data_7OOG
#
_model_server_result.job_id            JdrD0Vw0AGAqbndZdbGuyA 
_model_server_result.datetime_utc      '2024-11-14 20:32:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7oog 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":510}' 
#
_entry.id    7OOG 
#
_exptl.entry_id    7OOG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OOG 
_cell.length_a            79.997 
_cell.length_b            101.027 
_cell.length_c            103.184 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OOG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,AA 1 1 
B,R,S,T,U,V,W,X,Y,Z,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 R N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 364 A PRO 390 1_555 A N CSX 365 A CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 A C CSX 365 A CSX 391 1_555 A N LYS 366 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale3 B C PRO 364 B PRO 390 1_555 B N CSX 365 B CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 B C CSX 365 B CSX 391 1_555 B N LYS 366 B LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
metalc ? metalc1 E O1B AN2 . A AN2 503 1_555 Q MG MG . A MG 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
metalc ? metalc2 Q MG MG . A MG 515 1_555 AA O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc3 B OD1 ASP 13 B ASP 39 1_555 Z MG MG . B MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc4 Y O4 PO4 . B PO4 508 1_555 Z MG MG . B MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 188 n n 
C1 C2 GOL sing 189 n n 
C1 H11 GOL sing 190 n n 
C1 H12 GOL sing 191 n n 
O1 HO1 GOL sing 192 n n 
C2 O2 GOL sing 193 n n 
C2 C3 GOL sing 194 n n 
C2 H2 GOL sing 195 n n 
O2 HO2 GOL sing 196 n n 
C3 O3 GOL sing 197 n n 
C3 H31 GOL sing 198 n n 
C3 H32 GOL sing 199 n n 
O3 HO3 GOL sing 200 n n 
#
_atom_sites.entry_id                     7OOG 
_atom_sites.fract_transf_matrix[1][1]    0.0125 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009691 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 504 GOL GOL . 
D 3 PG4 A 1 502 1001 PG4 PG4 . 
E 4 AN2 A 1 503 1301 AN2 AN2 . 
F 2 GOL A 1 504 1401 GOL GOL . 
G 2 GOL A 1 505 1501 GOL GOL . 
H 2 GOL A 1 506 1601 GOL GOL . 
I 2 GOL A 1 507 1701 GOL GOL . 
J 2 GOL A 1 508 1801 GOL GOL . 
K 2 GOL A 1 509 1901 GOL GOL . 
L 2 GOL A 1 510 2001 GOL GOL . 
M 5 HEW A 1 511 2101 HEW LIG . 
N 6 PO4 A 1 512 1 PO4 PO4 . 
O 7 CL A 1 513 1 CL CL . 
P 7 CL A 1 514 2 CL CL . 
Q 8 MG A 1 515 1 MG MG . 
R 2 GOL B 1 501 503 GOL GOL . 
S 4 AN2 B 1 502 1101 AN2 AN2 . 
T 2 GOL B 1 503 1201 GOL GOL . 
U 2 GOL B 1 504 1401 GOL GOL . 
V 2 GOL B 1 505 1501 GOL GOL . 
W 2 GOL B 1 506 1701 GOL GOL . 
X 5 HEW B 1 511 2101 HEW LIG . 
Y 6 PO4 B 1 508 2 PO4 PO4 . 
Z 8 MG B 1 509 2 MG MG . 
AA 9 HOH A 1 601 76 HOH HOH . 
AA 9 HOH A 2 602 290 HOH HOH . 
AA 9 HOH A 3 603 601 HOH HOH . 
AA 9 HOH A 4 604 145 HOH HOH . 
AA 9 HOH A 5 605 272 HOH HOH . 
AA 9 HOH A 6 606 608 HOH HOH . 
AA 9 HOH A 7 607 357 HOH HOH . 
AA 9 HOH A 8 608 121 HOH HOH . 
AA 9 HOH A 9 609 341 HOH HOH . 
AA 9 HOH A 10 610 353 HOH HOH . 
AA 9 HOH A 11 611 653 HOH HOH . 
AA 9 HOH A 12 612 633 HOH HOH . 
AA 9 HOH A 13 613 355 HOH HOH . 
AA 9 HOH A 14 614 776 HOH HOH . 
AA 9 HOH A 15 615 680 HOH HOH . 
AA 9 HOH A 16 616 624 HOH HOH . 
AA 9 HOH A 17 617 108 HOH HOH . 
AA 9 HOH A 18 618 636 HOH HOH . 
AA 9 HOH A 19 619 642 HOH HOH . 
AA 9 HOH A 20 620 675 HOH HOH . 
AA 9 HOH A 21 621 663 HOH HOH . 
AA 9 HOH A 22 622 701 HOH HOH . 
AA 9 HOH A 23 623 699 HOH HOH . 
AA 9 HOH A 24 624 342 HOH HOH . 
AA 9 HOH A 25 625 337 HOH HOH . 
AA 9 HOH A 26 626 656 HOH HOH . 
AA 9 HOH A 27 627 707 HOH HOH . 
AA 9 HOH A 28 628 728 HOH HOH . 
AA 9 HOH A 29 629 788 HOH HOH . 
AA 9 HOH A 30 630 720 HOH HOH . 
AA 9 HOH A 31 631 692 HOH HOH . 
AA 9 HOH A 32 632 674 HOH HOH . 
AA 9 HOH A 33 633 687 HOH HOH . 
AA 9 HOH A 34 634 328 HOH HOH . 
AA 9 HOH A 35 635 695 HOH HOH . 
AA 9 HOH A 36 636 668 HOH HOH . 
AA 9 HOH A 37 637 135 HOH HOH . 
AA 9 HOH A 38 638 658 HOH HOH . 
AA 9 HOH A 39 639 706 HOH HOH . 
AA 9 HOH A 40 640 712 HOH HOH . 
AA 9 HOH A 41 641 351 HOH HOH . 
AA 9 HOH A 42 642 715 HOH HOH . 
AA 9 HOH A 43 643 206 HOH HOH . 
AA 9 HOH A 44 644 708 HOH HOH . 
AA 9 HOH A 45 645 218 HOH HOH . 
AA 9 HOH A 46 646 264 HOH HOH . 
AA 9 HOH A 47 647 689 HOH HOH . 
AA 9 HOH A 48 648 734 HOH HOH . 
AA 9 HOH A 49 649 686 HOH HOH . 
AA 9 HOH A 50 650 726 HOH HOH . 
AA 9 HOH A 51 651 289 HOH HOH . 
AA 9 HOH A 52 652 717 HOH HOH . 
AA 9 HOH A 53 653 265 HOH HOH . 
AA 9 HOH A 54 654 286 HOH HOH . 
AA 9 HOH A 55 655 605 HOH HOH . 
AA 9 HOH A 56 656 313 HOH HOH . 
AA 9 HOH A 57 657 344 HOH HOH . 
AA 9 HOH A 58 658 748 HOH HOH . 
AA 9 HOH A 59 659 133 HOH HOH . 
AA 9 HOH A 60 660 13 HOH HOH . 
AA 9 HOH A 61 661 759 HOH HOH . 
AA 9 HOH A 62 662 343 HOH HOH . 
AA 9 HOH A 63 663 233 HOH HOH . 
AA 9 HOH A 64 664 349 HOH HOH . 
AA 9 HOH A 65 665 321 HOH HOH . 
AA 9 HOH A 66 666 760 HOH HOH . 
AA 9 HOH A 67 667 319 HOH HOH . 
AA 9 HOH A 68 668 767 HOH HOH . 
AA 9 HOH A 69 669 114 HOH HOH . 
AA 9 HOH A 70 670 227 HOH HOH . 
AA 9 HOH A 71 671 334 HOH HOH . 
AA 9 HOH A 72 672 207 HOH HOH . 
AA 9 HOH A 73 673 768 HOH HOH . 
AA 9 HOH A 74 674 729 HOH HOH . 
AA 9 HOH A 75 675 273 HOH HOH . 
AA 9 HOH A 76 676 269 HOH HOH . 
AA 9 HOH A 77 677 255 HOH HOH . 
AA 9 HOH A 78 678 308 HOH HOH . 
AA 9 HOH A 79 679 331 HOH HOH . 
AA 9 HOH A 80 680 782 HOH HOH . 
AA 9 HOH A 81 681 775 HOH HOH . 
AA 9 HOH A 82 682 97 HOH HOH . 
AA 9 HOH A 83 683 311 HOH HOH . 
AA 9 HOH A 84 684 340 HOH HOH . 
AA 9 HOH A 85 685 651 HOH HOH . 
AA 9 HOH A 86 686 51 HOH HOH . 
AA 9 HOH A 87 687 166 HOH HOH . 
AA 9 HOH A 88 688 659 HOH HOH . 
AA 9 HOH A 89 689 324 HOH HOH . 
AA 9 HOH A 90 690 352 HOH HOH . 
AA 9 HOH A 91 691 257 HOH HOH . 
AA 9 HOH A 92 692 167 HOH HOH . 
AA 9 HOH A 93 693 326 HOH HOH . 
AA 9 HOH A 94 694 346 HOH HOH . 
AA 9 HOH A 95 695 151 HOH HOH . 
BA 9 HOH B 1 601 173 HOH HOH . 
BA 9 HOH B 2 602 356 HOH HOH . 
BA 9 HOH B 3 603 604 HOH HOH . 
BA 9 HOH B 4 604 168 HOH HOH . 
BA 9 HOH B 5 605 620 HOH HOH . 
BA 9 HOH B 6 606 159 HOH HOH . 
BA 9 HOH B 7 607 339 HOH HOH . 
BA 9 HOH B 8 608 643 HOH HOH . 
BA 9 HOH B 9 609 180 HOH HOH . 
BA 9 HOH B 10 610 335 HOH HOH . 
BA 9 HOH B 11 611 333 HOH HOH . 
BA 9 HOH B 12 612 642 HOH HOH . 
BA 9 HOH B 13 613 656 HOH HOH . 
BA 9 HOH B 14 614 639 HOH HOH . 
BA 9 HOH B 15 615 174 HOH HOH . 
BA 9 HOH B 16 616 181 HOH HOH . 
BA 9 HOH B 17 617 702 HOH HOH . 
BA 9 HOH B 18 618 336 HOH HOH . 
BA 9 HOH B 19 619 354 HOH HOH . 
BA 9 HOH B 20 620 645 HOH HOH . 
BA 9 HOH B 21 621 682 HOH HOH . 
BA 9 HOH B 22 622 330 HOH HOH . 
BA 9 HOH B 23 623 189 HOH HOH . 
BA 9 HOH B 24 624 332 HOH HOH . 
BA 9 HOH B 25 625 703 HOH HOH . 
BA 9 HOH B 26 626 345 HOH HOH . 
BA 9 HOH B 27 627 7 HOH HOH . 
BA 9 HOH B 28 628 310 HOH HOH . 
BA 9 HOH B 29 629 678 HOH HOH . 
BA 9 HOH B 30 630 329 HOH HOH . 
BA 9 HOH B 31 631 683 HOH HOH . 
BA 9 HOH B 32 632 350 HOH HOH . 
BA 9 HOH B 33 633 803 HOH HOH . 
BA 9 HOH B 34 634 348 HOH HOH . 
BA 9 HOH B 35 635 681 HOH HOH . 
BA 9 HOH B 36 636 74 HOH HOH . 
BA 9 HOH B 37 637 309 HOH HOH . 
BA 9 HOH B 38 638 623 HOH HOH . 
BA 9 HOH B 39 639 666 HOH HOH . 
BA 9 HOH B 40 640 347 HOH HOH . 
BA 9 HOH B 41 641 325 HOH HOH . 
BA 9 HOH B 42 642 660 HOH HOH . 
BA 9 HOH B 43 643 315 HOH HOH . 
BA 9 HOH B 44 644 307 HOH HOH . 
BA 9 HOH B 45 645 338 HOH HOH . 
BA 9 HOH B 46 646 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 2 31.239 101.673 46.048 1 92.45 ? C1 GOL 510 A 1 
HETATM 2 O O1 GOL . . . L 2 30.22 100.793 45.602 1 92.3 ? O1 GOL 510 A 1 
HETATM 3 C C2 GOL . . . L 2 31.824 102.46 44.896 1 92.63 ? C2 GOL 510 A 1 
HETATM 4 O O2 GOL . . . L 2 32.506 103.624 45.403 1 92.63 ? O2 GOL 510 A 1 
HETATM 5 C C3 GOL . . . L 2 32.767 101.618 44.063 1 92.36 ? C3 GOL 510 A 1 
HETATM 6 O O3 GOL . . . L 2 32.071 100.876 43.061 1 92.04 ? O3 GOL 510 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#