data_7ONV # _model_server_result.job_id AzfyLJL17aNG1uA5HUbxaA _model_server_result.datetime_utc '2024-11-13 19:16:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7onv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7ONV # _exptl.entry_id 7ONV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ONV _cell.length_a 42.278 _cell.length_b 71.807 _cell.length_c 73.694 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ONV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 90 A LEU 90 1_555 A N VI3 91 A VI3 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C VI3 91 A VI3 91 1_555 A N GLN 92 A GLN 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale3 A SG VI3 91 A VI3 91 1_555 C N4 VKZ . A VKZ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C S1 VKZ . A VKZ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C N3 VKZ . A VKZ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7ONV _atom_sites.fract_transf_matrix[1][1] 0.023653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 299 ZN ZN . C 3 VKZ A 1 302 300 VKZ VKZ . D 4 EDO A 1 303 402 EDO EDO . E 4 EDO A 1 304 403 EDO EDO . F 4 EDO A 1 305 404 EDO EDO . G 4 EDO A 1 306 405 EDO EDO . H 4 EDO A 1 307 406 EDO EDO . I 4 EDO A 1 308 407 EDO EDO . J 4 EDO A 1 309 408 EDO EDO . K 4 EDO A 1 310 410 EDO EDO . L 4 EDO A 1 311 411 EDO EDO . M 5 HOH A 1 401 225 HOH HOH . M 5 HOH A 2 402 214 HOH HOH . M 5 HOH A 3 403 221 HOH HOH . M 5 HOH A 4 404 126 HOH HOH . M 5 HOH A 5 405 233 HOH HOH . M 5 HOH A 6 406 245 HOH HOH . M 5 HOH A 7 407 171 HOH HOH . M 5 HOH A 8 408 146 HOH HOH . M 5 HOH A 9 409 174 HOH HOH . M 5 HOH A 10 410 161 HOH HOH . M 5 HOH A 11 411 117 HOH HOH . M 5 HOH A 12 412 33 HOH HOH . M 5 HOH A 13 413 102 HOH HOH . M 5 HOH A 14 414 78 HOH HOH . M 5 HOH A 15 415 177 HOH HOH . M 5 HOH A 16 416 154 HOH HOH . M 5 HOH A 17 417 241 HOH HOH . M 5 HOH A 18 418 114 HOH HOH . M 5 HOH A 19 419 138 HOH HOH . M 5 HOH A 20 420 134 HOH HOH . M 5 HOH A 21 421 176 HOH HOH . M 5 HOH A 22 422 70 HOH HOH . M 5 HOH A 23 423 119 HOH HOH . M 5 HOH A 24 424 153 HOH HOH . M 5 HOH A 25 425 232 HOH HOH . M 5 HOH A 26 426 10 HOH HOH . M 5 HOH A 27 427 162 HOH HOH . M 5 HOH A 28 428 111 HOH HOH . M 5 HOH A 29 429 255 HOH HOH . M 5 HOH A 30 430 115 HOH HOH . M 5 HOH A 31 431 152 HOH HOH . M 5 HOH A 32 432 50 HOH HOH . M 5 HOH A 33 433 24 HOH HOH . M 5 HOH A 34 434 41 HOH HOH . M 5 HOH A 35 435 180 HOH HOH . M 5 HOH A 36 436 206 HOH HOH . M 5 HOH A 37 437 187 HOH HOH . M 5 HOH A 38 438 37 HOH HOH . M 5 HOH A 39 439 189 HOH HOH . M 5 HOH A 40 440 47 HOH HOH . M 5 HOH A 41 441 246 HOH HOH . M 5 HOH A 42 442 209 HOH HOH . M 5 HOH A 43 443 140 HOH HOH . M 5 HOH A 44 444 240 HOH HOH . M 5 HOH A 45 445 35 HOH HOH . M 5 HOH A 46 446 210 HOH HOH . M 5 HOH A 47 447 133 HOH HOH . M 5 HOH A 48 448 103 HOH HOH . M 5 HOH A 49 449 6 HOH HOH . M 5 HOH A 50 450 163 HOH HOH . M 5 HOH A 51 451 108 HOH HOH . M 5 HOH A 52 452 63 HOH HOH . M 5 HOH A 53 453 38 HOH HOH . M 5 HOH A 54 454 109 HOH HOH . M 5 HOH A 55 455 12 HOH HOH . M 5 HOH A 56 456 124 HOH HOH . M 5 HOH A 57 457 80 HOH HOH . M 5 HOH A 58 458 3 HOH HOH . M 5 HOH A 59 459 57 HOH HOH . M 5 HOH A 60 460 45 HOH HOH . M 5 HOH A 61 461 104 HOH HOH . M 5 HOH A 62 462 239 HOH HOH . M 5 HOH A 63 463 68 HOH HOH . M 5 HOH A 64 464 21 HOH HOH . M 5 HOH A 65 465 215 HOH HOH . M 5 HOH A 66 466 1 HOH HOH . M 5 HOH A 67 467 58 HOH HOH . M 5 HOH A 68 468 76 HOH HOH . M 5 HOH A 69 469 97 HOH HOH . M 5 HOH A 70 470 46 HOH HOH . M 5 HOH A 71 471 20 HOH HOH . M 5 HOH A 72 472 150 HOH HOH . M 5 HOH A 73 473 18 HOH HOH . M 5 HOH A 74 474 27 HOH HOH . M 5 HOH A 75 475 25 HOH HOH . M 5 HOH A 76 476 22 HOH HOH . M 5 HOH A 77 477 15 HOH HOH . M 5 HOH A 78 478 79 HOH HOH . M 5 HOH A 79 479 110 HOH HOH . M 5 HOH A 80 480 169 HOH HOH . M 5 HOH A 81 481 77 HOH HOH . M 5 HOH A 82 482 128 HOH HOH . M 5 HOH A 83 483 59 HOH HOH . M 5 HOH A 84 484 89 HOH HOH . M 5 HOH A 85 485 64 HOH HOH . M 5 HOH A 86 486 113 HOH HOH . M 5 HOH A 87 487 56 HOH HOH . M 5 HOH A 88 488 82 HOH HOH . M 5 HOH A 89 489 69 HOH HOH . M 5 HOH A 90 490 91 HOH HOH . M 5 HOH A 91 491 139 HOH HOH . M 5 HOH A 92 492 248 HOH HOH . M 5 HOH A 93 493 44 HOH HOH . M 5 HOH A 94 494 19 HOH HOH . M 5 HOH A 95 495 53 HOH HOH . M 5 HOH A 96 496 34 HOH HOH . M 5 HOH A 97 497 101 HOH HOH . M 5 HOH A 98 498 83 HOH HOH . M 5 HOH A 99 499 148 HOH HOH . M 5 HOH A 100 500 230 HOH HOH . M 5 HOH A 101 501 90 HOH HOH . M 5 HOH A 102 502 125 HOH HOH . M 5 HOH A 103 503 13 HOH HOH . M 5 HOH A 104 504 26 HOH HOH . M 5 HOH A 105 505 61 HOH HOH . M 5 HOH A 106 506 31 HOH HOH . M 5 HOH A 107 507 72 HOH HOH . M 5 HOH A 108 508 28 HOH HOH . M 5 HOH A 109 509 4 HOH HOH . M 5 HOH A 110 510 51 HOH HOH . M 5 HOH A 111 511 164 HOH HOH . M 5 HOH A 112 512 87 HOH HOH . M 5 HOH A 113 513 170 HOH HOH . M 5 HOH A 114 514 123 HOH HOH . M 5 HOH A 115 515 84 HOH HOH . M 5 HOH A 116 516 30 HOH HOH . M 5 HOH A 117 517 55 HOH HOH . M 5 HOH A 118 518 118 HOH HOH . M 5 HOH A 119 519 159 HOH HOH . M 5 HOH A 120 520 145 HOH HOH . M 5 HOH A 121 521 107 HOH HOH . M 5 HOH A 122 522 105 HOH HOH . M 5 HOH A 123 523 98 HOH HOH . M 5 HOH A 124 524 73 HOH HOH . M 5 HOH A 125 525 9 HOH HOH . M 5 HOH A 126 526 74 HOH HOH . M 5 HOH A 127 527 93 HOH HOH . M 5 HOH A 128 528 234 HOH HOH . M 5 HOH A 129 529 54 HOH HOH . M 5 HOH A 130 530 175 HOH HOH . M 5 HOH A 131 531 136 HOH HOH . M 5 HOH A 132 532 40 HOH HOH . M 5 HOH A 133 533 121 HOH HOH . M 5 HOH A 134 534 81 HOH HOH . M 5 HOH A 135 535 62 HOH HOH . M 5 HOH A 136 536 182 HOH HOH . M 5 HOH A 137 537 96 HOH HOH . M 5 HOH A 138 538 88 HOH HOH . M 5 HOH A 139 539 67 HOH HOH . M 5 HOH A 140 540 60 HOH HOH . M 5 HOH A 141 541 29 HOH HOH . M 5 HOH A 142 542 11 HOH HOH . M 5 HOH A 143 543 95 HOH HOH . M 5 HOH A 144 544 141 HOH HOH . M 5 HOH A 145 545 85 HOH HOH . M 5 HOH A 146 546 144 HOH HOH . M 5 HOH A 147 547 211 HOH HOH . M 5 HOH A 148 548 137 HOH HOH . M 5 HOH A 149 549 142 HOH HOH . M 5 HOH A 150 550 75 HOH HOH . M 5 HOH A 151 551 48 HOH HOH . M 5 HOH A 152 552 168 HOH HOH . M 5 HOH A 153 553 132 HOH HOH . M 5 HOH A 154 554 17 HOH HOH . M 5 HOH A 155 555 202 HOH HOH . M 5 HOH A 156 556 106 HOH HOH . M 5 HOH A 157 557 166 HOH HOH . M 5 HOH A 158 558 184 HOH HOH . M 5 HOH A 159 559 49 HOH HOH . M 5 HOH A 160 560 116 HOH HOH . M 5 HOH A 161 561 158 HOH HOH . M 5 HOH A 162 562 92 HOH HOH . M 5 HOH A 163 563 39 HOH HOH . M 5 HOH A 164 564 86 HOH HOH . M 5 HOH A 165 565 173 HOH HOH . M 5 HOH A 166 566 5 HOH HOH . M 5 HOH A 167 567 2 HOH HOH . M 5 HOH A 168 568 7 HOH HOH . M 5 HOH A 169 569 120 HOH HOH . M 5 HOH A 170 570 94 HOH HOH . M 5 HOH A 171 571 112 HOH HOH . M 5 HOH A 172 572 36 HOH HOH . M 5 HOH A 173 573 212 HOH HOH . M 5 HOH A 174 574 200 HOH HOH . M 5 HOH A 175 575 66 HOH HOH . M 5 HOH A 176 576 71 HOH HOH . M 5 HOH A 177 577 252 HOH HOH . M 5 HOH A 178 578 218 HOH HOH . M 5 HOH A 179 579 156 HOH HOH . M 5 HOH A 180 580 223 HOH HOH . M 5 HOH A 181 581 16 HOH HOH . M 5 HOH A 182 582 8 HOH HOH . M 5 HOH A 183 583 99 HOH HOH . M 5 HOH A 184 584 195 HOH HOH . M 5 HOH A 185 585 183 HOH HOH . M 5 HOH A 186 586 14 HOH HOH . M 5 HOH A 187 587 198 HOH HOH . M 5 HOH A 188 588 250 HOH HOH . M 5 HOH A 189 589 179 HOH HOH . M 5 HOH A 190 590 23 HOH HOH . M 5 HOH A 191 591 32 HOH HOH . M 5 HOH A 192 592 122 HOH HOH . M 5 HOH A 193 593 213 HOH HOH . M 5 HOH A 194 594 42 HOH HOH . M 5 HOH A 195 595 217 HOH HOH . M 5 HOH A 196 596 191 HOH HOH . M 5 HOH A 197 597 199 HOH HOH . M 5 HOH A 198 598 52 HOH HOH . M 5 HOH A 199 599 43 HOH HOH . M 5 HOH A 200 600 147 HOH HOH . M 5 HOH A 201 601 194 HOH HOH . M 5 HOH A 202 602 247 HOH HOH . M 5 HOH A 203 603 205 HOH HOH . M 5 HOH A 204 604 251 HOH HOH . M 5 HOH A 205 605 131 HOH HOH . M 5 HOH A 206 606 100 HOH HOH . M 5 HOH A 207 607 236 HOH HOH . M 5 HOH A 208 608 216 HOH HOH . M 5 HOH A 209 609 242 HOH HOH . M 5 HOH A 210 610 224 HOH HOH . M 5 HOH A 211 611 208 HOH HOH . M 5 HOH A 212 612 222 HOH HOH . M 5 HOH A 213 613 196 HOH HOH . M 5 HOH A 214 614 231 HOH HOH . M 5 HOH A 215 615 149 HOH HOH . M 5 HOH A 216 616 228 HOH HOH . M 5 HOH A 217 617 127 HOH HOH . M 5 HOH A 218 618 143 HOH HOH . M 5 HOH A 219 619 130 HOH HOH . M 5 HOH A 220 620 190 HOH HOH . M 5 HOH A 221 621 185 HOH HOH . M 5 HOH A 222 622 157 HOH HOH . M 5 HOH A 223 623 192 HOH HOH . M 5 HOH A 224 624 203 HOH HOH . M 5 HOH A 225 625 254 HOH HOH . M 5 HOH A 226 626 135 HOH HOH . M 5 HOH A 227 627 186 HOH HOH . M 5 HOH A 228 628 244 HOH HOH . M 5 HOH A 229 629 220 HOH HOH . M 5 HOH A 230 630 229 HOH HOH . M 5 HOH A 231 631 207 HOH HOH . M 5 HOH A 232 632 193 HOH HOH . M 5 HOH A 233 633 151 HOH HOH . M 5 HOH A 234 634 238 HOH HOH . M 5 HOH A 235 635 65 HOH HOH . M 5 HOH A 236 636 178 HOH HOH . M 5 HOH A 237 637 243 HOH HOH . M 5 HOH A 238 638 129 HOH HOH . M 5 HOH A 239 639 155 HOH HOH . M 5 HOH A 240 640 201 HOH HOH . M 5 HOH A 241 641 165 HOH HOH . M 5 HOH A 242 642 253 HOH HOH . M 5 HOH A 243 643 188 HOH HOH . M 5 HOH A 244 644 219 HOH HOH . M 5 HOH A 245 645 160 HOH HOH . M 5 HOH A 246 646 172 HOH HOH . M 5 HOH A 247 647 235 HOH HOH . M 5 HOH A 248 648 226 HOH HOH . M 5 HOH A 249 649 249 HOH HOH . M 5 HOH A 250 650 204 HOH HOH . M 5 HOH A 251 651 167 HOH HOH . M 5 HOH A 252 652 197 HOH HOH . M 5 HOH A 253 653 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 3.431 -0.816 18.374 1 27.71 0 C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 4 4.492 -1.766 18.326 1 29.43 0 O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 4 3.683 0.413 17.575 1 25.7 0 C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 4 3.557 0.254 16.154 1 26.4 0 O2 EDO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #