data_7OOW # _model_server_result.job_id ujq0tqS5KICtNcAni0xXBg _model_server_result.datetime_utc '2024-11-12 20:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7OOW # _exptl.entry_id 7OOW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OOW _cell.length_a 98.614 _cell.length_b 98.614 _cell.length_c 80.729 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OOW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B N1 6J9 1 B 6J9 1 1_555 B C AZ1 2 B AZ1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 B C9 AZ1 2 B AZ1 2 1_555 B N DAR 3 B DAR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 B C DAR 3 B DAR 3 1_555 B N DAR 4 B DAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 B C DAR 4 B DAR 4 1_555 B N DAR 5 B DAR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 B C DAR 5 B DAR 5 1_555 B N DAR 6 B DAR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C DAR 6 B DAR 6 1_555 B N DAR 7 B DAR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 B C DAR 7 B DAR 7 1_555 B N DAR 8 B DAR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C DAR 8 B DAR 8 1_555 B N NH2 9 B NH2 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A OG SER 190 A SER 189 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 C MG MG . A MG 401 1_555 H O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 C MG MG . A MG 401 1_555 H O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 C MG MG . A MG 401 1_555 H O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc5 C MG MG . A MG 401 1_555 H O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 C MG MG . A MG 401 1_555 H O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 167 n n C1 C2 EDO sing 168 n n C1 H11 EDO sing 169 n n C1 H12 EDO sing 170 n n O1 HO1 EDO sing 171 n n C2 O2 EDO sing 172 n n C2 H21 EDO sing 173 n n C2 H22 EDO sing 174 n n O2 HO2 EDO sing 175 n n # _atom_sites.entry_id 7OOW _atom_sites.fract_transf_matrix[1][1] 0.010141 _atom_sites.fract_transf_matrix[1][2] 0.005855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 401 1 MG MG . D 4 EDO A 1 402 5 EDO EDO . E 4 EDO A 1 403 6 EDO EDO . F 4 EDO A 1 404 7 EDO EDO . G 4 EDO A 1 405 8 EDO EDO . H 5 HOH A 1 501 227 HOH HOH . H 5 HOH A 2 502 234 HOH HOH . H 5 HOH A 3 503 170 HOH HOH . H 5 HOH A 4 504 226 HOH HOH . H 5 HOH A 5 505 229 HOH HOH . H 5 HOH A 6 506 243 HOH HOH . H 5 HOH A 7 507 235 HOH HOH . H 5 HOH A 8 508 122 HOH HOH . H 5 HOH A 9 509 249 HOH HOH . H 5 HOH A 10 510 250 HOH HOH . H 5 HOH A 11 511 212 HOH HOH . H 5 HOH A 12 512 155 HOH HOH . H 5 HOH A 13 513 39 HOH HOH . H 5 HOH A 14 514 204 HOH HOH . H 5 HOH A 15 515 65 HOH HOH . H 5 HOH A 16 516 209 HOH HOH . H 5 HOH A 17 517 108 HOH HOH . H 5 HOH A 18 518 63 HOH HOH . H 5 HOH A 19 519 70 HOH HOH . H 5 HOH A 20 520 74 HOH HOH . H 5 HOH A 21 521 205 HOH HOH . H 5 HOH A 22 522 89 HOH HOH . H 5 HOH A 23 523 20 HOH HOH . H 5 HOH A 24 524 207 HOH HOH . H 5 HOH A 25 525 230 HOH HOH . H 5 HOH A 26 526 103 HOH HOH . H 5 HOH A 27 527 150 HOH HOH . H 5 HOH A 28 528 128 HOH HOH . H 5 HOH A 29 529 223 HOH HOH . H 5 HOH A 30 530 121 HOH HOH . H 5 HOH A 31 531 225 HOH HOH . H 5 HOH A 32 532 48 HOH HOH . H 5 HOH A 33 533 99 HOH HOH . H 5 HOH A 34 534 110 HOH HOH . H 5 HOH A 35 535 127 HOH HOH . H 5 HOH A 36 536 52 HOH HOH . H 5 HOH A 37 537 138 HOH HOH . H 5 HOH A 38 538 51 HOH HOH . H 5 HOH A 39 539 216 HOH HOH . H 5 HOH A 40 540 124 HOH HOH . H 5 HOH A 41 541 21 HOH HOH . H 5 HOH A 42 542 24 HOH HOH . H 5 HOH A 43 543 102 HOH HOH . H 5 HOH A 44 544 141 HOH HOH . H 5 HOH A 45 545 130 HOH HOH . H 5 HOH A 46 546 92 HOH HOH . H 5 HOH A 47 547 213 HOH HOH . H 5 HOH A 48 548 4 HOH HOH . H 5 HOH A 49 549 100 HOH HOH . H 5 HOH A 50 550 1 HOH HOH . H 5 HOH A 51 551 41 HOH HOH . H 5 HOH A 52 552 98 HOH HOH . H 5 HOH A 53 553 176 HOH HOH . H 5 HOH A 54 554 13 HOH HOH . H 5 HOH A 55 555 73 HOH HOH . H 5 HOH A 56 556 193 HOH HOH . H 5 HOH A 57 557 14 HOH HOH . H 5 HOH A 58 558 135 HOH HOH . H 5 HOH A 59 559 80 HOH HOH . H 5 HOH A 60 560 91 HOH HOH . H 5 HOH A 61 561 7 HOH HOH . H 5 HOH A 62 562 46 HOH HOH . H 5 HOH A 63 563 94 HOH HOH . H 5 HOH A 64 564 18 HOH HOH . H 5 HOH A 65 565 16 HOH HOH . H 5 HOH A 66 566 34 HOH HOH . H 5 HOH A 67 567 148 HOH HOH . H 5 HOH A 68 568 218 HOH HOH . H 5 HOH A 69 569 219 HOH HOH . H 5 HOH A 70 570 79 HOH HOH . H 5 HOH A 71 571 50 HOH HOH . H 5 HOH A 72 572 246 HOH HOH . H 5 HOH A 73 573 45 HOH HOH . H 5 HOH A 74 574 33 HOH HOH . H 5 HOH A 75 575 64 HOH HOH . H 5 HOH A 76 576 232 HOH HOH . H 5 HOH A 77 577 58 HOH HOH . H 5 HOH A 78 578 32 HOH HOH . H 5 HOH A 79 579 142 HOH HOH . H 5 HOH A 80 580 3 HOH HOH . H 5 HOH A 81 581 179 HOH HOH . H 5 HOH A 82 582 53 HOH HOH . H 5 HOH A 83 583 72 HOH HOH . H 5 HOH A 84 584 169 HOH HOH . H 5 HOH A 85 585 143 HOH HOH . H 5 HOH A 86 586 125 HOH HOH . H 5 HOH A 87 587 29 HOH HOH . H 5 HOH A 88 588 206 HOH HOH . H 5 HOH A 89 589 244 HOH HOH . H 5 HOH A 90 590 75 HOH HOH . H 5 HOH A 91 591 247 HOH HOH . H 5 HOH A 92 592 35 HOH HOH . H 5 HOH A 93 593 172 HOH HOH . H 5 HOH A 94 594 54 HOH HOH . H 5 HOH A 95 595 104 HOH HOH . H 5 HOH A 96 596 47 HOH HOH . H 5 HOH A 97 597 239 HOH HOH . H 5 HOH A 98 598 57 HOH HOH . H 5 HOH A 99 599 140 HOH HOH . H 5 HOH A 100 600 11 HOH HOH . H 5 HOH A 101 601 84 HOH HOH . H 5 HOH A 102 602 77 HOH HOH . H 5 HOH A 103 603 93 HOH HOH . H 5 HOH A 104 604 238 HOH HOH . H 5 HOH A 105 605 123 HOH HOH . H 5 HOH A 106 606 22 HOH HOH . H 5 HOH A 107 607 162 HOH HOH . H 5 HOH A 108 608 136 HOH HOH . H 5 HOH A 109 609 37 HOH HOH . H 5 HOH A 110 610 111 HOH HOH . H 5 HOH A 111 611 56 HOH HOH . H 5 HOH A 112 612 26 HOH HOH . H 5 HOH A 113 613 210 HOH HOH . H 5 HOH A 114 614 109 HOH HOH . H 5 HOH A 115 615 30 HOH HOH . H 5 HOH A 116 616 240 HOH HOH . H 5 HOH A 117 617 28 HOH HOH . H 5 HOH A 118 618 25 HOH HOH . H 5 HOH A 119 619 62 HOH HOH . H 5 HOH A 120 620 86 HOH HOH . H 5 HOH A 121 621 187 HOH HOH . H 5 HOH A 122 622 15 HOH HOH . H 5 HOH A 123 623 81 HOH HOH . H 5 HOH A 124 624 214 HOH HOH . H 5 HOH A 125 625 236 HOH HOH . H 5 HOH A 126 626 112 HOH HOH . H 5 HOH A 127 627 95 HOH HOH . H 5 HOH A 128 628 19 HOH HOH . H 5 HOH A 129 629 10 HOH HOH . H 5 HOH A 130 630 36 HOH HOH . H 5 HOH A 131 631 85 HOH HOH . H 5 HOH A 132 632 161 HOH HOH . H 5 HOH A 133 633 67 HOH HOH . H 5 HOH A 134 634 2 HOH HOH . H 5 HOH A 135 635 90 HOH HOH . H 5 HOH A 136 636 151 HOH HOH . H 5 HOH A 137 637 117 HOH HOH . H 5 HOH A 138 638 9 HOH HOH . H 5 HOH A 139 639 217 HOH HOH . H 5 HOH A 140 640 208 HOH HOH . H 5 HOH A 141 641 242 HOH HOH . H 5 HOH A 142 642 68 HOH HOH . H 5 HOH A 143 643 8 HOH HOH . H 5 HOH A 144 644 27 HOH HOH . H 5 HOH A 145 645 23 HOH HOH . H 5 HOH A 146 646 183 HOH HOH . H 5 HOH A 147 647 69 HOH HOH . H 5 HOH A 148 648 49 HOH HOH . H 5 HOH A 149 649 12 HOH HOH . H 5 HOH A 150 650 43 HOH HOH . H 5 HOH A 151 651 248 HOH HOH . H 5 HOH A 152 652 44 HOH HOH . H 5 HOH A 153 653 171 HOH HOH . H 5 HOH A 154 654 177 HOH HOH . H 5 HOH A 155 655 76 HOH HOH . H 5 HOH A 156 656 224 HOH HOH . H 5 HOH A 157 657 237 HOH HOH . H 5 HOH A 158 658 31 HOH HOH . H 5 HOH A 159 659 201 HOH HOH . H 5 HOH A 160 660 211 HOH HOH . H 5 HOH A 161 661 196 HOH HOH . H 5 HOH A 162 662 82 HOH HOH . H 5 HOH A 163 663 40 HOH HOH . H 5 HOH A 164 664 5 HOH HOH . H 5 HOH A 165 665 78 HOH HOH . H 5 HOH A 166 666 203 HOH HOH . H 5 HOH A 167 667 194 HOH HOH . H 5 HOH A 168 668 38 HOH HOH . H 5 HOH A 169 669 192 HOH HOH . H 5 HOH A 170 670 105 HOH HOH . H 5 HOH A 171 671 42 HOH HOH . H 5 HOH A 172 672 60 HOH HOH . H 5 HOH A 173 673 221 HOH HOH . H 5 HOH A 174 674 101 HOH HOH . H 5 HOH A 175 675 118 HOH HOH . H 5 HOH A 176 676 145 HOH HOH . H 5 HOH A 177 677 189 HOH HOH . H 5 HOH A 178 678 87 HOH HOH . H 5 HOH A 179 679 233 HOH HOH . H 5 HOH A 180 680 61 HOH HOH . H 5 HOH A 181 681 245 HOH HOH . H 5 HOH A 182 682 220 HOH HOH . H 5 HOH A 183 683 222 HOH HOH . H 5 HOH A 184 684 156 HOH HOH . H 5 HOH A 185 685 165 HOH HOH . H 5 HOH A 186 686 132 HOH HOH . H 5 HOH A 187 687 107 HOH HOH . H 5 HOH A 188 688 195 HOH HOH . H 5 HOH A 189 689 113 HOH HOH . H 5 HOH A 190 690 114 HOH HOH . H 5 HOH A 191 691 55 HOH HOH . H 5 HOH A 192 692 215 HOH HOH . H 5 HOH A 193 693 96 HOH HOH . H 5 HOH A 194 694 131 HOH HOH . H 5 HOH A 195 695 71 HOH HOH . H 5 HOH A 196 696 167 HOH HOH . H 5 HOH A 197 697 153 HOH HOH . H 5 HOH A 198 698 202 HOH HOH . H 5 HOH A 199 699 197 HOH HOH . H 5 HOH A 200 700 241 HOH HOH . H 5 HOH A 201 701 83 HOH HOH . H 5 HOH A 202 702 200 HOH HOH . H 5 HOH A 203 703 144 HOH HOH . H 5 HOH A 204 704 66 HOH HOH . H 5 HOH A 205 705 88 HOH HOH . H 5 HOH A 206 706 97 HOH HOH . H 5 HOH A 207 707 126 HOH HOH . I 5 HOH B 1 101 119 HOH HOH . I 5 HOH B 2 102 160 HOH HOH . I 5 HOH B 3 103 106 HOH HOH . I 5 HOH B 4 104 231 HOH HOH . I 5 HOH B 5 105 59 HOH HOH . I 5 HOH B 6 106 191 HOH HOH . I 5 HOH B 7 107 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 60.703 29.312 2.264 1 43.63 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . D 4 60.799 29.375 3.683 1 29.52 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . D 4 61.458 30.385 1.576 1 44.44 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . D 4 62.733 30.596 2.176 1 48.08 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #