data_7OPM # _model_server_result.job_id 1PrY4dVP-pmwNZxWvdEVlw _model_server_result.datetime_utc '2024-11-25 02:11:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7opm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7OPM # _exptl.entry_id 7OPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 311.338 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-(hydroxymethyl)-1H-pyrazolo[4,3-c]pyridin-6-yl]-3-[(1S)-1-phenylethyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.35 _cell.angle_gamma 90 _cell.entry_id 7OPM _cell.length_a 210.094 _cell.length_b 41.149 _cell.length_c 51.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 165 A CYS 161 1_555 B CB ABU 4 B ABU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? covale ? covale2 A C LEU 188 A LEU 184 1_555 A N TPO 189 A TPO 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C TPO 189 A TPO 185 1_555 A N GLU 190 A GLU 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C GLU 190 A GLU 186 1_555 A N PTR 191 A PTR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C PTR 191 A PTR 187 1_555 A N VAL 192 A VAL 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C LEU 3 B LEU 5 1_555 B N ABU 4 B ABU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale7 B C ABU 4 B ABU 6 1_555 B N LEU 5 B LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? # _chem_comp.formula 'C16 H17 N5 O2' _chem_comp.formula_weight 311.338 _chem_comp.id 08G _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-(hydroxymethyl)-1H-pyrazolo[4,3-c]pyridin-6-yl]-3-[(1S)-1-phenylethyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 08G doub 1 n y C22 C23 08G sing 2 n y C21 C20 08G sing 3 n y C23 C18 08G doub 4 n y C20 C19 08G doub 5 n y C18 C19 08G sing 6 n y C18 C02 08G sing 7 n n N03 C02 08G sing 8 n n N03 C04 08G sing 9 n n C02 C01 08G sing 10 n n C04 O05 08G doub 11 n n C04 N06 08G sing 12 n n N06 C07 08G sing 13 n n C07 N17 08G sing 14 n y C07 C08 08G doub 15 n y N17 C14 08G doub 16 n y C08 C09 08G sing 17 n y O16 C15 08G sing 18 n n C14 C15 08G sing 19 n n C14 C13 08G sing 20 n y C09 C13 08G doub 21 n y C09 N10 08G sing 22 n y C13 C12 08G sing 23 n y N10 N11 08G sing 24 n y C12 N11 08G doub 25 n y C12 H1 08G sing 26 n n C15 H2 08G sing 27 n n C15 H3 08G sing 28 n n C19 H4 08G sing 29 n n C20 H5 08G sing 30 n n C21 H6 08G sing 31 n n C22 H7 08G sing 32 n n C01 H8 08G sing 33 n n C01 H9 08G sing 34 n n C01 H10 08G sing 35 n n C02 H11 08G sing 36 n n C08 H12 08G sing 37 n n C23 H13 08G sing 38 n n N03 H14 08G sing 39 n n N06 H15 08G sing 40 n n N10 H16 08G sing 41 n n O16 H17 08G sing 42 n n # _atom_sites.entry_id 7OPM _atom_sites.fract_transf_matrix[1][1] 0.00476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 08G A 1 401 403 08G INH . E 5 GOL A 1 402 101 GOL GOL . F 5 GOL A 1 403 201 GOL GOL . G 5 GOL A 1 404 301 GOL GOL . H 6 HOH A 1 501 19 HOH HOH . H 6 HOH A 2 502 15 HOH HOH . H 6 HOH A 3 503 28 HOH HOH . H 6 HOH A 4 504 20 HOH HOH . H 6 HOH A 5 505 10 HOH HOH . H 6 HOH A 6 506 13 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 12 HOH HOH . H 6 HOH A 9 509 33 HOH HOH . H 6 HOH A 10 510 38 HOH HOH . H 6 HOH A 11 511 3 HOH HOH . H 6 HOH A 12 512 9 HOH HOH . H 6 HOH A 13 513 6 HOH HOH . H 6 HOH A 14 514 29 HOH HOH . H 6 HOH A 15 515 34 HOH HOH . H 6 HOH A 16 516 2 HOH HOH . H 6 HOH A 17 517 39 HOH HOH . H 6 HOH A 18 518 4 HOH HOH . H 6 HOH A 19 519 35 HOH HOH . H 6 HOH A 20 520 1 HOH HOH . H 6 HOH A 21 521 27 HOH HOH . H 6 HOH A 22 522 16 HOH HOH . H 6 HOH A 23 523 25 HOH HOH . H 6 HOH A 24 524 30 HOH HOH . H 6 HOH A 25 525 22 HOH HOH . H 6 HOH A 26 526 31 HOH HOH . H 6 HOH A 27 527 36 HOH HOH . H 6 HOH A 28 528 8 HOH HOH . H 6 HOH A 29 529 11 HOH HOH . H 6 HOH A 30 530 18 HOH HOH . H 6 HOH A 31 531 37 HOH HOH . H 6 HOH A 32 532 14 HOH HOH . H 6 HOH A 33 533 5 HOH HOH . H 6 HOH A 34 534 26 HOH HOH . H 6 HOH A 35 535 24 HOH HOH . H 6 HOH A 36 536 23 HOH HOH . I 6 HOH B 1 101 7 HOH HOH . I 6 HOH B 2 102 21 HOH HOH . J 6 HOH C 1 101 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 08G . . . D 4 40.26 -8.142 24.831 1 48.1 ? C12 08G 401 A 1 HETATM 2 C C13 08G . . . D 4 39.773 -7.944 23.513 1 50.94 ? C13 08G 401 A 1 HETATM 3 C C14 08G . . . D 4 39.076 -8.768 22.612 1 52.1 ? C14 08G 401 A 1 HETATM 4 C C15 08G . . . D 4 38.678 -10.188 22.953 1 51.93 ? C15 08G 401 A 1 HETATM 5 C C19 08G . . . D 4 38.622 -9.852 16.75 1 61.19 ? C19 08G 401 A 1 HETATM 6 C C20 08G . . . D 4 39.068 -10.64 15.705 1 61.08 ? C20 08G 401 A 1 HETATM 7 C C21 08G . . . D 4 38.625 -10.386 14.419 1 63.33 ? C21 08G 401 A 1 HETATM 8 C C22 08G . . . D 4 37.748 -9.343 14.181 1 61.97 ? C22 08G 401 A 1 HETATM 9 C C01 08G . . . D 4 35.817 -8.169 18.055 1 49.31 ? C01 08G 401 A 1 HETATM 10 C C02 08G . . . D 4 37.288 -7.941 17.696 1 55.47 ? C02 08G 401 A 1 HETATM 11 C C04 08G . . . D 4 38.35 -5.961 18.668 1 59.03 ? C04 08G 401 A 1 HETATM 12 C C07 08G . . . D 4 39.033 -7.109 21.026 1 54.01 ? C07 08G 401 A 1 HETATM 13 C C08 08G . . . D 4 39.712 -6.199 21.829 1 53.37 ? C08 08G 401 A 1 HETATM 14 C C09 08G . . . D 4 40.096 -6.665 23.129 1 54.12 ? C09 08G 401 A 1 HETATM 15 C C18 08G . . . D 4 37.753 -8.799 16.518 1 60.04 ? C18 08G 401 A 1 HETATM 16 C C23 08G . . . D 4 37.308 -8.55 15.23 1 60.49 ? C23 08G 401 A 1 HETATM 17 N N03 08G . . . D 4 37.653 -6.532 17.531 1 58.18 ? N03 08G 401 A 1 HETATM 18 N N06 08G . . . D 4 38.504 -6.964 19.693 1 58.55 ? N06 08G 401 A 1 HETATM 19 N N10 08G . . . D 4 40.748 -6.112 24.181 1 50.96 ? N10 08G 401 A 1 HETATM 20 N N11 08G . . . D 4 40.842 -7.017 25.197 1 50.46 ? N11 08G 401 A 1 HETATM 21 N N17 08G . . . D 4 38.743 -8.322 21.437 1 50.92 ? N17 08G 401 A 1 HETATM 22 O O05 08G . . . D 4 38.732 -4.836 18.722 1 64.74 ? O05 08G 401 A 1 HETATM 23 O O16 08G . . . D 4 37.751 -10.589 21.987 1 49.28 ? O16 08G 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #