data_7OP1
#
_model_server_result.job_id            zKf-bN-m3MsUyRMAeUle_A 
_model_server_result.datetime_utc      '2024-12-01 00:46:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7op1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1403}' 
#
_entry.id    7OP1 
#
_exptl.entry_id    7OP1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OP1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 680 A ASP 680 1_555 B MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc2 A OD1 ASP 1095 A ASP 1095 1_555 B MG MG . A MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 292 n n 
N1 HN11 SPM sing 293 n n 
N1 HN12 SPM sing 294 n n 
C2 C3 SPM sing 295 n n 
C2 H21 SPM sing 296 n n 
C2 H22 SPM sing 297 n n 
C3 C4 SPM sing 298 n n 
C3 H31 SPM sing 299 n n 
C3 H32 SPM sing 300 n n 
C4 N5 SPM sing 301 n n 
C4 H41 SPM sing 302 n n 
C4 H42 SPM sing 303 n n 
N5 C6 SPM sing 304 n n 
N5 HN5 SPM sing 305 n n 
C6 C7 SPM sing 306 n n 
C6 H61 SPM sing 307 n n 
C6 H62 SPM sing 308 n n 
C7 C8 SPM sing 309 n n 
C7 H71 SPM sing 310 n n 
C7 H72 SPM sing 311 n n 
C8 C9 SPM sing 312 n n 
C8 H81 SPM sing 313 n n 
C8 H82 SPM sing 314 n n 
C9 N10 SPM sing 315 n n 
C9 H91 SPM sing 316 n n 
C9 H92 SPM sing 317 n n 
N10 C11 SPM sing 318 n n 
N10 HN0 SPM sing 319 n n 
C11 C12 SPM sing 320 n n 
C11 H111 SPM sing 321 n n 
C11 H112 SPM sing 322 n n 
C12 C13 SPM sing 323 n n 
C12 H121 SPM sing 324 n n 
C12 H122 SPM sing 325 n n 
C13 N14 SPM sing 326 n n 
C13 H131 SPM sing 327 n n 
C13 H132 SPM sing 328 n n 
N14 HN41 SPM sing 329 n n 
N14 HN42 SPM sing 330 n n 
#
_atom_sites.entry_id                     7OP1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1401 1401 MG MG . 
C 3 ALF A 1 1402 1402 ALF ALF . 
D 4 SPM A 1 1403 1 SPM SPM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPM . . . D 4 153.639 137.647 99.735 1 30.34 ? N1 SPM 1403 A 1 
HETATM 2 C C2 SPM . . . D 4 152.296 137.306 100.157 1 30.34 ? C2 SPM 1403 A 1 
HETATM 3 C C3 SPM . . . D 4 151.942 138.1 101.409 1 30.34 ? C3 SPM 1403 A 1 
HETATM 4 C C4 SPM . . . D 4 150.505 137.83 101.833 1 30.34 ? C4 SPM 1403 A 1 
HETATM 5 N N5 SPM . . . D 4 150.06 138.734 102.873 1 30.34 ? N5 SPM 1403 A 1 
HETATM 6 C C6 SPM . . . D 4 148.787 138.495 103.521 1 30.34 ? C6 SPM 1403 A 1 
HETATM 7 C C7 SPM . . . D 4 148.955 137.812 104.869 1 30.34 ? C7 SPM 1403 A 1 
HETATM 8 C C8 SPM . . . D 4 148.531 138.734 106.003 1 30.34 ? C8 SPM 1403 A 1 
HETATM 9 C C9 SPM . . . D 4 147.032 138.636 106.246 1 30.34 ? C9 SPM 1403 A 1 
HETATM 10 N N10 SPM . . . D 4 146.738 138.309 107.626 1 30.34 ? N10 SPM 1403 A 1 
HETATM 11 C C11 SPM . . . D 4 146.272 139.336 108.533 1 30.34 ? C11 SPM 1403 A 1 
HETATM 12 C C12 SPM . . . D 4 145.027 138.898 109.288 1 30.34 ? C12 SPM 1403 A 1 
HETATM 13 C C13 SPM . . . D 4 144.554 139.984 110.243 1 30.34 ? C13 SPM 1403 A 1 
HETATM 14 N N14 SPM . . . D 4 145.629 140.345 111.143 1 30.34 ? N14 SPM 1403 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    82 
_model_server_stats.query_time_ms           952 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#