data_7ONQ # _model_server_result.job_id ssUMK5TM3cCPP6vn9iF-0w _model_server_result.datetime_utc '2024-11-25 05:40:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7onq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7ONQ # _exptl.entry_id 7ONQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.896 _cell.angle_gamma 90 _cell.entry_id 7ONQ _cell.length_a 42.295 _cell.length_b 41.462 _cell.length_c 72.2 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ONQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 68 A VAL 68 1_555 A N VI3 69 A VI3 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C VI3 69 A VI3 69 1_555 A N PHE 70 A PHE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A SG VI3 69 A VI3 69 1_555 C N4 VKZ . A VKZ 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.567 ? covale ? covale4 A SG VI3 69 A VI3 69 1_555 C N4 VKZ . A VKZ 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.572 ? covale ? covale5 A SG VI3 69 A VI3 69 1_555 C N4 VKZ . A VKZ 302 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.747 ? metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N3 VKZ . A VKZ 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.118 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C N3 VKZ . A VKZ 302 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.92 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C N3 VKZ . A VKZ 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.96 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 C S1 VKZ . A VKZ 302 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.919 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7ONQ _atom_sites.fract_transf_matrix[1][1] 0.023643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005849 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 400 ZN ZN . C 3 VKZ A 1 302 500 VKZ VKZ . D 4 EDO A 1 303 501 EDO EDO . E 4 EDO A 1 304 502 EDO EDO . F 4 EDO A 1 305 503 EDO EDO . G 4 EDO A 1 306 504 EDO EDO . H 4 EDO A 1 307 505 EDO EDO . I 4 EDO A 1 308 506 EDO EDO . J 4 EDO A 1 309 507 EDO EDO . K 4 EDO A 1 310 508 EDO EDO . L 4 EDO A 1 311 509 EDO EDO . M 4 EDO A 1 312 510 EDO EDO . N 4 EDO A 1 313 511 EDO EDO . O 4 EDO A 1 314 513 EDO EDO . P 4 EDO A 1 315 514 EDO EDO . Q 4 EDO A 1 316 515 EDO EDO . R 4 EDO A 1 317 516 EDO EDO . S 4 EDO A 1 318 517 EDO EDO . T 4 EDO A 1 319 519 EDO EDO . U 4 EDO A 1 320 520 EDO EDO . V 5 HOH A 1 401 103 HOH HOH . V 5 HOH A 2 402 158 HOH HOH . V 5 HOH A 3 403 140 HOH HOH . V 5 HOH A 4 404 128 HOH HOH . V 5 HOH A 5 405 169 HOH HOH . V 5 HOH A 6 406 168 HOH HOH . V 5 HOH A 7 407 148 HOH HOH . V 5 HOH A 8 408 67 HOH HOH . V 5 HOH A 9 409 74 HOH HOH . V 5 HOH A 10 410 60 HOH HOH . V 5 HOH A 11 411 153 HOH HOH . V 5 HOH A 12 412 172 HOH HOH . V 5 HOH A 13 413 149 HOH HOH . V 5 HOH A 14 414 11 HOH HOH . V 5 HOH A 15 415 89 HOH HOH . V 5 HOH A 16 416 139 HOH HOH . V 5 HOH A 17 417 70 HOH HOH . V 5 HOH A 18 418 144 HOH HOH . V 5 HOH A 19 419 113 HOH HOH . V 5 HOH A 20 420 15 HOH HOH . V 5 HOH A 21 421 22 HOH HOH . V 5 HOH A 22 422 131 HOH HOH . V 5 HOH A 23 423 94 HOH HOH . V 5 HOH A 24 424 116 HOH HOH . V 5 HOH A 25 425 152 HOH HOH . V 5 HOH A 26 426 43 HOH HOH . V 5 HOH A 27 427 120 HOH HOH . V 5 HOH A 28 428 177 HOH HOH . V 5 HOH A 29 429 145 HOH HOH . V 5 HOH A 30 430 95 HOH HOH . V 5 HOH A 31 431 162 HOH HOH . V 5 HOH A 32 432 109 HOH HOH . V 5 HOH A 33 433 66 HOH HOH . V 5 HOH A 34 434 86 HOH HOH . V 5 HOH A 35 435 10 HOH HOH . V 5 HOH A 36 436 143 HOH HOH . V 5 HOH A 37 437 87 HOH HOH . V 5 HOH A 38 438 34 HOH HOH . V 5 HOH A 39 439 173 HOH HOH . V 5 HOH A 40 440 55 HOH HOH . V 5 HOH A 41 441 14 HOH HOH . V 5 HOH A 42 442 65 HOH HOH . V 5 HOH A 43 443 82 HOH HOH . V 5 HOH A 44 444 17 HOH HOH . V 5 HOH A 45 445 62 HOH HOH . V 5 HOH A 46 446 53 HOH HOH . V 5 HOH A 47 447 98 HOH HOH . V 5 HOH A 48 448 30 HOH HOH . V 5 HOH A 49 449 13 HOH HOH . V 5 HOH A 50 450 118 HOH HOH . V 5 HOH A 51 451 81 HOH HOH . V 5 HOH A 52 452 42 HOH HOH . V 5 HOH A 53 453 73 HOH HOH . V 5 HOH A 54 454 38 HOH HOH . V 5 HOH A 55 455 178 HOH HOH . V 5 HOH A 56 456 27 HOH HOH . V 5 HOH A 57 457 50 HOH HOH . V 5 HOH A 58 458 41 HOH HOH . V 5 HOH A 59 459 4 HOH HOH . V 5 HOH A 60 460 49 HOH HOH . V 5 HOH A 61 461 68 HOH HOH . V 5 HOH A 62 462 21 HOH HOH . V 5 HOH A 63 463 77 HOH HOH . V 5 HOH A 64 464 48 HOH HOH . V 5 HOH A 65 465 47 HOH HOH . V 5 HOH A 66 466 181 HOH HOH . V 5 HOH A 67 467 159 HOH HOH . V 5 HOH A 68 468 36 HOH HOH . V 5 HOH A 69 469 100 HOH HOH . V 5 HOH A 70 470 6 HOH HOH . V 5 HOH A 71 471 5 HOH HOH . V 5 HOH A 72 472 28 HOH HOH . V 5 HOH A 73 473 2 HOH HOH . V 5 HOH A 74 474 12 HOH HOH . V 5 HOH A 75 475 102 HOH HOH . V 5 HOH A 76 476 26 HOH HOH . V 5 HOH A 77 477 7 HOH HOH . V 5 HOH A 78 478 63 HOH HOH . V 5 HOH A 79 479 25 HOH HOH . V 5 HOH A 80 480 23 HOH HOH . V 5 HOH A 81 481 29 HOH HOH . V 5 HOH A 82 482 85 HOH HOH . V 5 HOH A 83 483 93 HOH HOH . V 5 HOH A 84 484 44 HOH HOH . V 5 HOH A 85 485 40 HOH HOH . V 5 HOH A 86 486 92 HOH HOH . V 5 HOH A 87 487 57 HOH HOH . V 5 HOH A 88 488 179 HOH HOH . V 5 HOH A 89 489 164 HOH HOH . V 5 HOH A 90 490 3 HOH HOH . V 5 HOH A 91 491 175 HOH HOH . V 5 HOH A 92 492 35 HOH HOH . V 5 HOH A 93 493 18 HOH HOH . V 5 HOH A 94 494 59 HOH HOH . V 5 HOH A 95 495 64 HOH HOH . V 5 HOH A 96 496 54 HOH HOH . V 5 HOH A 97 497 20 HOH HOH . V 5 HOH A 98 498 76 HOH HOH . V 5 HOH A 99 499 151 HOH HOH . V 5 HOH A 100 500 46 HOH HOH . V 5 HOH A 101 501 24 HOH HOH . V 5 HOH A 102 502 114 HOH HOH . V 5 HOH A 103 503 31 HOH HOH . V 5 HOH A 104 504 84 HOH HOH . V 5 HOH A 105 505 90 HOH HOH . V 5 HOH A 106 506 52 HOH HOH . V 5 HOH A 107 507 126 HOH HOH . V 5 HOH A 108 508 96 HOH HOH . V 5 HOH A 109 509 51 HOH HOH . V 5 HOH A 110 510 88 HOH HOH . V 5 HOH A 111 511 166 HOH HOH . V 5 HOH A 112 512 104 HOH HOH . V 5 HOH A 113 513 32 HOH HOH . V 5 HOH A 114 514 58 HOH HOH . V 5 HOH A 115 515 8 HOH HOH . V 5 HOH A 116 516 136 HOH HOH . V 5 HOH A 117 517 83 HOH HOH . V 5 HOH A 118 518 79 HOH HOH . V 5 HOH A 119 519 91 HOH HOH . V 5 HOH A 120 520 33 HOH HOH . V 5 HOH A 121 521 71 HOH HOH . V 5 HOH A 122 522 19 HOH HOH . V 5 HOH A 123 523 56 HOH HOH . V 5 HOH A 124 524 45 HOH HOH . V 5 HOH A 125 525 61 HOH HOH . V 5 HOH A 126 526 110 HOH HOH . V 5 HOH A 127 527 117 HOH HOH . V 5 HOH A 128 528 101 HOH HOH . V 5 HOH A 129 529 135 HOH HOH . V 5 HOH A 130 530 9 HOH HOH . V 5 HOH A 131 531 155 HOH HOH . V 5 HOH A 132 532 16 HOH HOH . V 5 HOH A 133 533 147 HOH HOH . V 5 HOH A 134 534 1 HOH HOH . V 5 HOH A 135 535 78 HOH HOH . V 5 HOH A 136 536 37 HOH HOH . V 5 HOH A 137 537 72 HOH HOH . V 5 HOH A 138 538 163 HOH HOH . V 5 HOH A 139 539 130 HOH HOH . V 5 HOH A 140 540 108 HOH HOH . V 5 HOH A 141 541 165 HOH HOH . V 5 HOH A 142 542 99 HOH HOH . V 5 HOH A 143 543 127 HOH HOH . V 5 HOH A 144 544 39 HOH HOH . V 5 HOH A 145 545 119 HOH HOH . V 5 HOH A 146 546 154 HOH HOH . V 5 HOH A 147 547 129 HOH HOH . V 5 HOH A 148 548 150 HOH HOH . V 5 HOH A 149 549 132 HOH HOH . V 5 HOH A 150 550 80 HOH HOH . V 5 HOH A 151 551 176 HOH HOH . V 5 HOH A 152 552 161 HOH HOH . V 5 HOH A 153 553 69 HOH HOH . V 5 HOH A 154 554 141 HOH HOH . V 5 HOH A 155 555 167 HOH HOH . V 5 HOH A 156 556 171 HOH HOH . V 5 HOH A 157 557 106 HOH HOH . V 5 HOH A 158 558 115 HOH HOH . V 5 HOH A 159 559 160 HOH HOH . V 5 HOH A 160 560 121 HOH HOH . V 5 HOH A 161 561 107 HOH HOH . V 5 HOH A 162 562 133 HOH HOH . V 5 HOH A 163 563 122 HOH HOH . V 5 HOH A 164 564 146 HOH HOH . V 5 HOH A 165 565 125 HOH HOH . V 5 HOH A 166 566 124 HOH HOH . V 5 HOH A 167 567 75 HOH HOH . V 5 HOH A 168 568 142 HOH HOH . V 5 HOH A 169 569 180 HOH HOH . V 5 HOH A 170 570 105 HOH HOH . V 5 HOH A 171 571 134 HOH HOH . V 5 HOH A 172 572 156 HOH HOH . V 5 HOH A 173 573 112 HOH HOH . V 5 HOH A 174 574 137 HOH HOH . V 5 HOH A 175 575 111 HOH HOH . V 5 HOH A 176 576 157 HOH HOH . V 5 HOH A 177 577 170 HOH HOH . V 5 HOH A 178 578 174 HOH HOH . V 5 HOH A 179 579 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 21.322 2.563 1.885 1 32.53 0 C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 4 22.554 2.482 2.568 1 33.99 0 O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 4 20.471 3.673 2.341 1 35.63 0 C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 4 20.261 3.629 3.743 1 36.46 0 O2 EDO 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #