 HOH HOH . I 5 HOH A 62 462 3 HOH HOH . I 5 HOH A 63 463 53 HOH HOH . I 5 HOH A 64 464 158 HOH HOH . I 5 HOH A 65 465 8 HOH HOH . I 5 HOH A 66 466 167 HOH HOH . I 5 HOH A 67 467 86 HOH HOH . I 5 HOH A 68 468 27 HOH HOH . I 5 HOH A 69 469 202 HOH HOH . I 5 HOH A 70 470 153 HOH HOH . I 5 HOH A 71 471 37 HOH HOH . I 5 HOH A 72 472 125 HOH HOH . I 5 HOH A 73 473 98 HOH HOH . I 5 HOH A 74 474 47 HOH HOH . I 5 HOH A 75 475 78 HOH HOH . I 5 HOH A 76 476 115 HOH HOH . I 5 HOH A 77 477 171 HOH HOH . I 5 HOH A 78 478 68 HOH HOH . I 5 HOH A 79 479 139 HOH HOH . I 5 HOH A 80 480 52 HOH HOH . I 5 HOH A 81 481 39 HOH HOH . I 5 HOH A 82 482 20 HOH HOH . I 5 HOH A 83 483 160 HOH HOH . I 5 HOH A 84 484 157 HOH HOH . I 5 HOH A 85 485 6 HOH HOH . I 5 HOH A 86 486 4 HOH HOH . I 5 HOH A 87 487 180 HOH HOH . I 5 HOH A 88 488 41 HOH HOH . I 5 HOH A 89 489 21 HOH HOH . I 5 HOH A 90 490 13 HOH HOH . I 5 HOH A 91 491 30 HOH HOH . I 5 HOH A 92 492 33 HOH HOH . I 5 HOH A 93 493 96 HOH HOH . I 5 HOH A 94 494 92 HOH HOH . I 5 HOH A 95 495 43 HOH HOH . I 5 HOH A 96 496 179 HOH HOH . I 5 HOH A 97 497 118 HOH HOH . I 5 HOH A 98 498 16 HOH HOH . I 5 HOH A 99 499 10 HOH HOH . I 5 HOH A 100 500 107 HOH HOH . I 5 HOH A 101 501 147 HOH HOH . I 5 HOH A 102 502 148 HOH HOH . I 5 HOH A 103 503 146 HOH HOH . I 5 HOH A 104 504 140 HOH HOH . I 5 HOH A 105 505 14 HOH HOH . I 5 HOH A 106 506 94 HOH HOH . I 5 HOH A 107 507 83 HOH HOH . I 5 HOH A 108 508 81 HOH HOH . I 5 HOH A 109 509 181 HOH HOH . I 5 HOH A 110 510 110 HOH HOH . I 5 HOH A 111 511 84 HOH HOH . I 5 HOH A 112 512 1 HOH HOH . I 5 HOH A 113 513 168 HOH HOH . I 5 HOH A 114 514 67 HOH HOH . I 5 HOH A 115 515 143 HOH HOH . I 5 HOH A 116 516 150 HOH HOH . I 5 HOH A 117 517 40 HOH HOH . I 5 HOH A 118 518 80 HOH HOH . I 5 HOH A 119 519 12 HOH HOH . I 5 HOH A 120 520 79 HOH HOH . I 5 HOH A 121 521 23 HOH HOH . I 5 HOH A 122 522 72 HOH HOH . I 5 HOH A 123 523 149 HOH HOH . I 5 HOH A 124 524 176 HOH HOH . I 5 HOH A 125 525 177 HOH HOH . I 5 HOH A 126 526 75 HOH HOH . I 5 HOH A 127 527 61 HOH HOH . I 5 HOH A 128 528 166 HOH HOH . I 5 HOH A 129 529 134 HOH HOH . I 5 HOH A 130 530 161 HOH HOH . I 5 HOH A 131 531 65 HOH HOH . I 5 HOH A 132 532 55 HOH HOH . I 5 HOH A 133 533 137 HOH HOH . I 5 HOH A 134 534 108 HOH HOH . I 5 HOH A 135 535 71 HOH HOH . I 5 HOH A 136 536 182 HOH HOH . I 5 HOH A 137 537 26 HOH HOH . I 5 HOH A 138 538 104 HOH HOH . I 5 HOH A 139 539 35 HOH HOH . I 5 HOH A 140 540 172 HOH HOH . I 5 HOH A 141 541 178 HOH HOH . I 5 HOH A 142 542 99 HOH HOH . I 5 HOH A 143 543 93 HOH HOH . I 5 HOH A 144 544 45 HOH HOH . I 5 HOH A 145 545 162 HOH HOH . I 5 HOH A 146 546 29 HOH HOH . I 5 HOH A 147 547 56 HOH HOH . I 5 HOH A 148 548 50 HOH HOH . I 5 HOH A 149 549 101 HOH HOH . I 5 HOH A 150 550 129 HOH HOH . I 5 HOH A 151 551 102 HOH HOH . I 5 HOH A 152 552 119 HOH HOH . I 5 HOH A 153 553 111 HOH HOH . I 5 HOH A 154 554 173 HOH HOH . I 5 HOH A 155 555 159 HOH HOH . I 5 HOH A 156 556 25 HOH HOH . I 5 HOH A 157 557 165 HOH HOH . I 5 HOH A 158 558 217 HOH HOH . I 5 HOH A 159 559 194 HOH HOH . I 5 HOH A 160 560 191 HOH HOH . I 5 HOH A 161 561 207 HOH HOH . I 5 HOH A 162 562 36 HOH HOH . I 5 HOH A 163 563 156 HOH HOH . I 5 HOH A 164 564 51 HOH HOH . I 5 HOH A 165 565 175 HOH HOH . I 5 HOH A 166 566 123 HOH HOH . I 5 HOH A 167 567 46 HOH HOH . I 5 HOH A 168 568 192 HOH HOH . I 5 HOH A 169 569 112 HOH HOH . I 5 HOH A 170 570 190 HOH HOH . I 5 HOH A 171 571 213 HOH HOH . I 5 HOH A 172 572 183 HOH HOH . I 5 HOH A 173 573 109 HOH HOH . I 5 HOH A 174 574 208 HOH HOH . I 5 HOH A 175 575 210 HOH HOH . I 5 HOH A 176 576 63 HOH HOH . I 5 HOH A 177 577 206 HOH HOH . I 5 HOH A 178 578 205 HOH HOH . I 5 HOH A 179 579 132 HOH HOH . I 5 HOH A 180 580 128 HOH HOH . I 5 HOH A 181 581 193 HOH HOH . I 5 HOH A 182 582 216 HOH HOH . I 5 HOH A 183 583 184 HOH HOH . I 5 HOH A 184 584 127 HOH HOH . I 5 HOH A 185 585 185 HOH HOH . I 5 HOH A 186 586 199 HOH HOH . I 5 HOH A 187 587 211 HOH HOH . I 5 HOH A 188 588 188 HOH HOH . I 5 HOH A 189 589 203 HOH HOH . I 5 HOH A 190 590 130 HOH HOH . I 5 HOH A 191 591 121 HOH HOH . I 5 HOH A 192 592 124 HOH HOH . I 5 HOH A 193 593 201 HOH HOH . I 5 HOH A 194 594 100 HOH HOH . I 5 HOH A 195 595 214 HOH HOH . I 5 HOH A 196 596 42 HOH HOH . I 5 HOH A 197 597 200 HOH HOH . I 5 HOH A 198 598 187 HOH HOH . I 5 HOH A 199 599 74 HOH HOH . I 5 HOH A 200 600 120 HOH HOH . I 5 HOH A 201 601 186 HOH HOH . I 5 HOH A 202 602 91 HOH HOH . I 5 HOH A 203 603 58 HOH HOH . I 5 HOH A 204 604 197 HOH HOH . I 5 HOH A 205 605 209 HOH HOH . I 5 HOH A 206 606 122 HOH HOH . I 5 HOH A 207 607 113 HOH HOH . I 5 HOH A 208 608 28 HOH HOH . I 5 HOH A 209 609 219 HOH HOH . I 5 HOH A 210 610 106 HOH HOH . I 5 HOH A 211 611 218 HOH HOH . I 5 HOH A 212 612 198 HOH HOH . I 5 HOH A 213 613 204 HOH HOH . I 5 HOH A 214 614 152 HOH HOH . I 5 HOH A 215 615 131 HOH HOH . I 5 HOH A 216 616 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 5.988 -5.95 26.501 1 41.09 0 C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 4 6.377 -5.602 25.175 1 44.09 0 O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 4 4.612 -5.488 26.79 1 40.72 0 C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 4 3.715 -5.705 25.712 1 37.34 0 O2 EDO 306 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #