data_7OPM # _model_server_result.job_id EzhyqzVws1dpkxnv5Rndyw _model_server_result.datetime_utc '2024-11-25 01:40:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7opm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":404}' # _entry.id 7OPM # _exptl.entry_id 7OPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.35 _cell.angle_gamma 90 _cell.entry_id 7OPM _cell.length_a 210.094 _cell.length_b 41.149 _cell.length_c 51.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 165 A CYS 161 1_555 B CB ABU 4 B ABU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? covale ? covale2 A C LEU 188 A LEU 184 1_555 A N TPO 189 A TPO 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C TPO 189 A TPO 185 1_555 A N GLU 190 A GLU 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C GLU 190 A GLU 186 1_555 A N PTR 191 A PTR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C PTR 191 A PTR 187 1_555 A N VAL 192 A VAL 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C LEU 3 B LEU 5 1_555 B N ABU 4 B ABU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale7 B C ABU 4 B ABU 6 1_555 B N LEU 5 B LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 186 n n C1 C2 GOL sing 187 n n C1 H11 GOL sing 188 n n C1 H12 GOL sing 189 n n O1 HO1 GOL sing 190 n n C2 O2 GOL sing 191 n n C2 C3 GOL sing 192 n n C2 H2 GOL sing 193 n n O2 HO2 GOL sing 194 n n C3 O3 GOL sing 195 n n C3 H31 GOL sing 196 n n C3 H32 GOL sing 197 n n O3 HO3 GOL sing 198 n n # _atom_sites.entry_id 7OPM _atom_sites.fract_transf_matrix[1][1] 0.00476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 08G A 1 401 403 08G INH . E 5 GOL A 1 402 101 GOL GOL . F 5 GOL A 1 403 201 GOL GOL . G 5 GOL A 1 404 301 GOL GOL . H 6 HOH A 1 501 19 HOH HOH . H 6 HOH A 2 502 15 HOH HOH . H 6 HOH A 3 503 28 HOH HOH . H 6 HOH A 4 504 20 HOH HOH . H 6 HOH A 5 505 10 HOH HOH . H 6 HOH A 6 506 13 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 12 HOH HOH . H 6 HOH A 9 509 33 HOH HOH . H 6 HOH A 10 510 38 HOH HOH . H 6 HOH A 11 511 3 HOH HOH . H 6 HOH A 12 512 9 HOH HOH . H 6 HOH A 13 513 6 HOH HOH . H 6 HOH A 14 514 29 HOH HOH . H 6 HOH A 15 515 34 HOH HOH . H 6 HOH A 16 516 2 HOH HOH . H 6 HOH A 17 517 39 HOH HOH . H 6 HOH A 18 518 4 HOH HOH . H 6 HOH A 19 519 35 HOH HOH . H 6 HOH A 20 520 1 HOH HOH . H 6 HOH A 21 521 27 HOH HOH . H 6 HOH A 22 522 16 HOH HOH . H 6 HOH A 23 523 25 HOH HOH . H 6 HOH A 24 524 30 HOH HOH . H 6 HOH A 25 525 22 HOH HOH . H 6 HOH A 26 526 31 HOH HOH . H 6 HOH A 27 527 36 HOH HOH . H 6 HOH A 28 528 8 HOH HOH . H 6 HOH A 29 529 11 HOH HOH . H 6 HOH A 30 530 18 HOH HOH . H 6 HOH A 31 531 37 HOH HOH . H 6 HOH A 32 532 14 HOH HOH . H 6 HOH A 33 533 5 HOH HOH . H 6 HOH A 34 534 26 HOH HOH . H 6 HOH A 35 535 24 HOH HOH . H 6 HOH A 36 536 23 HOH HOH . I 6 HOH B 1 101 7 HOH HOH . I 6 HOH B 2 102 21 HOH HOH . J 6 HOH C 1 101 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 56.973 -12.75 31.19 1 84.44 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . G 5 58.049 -12.286 30.43 1 86.28 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . G 5 55.701 -12.15 30.553 1 82.2 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . G 5 55.812 -12.015 29.196 1 89.24 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . G 5 54.524 -13.057 30.992 1 75.95 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . G 5 53.35 -12.36 30.71 1 70.26 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #