data_7OPO # _model_server_result.job_id Wxv77_iDt-FPjga3JUXYMw _model_server_result.datetime_utc '2024-11-09 02:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7opo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 7OPO # _exptl.entry_id 7OPO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.423 _cell.angle_gamma 90 _cell.entry_id 7OPO _cell.length_a 170.29 _cell.length_b 88.621 _cell.length_c 160.346 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,S 1 1 C,D,N,T,U 2 1 E,F,O,V 3 1 G,H,P,W 4 1 I,J,Q,X 5 1 K,L,R,Y,Z 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7OPO _atom_sites.fract_transf_matrix[1][1] 0.005872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000557 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ANP A 1 401 480 ANP ANP . N 3 ANP C 1 401 480 ANP ANP . O 3 ANP E 1 401 480 ANP ANP . P 3 ANP G 1 401 480 ANP ANP . Q 3 ANP I 1 401 480 ANP ANP . R 3 ANP K 1 401 480 ANP ANP . S 4 HOH A 1 501 40 HOH HOH . S 4 HOH A 2 502 23 HOH HOH . S 4 HOH A 3 503 4 HOH HOH . S 4 HOH A 4 504 11 HOH HOH . S 4 HOH A 5 505 9 HOH HOH . S 4 HOH A 6 506 28 HOH HOH . T 4 HOH C 1 501 14 HOH HOH . T 4 HOH C 2 502 42 HOH HOH . T 4 HOH C 3 503 45 HOH HOH . T 4 HOH C 4 504 47 HOH HOH . T 4 HOH C 5 505 15 HOH HOH . T 4 HOH C 6 506 1 HOH HOH . T 4 HOH C 7 507 20 HOH HOH . T 4 HOH C 8 508 8 HOH HOH . T 4 HOH C 9 509 37 HOH HOH . T 4 HOH C 10 510 43 HOH HOH . U 4 HOH D 1 101 41 HOH HOH . V 4 HOH E 1 501 35 HOH HOH . V 4 HOH E 2 502 6 HOH HOH . V 4 HOH E 3 503 36 HOH HOH . V 4 HOH E 4 504 18 HOH HOH . V 4 HOH E 5 505 3 HOH HOH . V 4 HOH E 6 506 26 HOH HOH . V 4 HOH E 7 507 39 HOH HOH . V 4 HOH E 8 508 31 HOH HOH . V 4 HOH E 9 509 2 HOH HOH . V 4 HOH E 10 510 32 HOH HOH . V 4 HOH E 11 511 34 HOH HOH . V 4 HOH E 12 512 10 HOH HOH . V 4 HOH E 13 513 44 HOH HOH . W 4 HOH G 1 501 38 HOH HOH . W 4 HOH G 2 502 46 HOH HOH . W 4 HOH G 3 503 13 HOH HOH . W 4 HOH G 4 504 30 HOH HOH . W 4 HOH G 5 505 7 HOH HOH . W 4 HOH G 6 506 25 HOH HOH . W 4 HOH G 7 507 27 HOH HOH . X 4 HOH I 1 501 29 HOH HOH . X 4 HOH I 2 502 22 HOH HOH . X 4 HOH I 3 503 16 HOH HOH . X 4 HOH I 4 504 17 HOH HOH . X 4 HOH I 5 505 21 HOH HOH . X 4 HOH I 6 506 19 HOH HOH . Y 4 HOH K 1 501 33 HOH HOH . Y 4 HOH K 2 502 5 HOH HOH . Y 4 HOH K 3 503 12 HOH HOH . Z 4 HOH L 1 101 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . M 3 -25.86 11.61 33.773 1 73.66 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . M 3 -25.921 10.822 32.502 1 75.21 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . M 3 -27.059 12.633 33.838 1 71.38 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . M 3 -26.02 10.608 34.979 1 76.47 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . M 3 -24.186 13.911 33.317 1 59.26 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . M 3 -22.74 14.196 33.06 1 59.7 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . M 3 -24.971 14.034 31.981 1 58.65 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . M 3 -24.332 12.343 33.912 1 66.61 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . M 3 -26.186 15.491 34.514 1 57.43 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . M 3 -26.684 16.18 33.3 1 57.56 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . M 3 -27.042 14.345 35.059 1 61.82 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . M 3 -24.685 14.973 34.36 1 59.82 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . M 3 -26 16.582 35.617 1 56.05 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . M 3 -25.635 16.126 36.925 1 53.94 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . M 3 -26.138 17.132 37.919 1 54.55 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . M 3 -25.456 18.388 37.708 1 53.97 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . M 3 -27.62 17.47 37.799 1 55 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . M 3 -28.434 16.543 38.511 1 56.77 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . M 3 -27.668 18.871 38.405 1 54.03 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . M 3 -27.654 18.835 39.827 1 53.42 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . M 3 -26.362 19.466 37.872 1 53.74 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . M 3 -26.506 20.15 36.593 1 48.03 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . M 3 -26.356 19.616 35.34 1 48.99 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . M 3 -26.553 20.472 34.367 1 47.76 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . M 3 -26.859 21.653 35.026 1 47.27 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . M 3 -27.176 22.944 34.561 1 43.81 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . M 3 -27.239 23.272 33.269 1 45.45 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . M 3 -27.429 23.899 35.486 1 48.09 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . M 3 -27.37 23.573 36.781 1 46.94 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . M 3 -27.082 22.393 37.336 1 46.5 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . M 3 -26.836 21.469 36.398 1 47.64 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #