data_7OOE
#
_model_server_result.job_id            KOSnhnXXwIr1onYJrxLGeQ 
_model_server_result.datetime_utc      '2024-11-15 00:45:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ooe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":502}' 
#
_entry.id    7OOE 
#
_exptl.entry_id    7OOE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.216 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMP PHOSPHORAMIDATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OOE 
_cell.length_a            80.215 
_cell.length_b            102.678 
_cell.length_c            103.829 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OOE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,DA 1 1 
B,U,V,W,X,Y,Z,AA,BA,CA,EA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 364 A PRO 390 1_555 A N CSX 365 A CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 A C CSX 365 A CSX 391 1_555 A N LYS 366 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 B C PRO 364 B PRO 390 1_555 B N CSX 365 B CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 B C CSX 365 B CSX 391 1_555 B N LYS 366 B LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
#
_chem_comp.formula           'C10 H16 N6 O9 P2' 
_chem_comp.formula_weight    426.216 
_chem_comp.id                AN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMP PHOSPHORAMIDATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB AN2 sing 13 n n 
N3B H3B1 AN2 sing 14 n n 
N3B H3B2 AN2 sing 15 n n 
PB O2B AN2 sing 16 n n 
PB O1B AN2 doub 17 n n 
PB O3A AN2 sing 18 n n 
O2B HO2B AN2 sing 19 n n 
O3A PA AN2 sing 20 n n 
PA O1A AN2 doub 21 n n 
PA O2A AN2 sing 22 n n 
PA O5' AN2 sing 23 n n 
O2A HO2A AN2 sing 24 n n 
O5' C5' AN2 sing 25 n n 
C5' C4' AN2 sing 26 n n 
C5' "H5'1" AN2 sing 27 n n 
C5' "H5'2" AN2 sing 28 n n 
C4' O4' AN2 sing 29 n n 
C4' C3' AN2 sing 30 n n 
C4' H4' AN2 sing 31 n n 
O4' C1' AN2 sing 32 n n 
C3' O3' AN2 sing 33 n n 
C3' C2' AN2 sing 34 n n 
C3' H3' AN2 sing 35 n n 
O3' HA AN2 sing 36 n n 
C2' O2' AN2 sing 37 n n 
C2' C1' AN2 sing 38 n n 
C2' H2' AN2 sing 39 n n 
O2' HB AN2 sing 40 n n 
C1' N9 AN2 sing 41 n n 
C1' H1' AN2 sing 42 n n 
N9 C8 AN2 sing 43 n y 
N9 C4 AN2 sing 44 n y 
C8 N7 AN2 doub 45 n y 
C8 H8 AN2 sing 46 n n 
N7 C5 AN2 sing 47 n y 
C5 C4 AN2 doub 48 n y 
C5 C6 AN2 sing 49 n y 
C4 N3 AN2 sing 50 n y 
N3 C2 AN2 doub 51 n y 
C2 N1 AN2 sing 52 n y 
C2 H2 AN2 sing 53 n n 
N1 C6 AN2 doub 54 n y 
C6 N6 AN2 sing 55 n n 
N6 H6N1 AN2 sing 56 n n 
N6 H6N2 AN2 sing 57 n n 
#
_atom_sites.entry_id                     7OOE 
_atom_sites.fract_transf_matrix[1][1]    0.012466 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009631 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 504 GOL GOL . 
D 3 PG4 A 1 502 1001 PG4 PG4 . 
E 4 AN2 A 1 503 1301 AN2 AN2 . 
F 2 GOL A 1 504 1401 GOL GOL . 
G 2 GOL A 1 505 1501 GOL GOL . 
H 2 GOL A 1 506 1601 GOL GOL . 
I 2 GOL A 1 507 1701 GOL GOL . 
J 2 GOL A 1 508 1801 GOL GOL . 
K 5 JHJ A 1 509 1901 JHJ LIG . 
L 2 GOL A 1 510 2001 GOL GOL . 
M 2 GOL A 1 511 2101 GOL GOL . 
N 2 GOL A 1 512 2301 GOL GOL . 
O 2 GOL A 1 513 2501 GOL GOL . 
P 2 GOL A 1 514 2601 GOL GOL . 
Q 5 JHJ A 1 515 2701 JHJ LIG . 
R 6 PO4 A 1 516 1 PO4 PO4 . 
S 7 CL A 1 517 1 CL CL . 
T 7 CL A 1 518 3 CL CL . 
U 2 GOL B 1 501 503 GOL GOL . 
V 4 AN2 B 1 502 1101 AN2 AN2 . 
W 2 GOL B 1 503 1201 GOL GOL . 
X 2 GOL B 1 504 1401 GOL GOL . 
Y 2 GOL B 1 505 1601 GOL GOL . 
Z 2 GOL B 1 506 1701 GOL GOL . 
AA 2 GOL B 1 507 1901 GOL GOL . 
BA 6 PO4 B 1 508 2 PO4 PO4 . 
CA 7 CL B 1 509 2 CL CL . 
DA 8 HOH A 1 601 330 HOH HOH . 
DA 8 HOH A 2 602 352 HOH HOH . 
DA 8 HOH A 3 603 608 HOH HOH . 
DA 8 HOH A 4 604 108 HOH HOH . 
DA 8 HOH A 5 605 459 HOH HOH . 
DA 8 HOH A 6 606 316 HOH HOH . 
DA 8 HOH A 7 607 357 HOH HOH . 
DA 8 HOH A 8 608 443 HOH HOH . 
DA 8 HOH A 9 609 642 HOH HOH . 
DA 8 HOH A 10 610 321 HOH HOH . 
DA 8 HOH A 11 611 624 HOH HOH . 
DA 8 HOH A 12 612 447 HOH HOH . 
DA 8 HOH A 13 613 701 HOH HOH . 
DA 8 HOH A 14 614 636 HOH HOH . 
DA 8 HOH A 15 615 111 HOH HOH . 
DA 8 HOH A 16 616 699 HOH HOH . 
DA 8 HOH A 17 617 324 HOH HOH . 
DA 8 HOH A 18 618 634 HOH HOH . 
DA 8 HOH A 19 619 403 HOH HOH . 
DA 8 HOH A 20 620 671 HOH HOH . 
DA 8 HOH A 21 621 605 HOH HOH . 
DA 8 HOH A 22 622 680 HOH HOH . 
DA 8 HOH A 23 623 695 HOH HOH . 
DA 8 HOH A 24 624 728 HOH HOH . 
DA 8 HOH A 25 625 638 HOH HOH . 
DA 8 HOH A 26 626 342 HOH HOH . 
DA 8 HOH A 27 627 707 HOH HOH . 
DA 8 HOH A 28 628 406 HOH HOH . 
DA 8 HOH A 29 629 377 HOH HOH . 
DA 8 HOH A 30 630 708 HOH HOH . 
DA 8 HOH A 31 631 658 HOH HOH . 
DA 8 HOH A 32 632 333 HOH HOH . 
DA 8 HOH A 33 633 332 HOH HOH . 
DA 8 HOH A 34 634 323 HOH HOH . 
DA 8 HOH A 35 635 435 HOH HOH . 
DA 8 HOH A 36 636 712 HOH HOH . 
DA 8 HOH A 37 637 309 HOH HOH . 
DA 8 HOH A 38 638 668 HOH HOH . 
DA 8 HOH A 39 639 768 HOH HOH . 
DA 8 HOH A 40 640 689 HOH HOH . 
DA 8 HOH A 41 641 686 HOH HOH . 
DA 8 HOH A 42 642 715 HOH HOH . 
DA 8 HOH A 43 643 322 HOH HOH . 
DA 8 HOH A 44 644 720 HOH HOH . 
DA 8 HOH A 45 645 675 HOH HOH . 
DA 8 HOH A 46 646 395 HOH HOH . 
DA 8 HOH A 47 647 328 HOH HOH . 
DA 8 HOH A 48 648 289 HOH HOH . 
DA 8 HOH A 49 649 263 HOH HOH . 
DA 8 HOH A 50 650 414 HOH HOH . 
DA 8 HOH A 51 651 390 HOH HOH . 
DA 8 HOH A 52 652 734 HOH HOH . 
DA 8 HOH A 53 653 752 HOH HOH . 
DA 8 HOH A 54 654 27 HOH HOH . 
DA 8 HOH A 55 655 43 HOH HOH . 
DA 8 HOH A 56 656 133 HOH HOH . 
DA 8 HOH A 57 657 338 HOH HOH . 
DA 8 HOH A 58 658 21 HOH HOH . 
DA 8 HOH A 59 659 726 HOH HOH . 
DA 8 HOH A 60 660 741 HOH HOH . 
DA 8 HOH A 61 661 659 HOH HOH . 
DA 8 HOH A 62 662 370 HOH HOH . 
DA 8 HOH A 63 663 382 HOH HOH . 
DA 8 HOH A 64 664 462 HOH HOH . 
DA 8 HOH A 65 665 353 HOH HOH . 
DA 8 HOH A 66 666 767 HOH HOH . 
DA 8 HOH A 67 667 296 HOH HOH . 
DA 8 HOH A 68 668 775 HOH HOH . 
DA 8 HOH A 69 669 759 HOH HOH . 
DA 8 HOH A 70 670 782 HOH HOH . 
DA 8 HOH A 71 671 364 HOH HOH . 
DA 8 HOH A 72 672 428 HOH HOH . 
DA 8 HOH A 73 673 448 HOH HOH . 
DA 8 HOH A 74 674 413 HOH HOH . 
DA 8 HOH A 75 675 156 HOH HOH . 
DA 8 HOH A 76 676 166 HOH HOH . 
DA 8 HOH A 77 677 455 HOH HOH . 
DA 8 HOH A 78 678 450 HOH HOH . 
DA 8 HOH A 79 679 776 HOH HOH . 
DA 8 HOH A 80 680 651 HOH HOH . 
DA 8 HOH A 81 681 167 HOH HOH . 
DA 8 HOH A 82 682 300 HOH HOH . 
DA 8 HOH A 83 683 423 HOH HOH . 
DA 8 HOH A 84 684 430 HOH HOH . 
DA 8 HOH A 85 685 404 HOH HOH . 
DA 8 HOH A 86 686 439 HOH HOH . 
DA 8 HOH A 87 687 308 HOH HOH . 
DA 8 HOH A 88 688 101 HOH HOH . 
DA 8 HOH A 89 689 460 HOH HOH . 
DA 8 HOH A 90 690 799 HOH HOH . 
EA 8 HOH B 1 601 173 HOH HOH . 
EA 8 HOH B 2 602 318 HOH HOH . 
EA 8 HOH B 3 603 620 HOH HOH . 
EA 8 HOH B 4 604 399 HOH HOH . 
EA 8 HOH B 5 605 458 HOH HOH . 
EA 8 HOH B 6 606 642 HOH HOH . 
EA 8 HOH B 7 607 656 HOH HOH . 
EA 8 HOH B 8 608 431 HOH HOH . 
EA 8 HOH B 9 609 325 HOH HOH . 
EA 8 HOH B 10 610 373 HOH HOH . 
EA 8 HOH B 11 611 639 HOH HOH . 
EA 8 HOH B 12 612 344 HOH HOH . 
EA 8 HOH B 13 613 319 HOH HOH . 
EA 8 HOH B 14 614 409 HOH HOH . 
EA 8 HOH B 15 615 645 HOH HOH . 
EA 8 HOH B 16 616 682 HOH HOH . 
EA 8 HOH B 17 617 386 HOH HOH . 
EA 8 HOH B 18 618 681 HOH HOH . 
EA 8 HOH B 19 619 412 HOH HOH . 
EA 8 HOH B 20 620 683 HOH HOH . 
EA 8 HOH B 21 621 678 HOH HOH . 
EA 8 HOH B 22 622 303 HOH HOH . 
EA 8 HOH B 23 623 381 HOH HOH . 
EA 8 HOH B 24 624 380 HOH HOH . 
EA 8 HOH B 25 625 666 HOH HOH . 
EA 8 HOH B 26 626 379 HOH HOH . 
EA 8 HOH B 27 627 422 HOH HOH . 
EA 8 HOH B 28 628 362 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B AN2 . . . V 4 45.621 75.778 15.797 1 80.95 ? N3B AN2 502 B 1 
HETATM 2 P PB AN2 . . . V 4 47.355 75.679 15.584 1 81.02 ? PB AN2 502 B 1 
HETATM 3 O O2B AN2 . . . V 4 47.798 74.274 15.473 1 81.14 ? O2B AN2 502 B 1 
HETATM 4 O O1B AN2 . . . V 4 47.815 76.404 14.231 1 81.97 ? O1B AN2 502 B 1 
HETATM 5 O O3A AN2 . . . V 4 48.152 76.371 16.803 1 80.74 ? O3A AN2 502 B 1 
HETATM 6 P PA AN2 . . . V 4 47.593 77.259 18.046 1 79.68 ? PA AN2 502 B 1 
HETATM 7 O O1A AN2 . . . V 4 46.12 77.596 17.881 1 79.5 ? O1A AN2 502 B 1 
HETATM 8 O O2A AN2 . . . V 4 48.055 76.551 19.297 1 80.31 ? O2A AN2 502 B 1 
HETATM 9 O O5' AN2 . . . V 4 48.507 78.574 17.869 1 78.38 ? O5' AN2 502 B 1 
HETATM 10 C C5' AN2 . . . V 4 49.918 78.424 17.878 1 78.54 ? C5' AN2 502 B 1 
HETATM 11 C C4' AN2 . . . V 4 50.55 79.748 17.498 1 79.38 ? C4' AN2 502 B 1 
HETATM 12 O O4' AN2 . . . V 4 50.105 80.71 18.47 1 80.27 ? O4' AN2 502 B 1 
HETATM 13 C C3' AN2 . . . V 4 52.071 79.698 17.591 1 79.45 ? C3' AN2 502 B 1 
HETATM 14 O O3' AN2 . . . V 4 52.618 80.453 16.491 1 79.03 ? O3' AN2 502 B 1 
HETATM 15 C C2' AN2 . . . V 4 52.363 80.404 18.912 1 80.12 ? C2' AN2 502 B 1 
HETATM 16 O O2' AN2 . . . V 4 53.643 81.04 18.953 1 80.54 ? O2' AN2 502 B 1 
HETATM 17 C C1' AN2 . . . V 4 51.216 81.397 19.051 1 80.48 ? C1' AN2 502 B 1 
HETATM 18 N N9 AN2 . . . V 4 50.946 81.83 20.449 1 81.16 ? N9 AN2 502 B 1 
HETATM 19 C C8 AN2 . . . V 4 50.575 81.045 21.476 1 81.57 ? C8 AN2 502 B 1 
HETATM 20 N N7 AN2 . . . V 4 50.412 81.762 22.611 1 81.72 ? N7 AN2 502 B 1 
HETATM 21 C C5 AN2 . . . V 4 50.64 83.046 22.315 1 81.98 ? C5 AN2 502 B 1 
HETATM 22 C C4 AN2 . . . V 4 51.005 83.083 20.894 1 81.85 ? C4 AN2 502 B 1 
HETATM 23 N N3 AN2 . . . V 4 51.273 84.284 20.323 1 82.53 ? N3 AN2 502 B 1 
HETATM 24 C C2 AN2 . . . V 4 51.272 85.411 21.055 1 82.78 ? C2 AN2 502 B 1 
HETATM 25 N N1 AN2 . . . V 4 50.94 85.467 22.366 1 82.83 ? N1 AN2 502 B 1 
HETATM 26 C C6 AN2 . . . V 4 50.65 84.337 23.059 1 82.87 ? C6 AN2 502 B 1 
HETATM 27 N N6 AN2 . . . V 4 50.403 84.379 24.395 1 83.08 ? N6 AN2 502 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#