data_7ONX # _model_server_result.job_id K4xs9ASfhVwnun_h54i9XA _model_server_result.datetime_utc '2024-11-12 20:28:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7onx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7ONX # _exptl.entry_id 7ONX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.256 _cell.angle_gamma 90 _cell.entry_id 7ONX _cell.length_a 110.569 _cell.length_b 82.205 _cell.length_c 91.398 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ONX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 7ONX _atom_sites.fract_transf_matrix[1][1] 0.009044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004461 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 701 701 GOL GOL . C 2 GOL A 1 702 702 GOL GOL . D 2 GOL A 1 703 703 GOL GOL . E 2 GOL A 1 704 704 GOL GOL . F 3 TRS A 1 705 711 TRS TRS . G 4 HOH A 1 801 55 HOH HOH . G 4 HOH A 2 802 81 HOH HOH . G 4 HOH A 3 803 67 HOH HOH . G 4 HOH A 4 804 122 HOH HOH . G 4 HOH A 5 805 71 HOH HOH . G 4 HOH A 6 806 79 HOH HOH . G 4 HOH A 7 807 128 HOH HOH . G 4 HOH A 8 808 131 HOH HOH . G 4 HOH A 9 809 51 HOH HOH . G 4 HOH A 10 810 17 HOH HOH . G 4 HOH A 11 811 99 HOH HOH . G 4 HOH A 12 812 4 HOH HOH . G 4 HOH A 13 813 22 HOH HOH . G 4 HOH A 14 814 42 HOH HOH . G 4 HOH A 15 815 118 HOH HOH . G 4 HOH A 16 816 27 HOH HOH . G 4 HOH A 17 817 46 HOH HOH . G 4 HOH A 18 818 57 HOH HOH . G 4 HOH A 19 819 64 HOH HOH . G 4 HOH A 20 820 117 HOH HOH . G 4 HOH A 21 821 144 HOH HOH . G 4 HOH A 22 822 59 HOH HOH . G 4 HOH A 23 823 8 HOH HOH . G 4 HOH A 24 824 14 HOH HOH . G 4 HOH A 25 825 120 HOH HOH . G 4 HOH A 26 826 20 HOH HOH . G 4 HOH A 27 827 53 HOH HOH . G 4 HOH A 28 828 36 HOH HOH . G 4 HOH A 29 829 124 HOH HOH . G 4 HOH A 30 830 82 HOH HOH . G 4 HOH A 31 831 70 HOH HOH . G 4 HOH A 32 832 43 HOH HOH . G 4 HOH A 33 833 62 HOH HOH . G 4 HOH A 34 834 88 HOH HOH . G 4 HOH A 35 835 12 HOH HOH . G 4 HOH A 36 836 38 HOH HOH . G 4 HOH A 37 837 103 HOH HOH . G 4 HOH A 38 838 21 HOH HOH . G 4 HOH A 39 839 119 HOH HOH . G 4 HOH A 40 840 13 HOH HOH . G 4 HOH A 41 841 134 HOH HOH . G 4 HOH A 42 842 45 HOH HOH . G 4 HOH A 43 843 102 HOH HOH . G 4 HOH A 44 844 136 HOH HOH . G 4 HOH A 45 845 73 HOH HOH . G 4 HOH A 46 846 29 HOH HOH . G 4 HOH A 47 847 135 HOH HOH . G 4 HOH A 48 848 33 HOH HOH . G 4 HOH A 49 849 87 HOH HOH . G 4 HOH A 50 850 56 HOH HOH . G 4 HOH A 51 851 37 HOH HOH . G 4 HOH A 52 852 1 HOH HOH . G 4 HOH A 53 853 68 HOH HOH . G 4 HOH A 54 854 54 HOH HOH . G 4 HOH A 55 855 123 HOH HOH . G 4 HOH A 56 856 84 HOH HOH . G 4 HOH A 57 857 2 HOH HOH . G 4 HOH A 58 858 47 HOH HOH . G 4 HOH A 59 859 44 HOH HOH . G 4 HOH A 60 860 3 HOH HOH . G 4 HOH A 61 861 35 HOH HOH . G 4 HOH A 62 862 39 HOH HOH . G 4 HOH A 63 863 25 HOH HOH . G 4 HOH A 64 864 10 HOH HOH . G 4 HOH A 65 865 139 HOH HOH . G 4 HOH A 66 866 114 HOH HOH . G 4 HOH A 67 867 26 HOH HOH . G 4 HOH A 68 868 85 HOH HOH . G 4 HOH A 69 869 142 HOH HOH . G 4 HOH A 70 870 49 HOH HOH . G 4 HOH A 71 871 127 HOH HOH . G 4 HOH A 72 872 145 HOH HOH . G 4 HOH A 73 873 77 HOH HOH . G 4 HOH A 74 874 58 HOH HOH . G 4 HOH A 75 875 6 HOH HOH . G 4 HOH A 76 876 19 HOH HOH . G 4 HOH A 77 877 89 HOH HOH . G 4 HOH A 78 878 75 HOH HOH . G 4 HOH A 79 879 9 HOH HOH . G 4 HOH A 80 880 115 HOH HOH . G 4 HOH A 81 881 78 HOH HOH . G 4 HOH A 82 882 132 HOH HOH . G 4 HOH A 83 883 113 HOH HOH . G 4 HOH A 84 884 95 HOH HOH . G 4 HOH A 85 885 140 HOH HOH . G 4 HOH A 86 886 60 HOH HOH . G 4 HOH A 87 887 50 HOH HOH . G 4 HOH A 88 888 106 HOH HOH . G 4 HOH A 89 889 18 HOH HOH . G 4 HOH A 90 890 41 HOH HOH . G 4 HOH A 91 891 5 HOH HOH . G 4 HOH A 92 892 72 HOH HOH . G 4 HOH A 93 893 11 HOH HOH . G 4 HOH A 94 894 105 HOH HOH . G 4 HOH A 95 895 94 HOH HOH . G 4 HOH A 96 896 65 HOH HOH . G 4 HOH A 97 897 126 HOH HOH . G 4 HOH A 98 898 90 HOH HOH . G 4 HOH A 99 899 31 HOH HOH . G 4 HOH A 100 900 40 HOH HOH . G 4 HOH A 101 901 32 HOH HOH . G 4 HOH A 102 902 109 HOH HOH . G 4 HOH A 103 903 107 HOH HOH . G 4 HOH A 104 904 7 HOH HOH . G 4 HOH A 105 905 66 HOH HOH . G 4 HOH A 106 906 137 HOH HOH . G 4 HOH A 107 907 108 HOH HOH . G 4 HOH A 108 908 48 HOH HOH . G 4 HOH A 109 909 100 HOH HOH . G 4 HOH A 110 910 96 HOH HOH . G 4 HOH A 111 911 112 HOH HOH . G 4 HOH A 112 912 23 HOH HOH . G 4 HOH A 113 913 141 HOH HOH . G 4 HOH A 114 914 61 HOH HOH . G 4 HOH A 115 915 110 HOH HOH . G 4 HOH A 116 916 143 HOH HOH . G 4 HOH A 117 917 16 HOH HOH . G 4 HOH A 118 918 63 HOH HOH . G 4 HOH A 119 919 34 HOH HOH . G 4 HOH A 120 920 86 HOH HOH . G 4 HOH A 121 921 93 HOH HOH . G 4 HOH A 122 922 52 HOH HOH . G 4 HOH A 123 923 83 HOH HOH . G 4 HOH A 124 924 76 HOH HOH . G 4 HOH A 125 925 97 HOH HOH . G 4 HOH A 126 926 129 HOH HOH . G 4 HOH A 127 927 74 HOH HOH . G 4 HOH A 128 928 98 HOH HOH . G 4 HOH A 129 929 133 HOH HOH . G 4 HOH A 130 930 104 HOH HOH . G 4 HOH A 131 931 92 HOH HOH . G 4 HOH A 132 932 91 HOH HOH . G 4 HOH A 133 933 138 HOH HOH . G 4 HOH A 134 934 30 HOH HOH . G 4 HOH A 135 935 101 HOH HOH . G 4 HOH A 136 936 111 HOH HOH . G 4 HOH A 137 937 28 HOH HOH . G 4 HOH A 138 938 125 HOH HOH . G 4 HOH A 139 939 116 HOH HOH . G 4 HOH A 140 940 15 HOH HOH . G 4 HOH A 141 941 80 HOH HOH . G 4 HOH A 142 942 24 HOH HOH . G 4 HOH A 143 943 121 HOH HOH . G 4 HOH A 144 944 146 HOH HOH . G 4 HOH A 145 945 130 HOH HOH . G 4 HOH A 146 946 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 55.822 -9.072 12.093 1 70.16 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . B 2 54.603 -9.585 11.559 1 77.99 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . B 2 56.119 -7.68 11.576 1 74.12 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . B 2 56.144 -7.667 10.149 1 50.79 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . B 2 55.177 -6.617 12.101 1 68.25 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . B 2 55.302 -6.446 13.511 1 71.85 ? O3 GOL 701 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #