data_7OPN
#
_model_server_result.job_id            V847FQoardDLTcOUSU5YqQ 
_model_server_result.datetime_utc      '2024-12-23 06:52:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7opn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3008}' 
#
_entry.id    7OPN 
#
_exptl.entry_id    7OPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OPN 
_cell.length_a            149.528 
_cell.length_b            149.528 
_cell.length_c            269.488 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
? 8 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 49 A CYS 49 1_555 D FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc2 A SG CYS 52 A CYS 52 1_555 D FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc3 A SG CYS 74 A CYS 74 1_555 D FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc4 A SG CYS 114 A CYS 114 1_555 C FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc5 A SG CYS 117 A CYS 117 1_555 C FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc6 A SG CYS 149 A CYS 149 1_555 C FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc7 A SG CYS 151 A CYS 151 1_555 C FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc8 E S1' MTE . A MTE 3003 1_555 F MO MOS . A MOS 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc9 E S2' MTE . A MTE 3003 1_555 F MO MOS . A MOS 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc10 B SG CYS 49 B CYS 49 1_555 O FE1 FES . B FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc11 B SG CYS 52 B CYS 52 1_555 O FE2 FES . B FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc12 B SG CYS 74 B CYS 74 1_555 O FE2 FES . B FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc13 B SG CYS 114 B CYS 114 1_555 N FE2 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc14 B SG CYS 117 B CYS 117 1_555 N FE1 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc15 B SG CYS 149 B CYS 149 1_555 N FE1 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc16 B SG CYS 151 B CYS 151 1_555 N FE2 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc17 P S1' MTE . B MTE 3003 1_555 Q MO MOS . B MOS 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc18 P S2' MTE . B MTE 3003 1_555 Q MO MOS . B MOS 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 233 n n 
C1 C2 GOL sing 234 n n 
C1 H11 GOL sing 235 n n 
C1 H12 GOL sing 236 n n 
O1 HO1 GOL sing 237 n n 
C2 O2 GOL sing 238 n n 
C2 C3 GOL sing 239 n n 
C2 H2 GOL sing 240 n n 
O2 HO2 GOL sing 241 n n 
C3 O3 GOL sing 242 n n 
C3 H31 GOL sing 243 n n 
C3 H32 GOL sing 244 n n 
O3 HO3 GOL sing 245 n n 
#
_atom_sites.entry_id                     7OPN 
_atom_sites.fract_transf_matrix[1][1]    0.006688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006688 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FES A 1 3001 3001 FES FES . 
D 2 FES A 1 3002 3002 FES FES . 
E 3 MTE A 1 3003 3003 MTE MTE . 
F 4 MOS A 1 3004 3004 MOS MOS . 
G 5 FAD A 1 3005 3006 FAD FAD . 
H 6 MLI A 1 3006 2 MLI MLI . 
I 7 PG6 A 1 3007 7 PG6 PG6 . 
J 8 GOL A 1 3008 9 GOL GOL . 
K 8 GOL A 1 3009 1401 GOL GOL . 
L 9 RAL A 1 3010 6541 RAL RAL . 
M 9 RAL A 1 3011 6544 RAL RAL . 
N 2 FES B 1 3001 3001 FES FES . 
O 2 FES B 1 3002 3002 FES FES . 
P 3 MTE B 1 3003 3003 MTE MTE . 
Q 4 MOS B 1 3004 3005 MOS MOS . 
R 5 FAD B 1 3005 3006 FAD FAD . 
S 8 GOL B 1 3006 1 GOL GOL . 
T 6 MLI B 1 3007 6 MLI MLI . 
U 10 DMS B 1 3008 8 DMS DMS . 
V 9 RAL B 1 3009 6542 RAL RAL . 
W 9 RAL B 1 3010 6545 RAL RAL . 
X 11 HOH A 1 3101 17 HOH HOH . 
X 11 HOH A 2 3102 215 HOH HOH . 
X 11 HOH A 3 3103 255 HOH HOH . 
X 11 HOH A 4 3104 213 HOH HOH . 
X 11 HOH A 5 3105 22 HOH HOH . 
X 11 HOH A 6 3106 83 HOH HOH . 
X 11 HOH A 7 3107 127 HOH HOH . 
X 11 HOH A 8 3108 66 HOH HOH . 
X 11 HOH A 9 3109 32 HOH HOH . 
X 11 HOH A 10 3110 107 HOH HOH . 
X 11 HOH A 11 3111 46 HOH HOH . 
X 11 HOH A 12 3112 82 HOH HOH . 
X 11 HOH A 13 3113 126 HOH HOH . 
X 11 HOH A 14 3114 134 HOH HOH . 
X 11 HOH A 15 3115 94 HOH HOH . 
X 11 HOH A 16 3116 47 HOH HOH . 
X 11 HOH A 17 3117 208 HOH HOH . 
X 11 HOH A 18 3118 168 HOH HOH . 
X 11 HOH A 19 3119 89 HOH HOH . 
X 11 HOH A 20 3120 1 HOH HOH . 
X 11 HOH A 21 3121 111 HOH HOH . 
X 11 HOH A 22 3122 209 HOH HOH . 
X 11 HOH A 23 3123 69 HOH HOH . 
X 11 HOH A 24 3124 198 HOH HOH . 
X 11 HOH A 25 3125 31 HOH HOH . 
X 11 HOH A 26 3126 187 HOH HOH . 
X 11 HOH A 27 3127 141 HOH HOH . 
X 11 HOH A 28 3128 149 HOH HOH . 
X 11 HOH A 29 3129 55 HOH HOH . 
X 11 HOH A 30 3130 133 HOH HOH . 
X 11 HOH A 31 3131 206 HOH HOH . 
X 11 HOH A 32 3132 18 HOH HOH . 
X 11 HOH A 33 3133 103 HOH HOH . 
X 11 HOH A 34 3134 5 HOH HOH . 
X 11 HOH A 35 3135 138 HOH HOH . 
X 11 HOH A 36 3136 105 HOH HOH . 
X 11 HOH A 37 3137 35 HOH HOH . 
X 11 HOH A 38 3138 170 HOH HOH . 
X 11 HOH A 39 3139 53 HOH HOH . 
X 11 HOH A 40 3140 253 HOH HOH . 
X 11 HOH A 41 3141 33 HOH HOH . 
X 11 HOH A 42 3142 145 HOH HOH . 
X 11 HOH A 43 3143 256 HOH HOH . 
X 11 HOH A 44 3144 86 HOH HOH . 
X 11 HOH A 45 3145 146 HOH HOH . 
X 11 HOH A 46 3146 210 HOH HOH . 
X 11 HOH A 47 3147 196 HOH HOH . 
X 11 HOH A 48 3148 252 HOH HOH . 
X 11 HOH A 49 3149 160 HOH HOH . 
X 11 HOH A 50 3150 204 HOH HOH . 
X 11 HOH A 51 3151 50 HOH HOH . 
X 11 HOH A 52 3152 57 HOH HOH . 
X 11 HOH A 53 3153 106 HOH HOH . 
X 11 HOH A 54 3154 39 HOH HOH . 
X 11 HOH A 55 3155 218 HOH HOH . 
X 11 HOH A 56 3156 144 HOH HOH . 
X 11 HOH A 57 3157 79 HOH HOH . 
X 11 HOH A 58 3158 36 HOH HOH . 
X 11 HOH A 59 3159 8 HOH HOH . 
X 11 HOH A 60 3160 16 HOH HOH . 
X 11 HOH A 61 3161 207 HOH HOH . 
X 11 HOH A 62 3162 167 HOH HOH . 
X 11 HOH A 63 3163 174 HOH HOH . 
X 11 HOH A 64 3164 156 HOH HOH . 
X 11 HOH A 65 3165 220 HOH HOH . 
X 11 HOH A 66 3166 137 HOH HOH . 
X 11 HOH A 67 3167 112 HOH HOH . 
X 11 HOH A 68 3168 10 HOH HOH . 
X 11 HOH A 69 3169 61 HOH HOH . 
X 11 HOH A 70 3170 172 HOH HOH . 
X 11 HOH A 71 3171 129 HOH HOH . 
X 11 HOH A 72 3172 250 HOH HOH . 
X 11 HOH A 73 3173 44 HOH HOH . 
X 11 HOH A 74 3174 249 HOH HOH . 
X 11 HOH A 75 3175 154 HOH HOH . 
X 11 HOH A 76 3176 254 HOH HOH . 
X 11 HOH A 77 3177 190 HOH HOH . 
X 11 HOH A 78 3178 219 HOH HOH . 
X 11 HOH A 79 3179 166 HOH HOH . 
X 11 HOH A 80 3180 211 HOH HOH . 
X 11 HOH A 81 3181 140 HOH HOH . 
X 11 HOH A 82 3182 217 HOH HOH . 
X 11 HOH A 83 3183 195 HOH HOH . 
X 11 HOH A 84 3184 3 HOH HOH . 
X 11 HOH A 85 3185 91 HOH HOH . 
X 11 HOH A 86 3186 214 HOH HOH . 
X 11 HOH A 87 3187 222 HOH HOH . 
X 11 HOH A 88 3188 68 HOH HOH . 
X 11 HOH A 89 3189 72 HOH HOH . 
X 11 HOH A 90 3190 71 HOH HOH . 
X 11 HOH A 91 3191 98 HOH HOH . 
Y 11 HOH B 1 3101 248 HOH HOH . 
Y 11 HOH B 2 3102 25 HOH HOH . 
Y 11 HOH B 3 3103 120 HOH HOH . 
Y 11 HOH B 4 3104 88 HOH HOH . 
Y 11 HOH B 5 3105 258 HOH HOH . 
Y 11 HOH B 6 3106 234 HOH HOH . 
Y 11 HOH B 7 3107 80 HOH HOH . 
Y 11 HOH B 8 3108 12 HOH HOH . 
Y 11 HOH B 9 3109 45 HOH HOH . 
Y 11 HOH B 10 3110 125 HOH HOH . 
Y 11 HOH B 11 3111 13 HOH HOH . 
Y 11 HOH B 12 3112 230 HOH HOH . 
Y 11 HOH B 13 3113 95 HOH HOH . 
Y 11 HOH B 14 3114 26 HOH HOH . 
Y 11 HOH B 15 3115 122 HOH HOH . 
Y 11 HOH B 16 3116 2 HOH HOH . 
Y 11 HOH B 17 3117 233 HOH HOH . 
Y 11 HOH B 18 3118 62 HOH HOH . 
Y 11 HOH B 19 3119 65 HOH HOH . 
Y 11 HOH B 20 3120 54 HOH HOH . 
Y 11 HOH B 21 3121 188 HOH HOH . 
Y 11 HOH B 22 3122 14 HOH HOH . 
Y 11 HOH B 23 3123 90 HOH HOH . 
Y 11 HOH B 24 3124 245 HOH HOH . 
Y 11 HOH B 25 3125 199 HOH HOH . 
Y 11 HOH B 26 3126 7 HOH HOH . 
Y 11 HOH B 27 3127 113 HOH HOH . 
Y 11 HOH B 28 3128 236 HOH HOH . 
Y 11 HOH B 29 3129 87 HOH HOH . 
Y 11 HOH B 30 3130 28 HOH HOH . 
Y 11 HOH B 31 3131 9 HOH HOH . 
Y 11 HOH B 32 3132 38 HOH HOH . 
Y 11 HOH B 33 3133 15 HOH HOH . 
Y 11 HOH B 34 3134 56 HOH HOH . 
Y 11 HOH B 35 3135 194 HOH HOH . 
Y 11 HOH B 36 3136 261 HOH HOH . 
Y 11 HOH B 37 3137 24 HOH HOH . 
Y 11 HOH B 38 3138 257 HOH HOH . 
Y 11 HOH B 39 3139 225 HOH HOH . 
Y 11 HOH B 40 3140 163 HOH HOH . 
Y 11 HOH B 41 3141 63 HOH HOH . 
Y 11 HOH B 42 3142 239 HOH HOH . 
Y 11 HOH B 43 3143 4 HOH HOH . 
Y 11 HOH B 44 3144 104 HOH HOH . 
Y 11 HOH B 45 3145 161 HOH HOH . 
Y 11 HOH B 46 3146 74 HOH HOH . 
Y 11 HOH B 47 3147 238 HOH HOH . 
Y 11 HOH B 48 3148 223 HOH HOH . 
Y 11 HOH B 49 3149 73 HOH HOH . 
Y 11 HOH B 50 3150 231 HOH HOH . 
Y 11 HOH B 51 3151 260 HOH HOH . 
Y 11 HOH B 52 3152 92 HOH HOH . 
Y 11 HOH B 53 3153 75 HOH HOH . 
Y 11 HOH B 54 3154 60 HOH HOH . 
Y 11 HOH B 55 3155 262 HOH HOH . 
Y 11 HOH B 56 3156 180 HOH HOH . 
Y 11 HOH B 57 3157 259 HOH HOH . 
Y 11 HOH B 58 3158 101 HOH HOH . 
Y 11 HOH B 59 3159 49 HOH HOH . 
Y 11 HOH B 60 3160 232 HOH HOH . 
Y 11 HOH B 61 3161 114 HOH HOH . 
Y 11 HOH B 62 3162 169 HOH HOH . 
Y 11 HOH B 63 3163 251 HOH HOH . 
Y 11 HOH B 64 3164 102 HOH HOH . 
Y 11 HOH B 65 3165 100 HOH HOH . 
Y 11 HOH B 66 3166 241 HOH HOH . 
Y 11 HOH B 67 3167 118 HOH HOH . 
Y 11 HOH B 68 3168 81 HOH HOH . 
Y 11 HOH B 69 3169 153 HOH HOH . 
Y 11 HOH B 70 3170 235 HOH HOH . 
Y 11 HOH B 71 3171 237 HOH HOH . 
Y 11 HOH B 72 3172 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 8 -60.217 -43.399 -44.637 1 62.59 ? C1 GOL 3008 A 1 
HETATM 2 O O1 GOL . . . J 8 -60.052 -43.655 -43.278 1 62.12 ? O1 GOL 3008 A 1 
HETATM 3 C C2 GOL . . . J 8 -58.839 -42.953 -45.182 1 66.77 ? C2 GOL 3008 A 1 
HETATM 4 O O2 GOL . . . J 8 -58.077 -42.314 -44.209 1 61.61 ? O2 GOL 3008 A 1 
HETATM 5 C C3 GOL . . . J 8 -58.173 -44.253 -45.71 1 61.44 ? C3 GOL 3008 A 1 
HETATM 6 O O3 GOL . . . J 8 -59.114 -44.893 -46.52 1 59.73 ? O3 GOL 3008 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#