data_7ONN # _model_server_result.job_id 0CrM1dg8w7S76L1uFXBWtw _model_server_result.datetime_utc '2024-11-12 20:14:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7onn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7ONN # _exptl.entry_id 7ONN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ONN _cell.length_a 110.383 _cell.length_b 110.383 _cell.length_c 142.07 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ONN _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 147 A SER 307 1_555 B C39 VL5 . A VL5 601 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A OG SER 147 A SER 307 1_555 B C39 VL5 . A VL5 601 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 7ONN _atom_sites.fract_transf_matrix[1][1] 0.009059 _atom_sites.fract_transf_matrix[1][2] 0.00523 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VL5 A 1 601 601 VL5 I49 . C 3 12P A 1 602 701 12P 12P . D 3 12P A 1 603 801 12P 12P . E 4 HOH A 1 701 17 HOH HOH . E 4 HOH A 2 702 61 HOH HOH . E 4 HOH A 3 703 60 HOH HOH . E 4 HOH A 4 704 58 HOH HOH . E 4 HOH A 5 705 59 HOH HOH . E 4 HOH A 6 706 52 HOH HOH . E 4 HOH A 7 707 15 HOH HOH . E 4 HOH A 8 708 21 HOH HOH . E 4 HOH A 9 709 38 HOH HOH . E 4 HOH A 10 710 35 HOH HOH . E 4 HOH A 11 711 34 HOH HOH . E 4 HOH A 12 712 16 HOH HOH . E 4 HOH A 13 713 20 HOH HOH . E 4 HOH A 14 714 47 HOH HOH . E 4 HOH A 15 715 41 HOH HOH . E 4 HOH A 16 716 23 HOH HOH . E 4 HOH A 17 717 8 HOH HOH . E 4 HOH A 18 718 24 HOH HOH . E 4 HOH A 19 719 28 HOH HOH . E 4 HOH A 20 720 1 HOH HOH . E 4 HOH A 21 721 50 HOH HOH . E 4 HOH A 22 722 36 HOH HOH . E 4 HOH A 23 723 42 HOH HOH . E 4 HOH A 24 724 40 HOH HOH . E 4 HOH A 25 725 3 HOH HOH . E 4 HOH A 26 726 18 HOH HOH . E 4 HOH A 27 727 9 HOH HOH . E 4 HOH A 28 728 44 HOH HOH . E 4 HOH A 29 729 45 HOH HOH . E 4 HOH A 30 730 5 HOH HOH . E 4 HOH A 31 731 55 HOH HOH . E 4 HOH A 32 732 11 HOH HOH . E 4 HOH A 33 733 29 HOH HOH . E 4 HOH A 34 734 39 HOH HOH . E 4 HOH A 35 735 4 HOH HOH . E 4 HOH A 36 736 56 HOH HOH . E 4 HOH A 37 737 33 HOH HOH . E 4 HOH A 38 738 6 HOH HOH . E 4 HOH A 39 739 13 HOH HOH . E 4 HOH A 40 740 7 HOH HOH . E 4 HOH A 41 741 10 HOH HOH . E 4 HOH A 42 742 46 HOH HOH . E 4 HOH A 43 743 26 HOH HOH . E 4 HOH A 44 744 12 HOH HOH . E 4 HOH A 45 745 22 HOH HOH . E 4 HOH A 46 746 27 HOH HOH . E 4 HOH A 47 747 31 HOH HOH . E 4 HOH A 48 748 43 HOH HOH . E 4 HOH A 49 749 2 HOH HOH . E 4 HOH A 50 750 51 HOH HOH . E 4 HOH A 51 751 32 HOH HOH . E 4 HOH A 52 752 14 HOH HOH . E 4 HOH A 53 753 49 HOH HOH . E 4 HOH A 54 754 25 HOH HOH . E 4 HOH A 55 755 48 HOH HOH . E 4 HOH A 56 756 37 HOH HOH . E 4 HOH A 57 757 54 HOH HOH . E 4 HOH A 58 758 57 HOH HOH . E 4 HOH A 59 759 53 HOH HOH . E 4 HOH A 60 760 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O37 12P . . . D 3 20.408 14.285 14.64 1 63.94 ? O37 12P 603 A 1 HETATM 2 C C36 12P . . . D 3 20.732 13.068 13.977 1 65.91 ? C36 12P 603 A 1 HETATM 3 C C35 12P . . . D 3 21.925 13.271 13.094 1 54.03 ? C35 12P 603 A 1 HETATM 4 O O34 12P . . . D 3 22.333 12.03 12.523 1 70.75 ? O34 12P 603 A 1 HETATM 5 C C33 12P . . . D 3 21.282 11.338 11.852 1 66.12 ? C33 12P 603 A 1 HETATM 6 C C32 12P . . . D 3 21.858 10.24 11 1 67.09 ? C32 12P 603 A 1 HETATM 7 O O31 12P . . . D 3 22.666 9.38 11.798 1 79.9 ? O31 12P 603 A 1 HETATM 8 C C30 12P . . . D 3 23.921 9.075 11.197 1 69.24 ? C30 12P 603 A 1 HETATM 9 C C29 12P . . . D 3 23.778 8 10.161 1 62.11 ? C29 12P 603 A 1 HETATM 10 O O28 12P . . . D 3 25.002 7.897 9.44 1 68.2 ? O28 12P 603 A 1 HETATM 11 C C27 12P . . . D 3 25.102 6.718 8.648 1 64.06 ? C27 12P 603 A 1 HETATM 12 C C26 12P . . . D 3 26.375 6.762 7.853 1 61.07 ? C26 12P 603 A 1 HETATM 13 O O25 12P . . . D 3 27.347 7.541 8.544 1 67.02 ? O25 12P 603 A 1 HETATM 14 C C24 12P . . . D 3 28.656 7.42 7.995 1 64.73 ? C24 12P 603 A 1 HETATM 15 C C23 12P . . . D 3 29.541 8.498 8.558 1 69.99 ? C23 12P 603 A 1 HETATM 16 O O22 12P . . . D 3 30.917 8.161 8.396 1 83.9 ? O22 12P 603 A 1 HETATM 17 C C21 12P . . . D 3 31.596 8.933 7.408 1 65.89 ? C21 12P 603 A 1 HETATM 18 C C20 12P . . . D 3 31.264 8.431 6.036 1 68.88 ? C20 12P 603 A 1 HETATM 19 O O19 12P . . . D 3 32.264 8.845 5.111 1 79.97 ? O19 12P 603 A 1 HETATM 20 C C18 12P . . . D 3 32.113 8.24 3.831 1 70.71 ? C18 12P 603 A 1 HETATM 21 C C17 12P . . . D 3 33.378 8.383 3.035 1 73.67 ? C17 12P 603 A 1 HETATM 22 O O16 12P . . . D 3 33.256 7.64 1.826 1 73.55 ? O16 12P 603 A 1 HETATM 23 C C15 12P . . . D 3 34.422 7.69 1.01 1 70.23 ? C15 12P 603 A 1 HETATM 24 C C14 12P . . . D 3 34.145 6.993 -0.293 1 66 ? C14 12P 603 A 1 HETATM 25 O O13 12P . . . D 3 35.265 7.112 -1.166 1 75.65 ? O13 12P 603 A 1 HETATM 26 C C12 12P . . . D 3 35.03 6.551 -2.455 1 43.51 ? C12 12P 603 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 26 #