data_7OPQ # _model_server_result.job_id GtgOYGzIEE_aMPxY5AqdYA _model_server_result.datetime_utc '2024-10-19 22:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7opq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":209}' # _entry.id 7OPQ # _exptl.entry_id 7OPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OPQ _cell.length_a 61.71 _cell.length_b 76.816 _cell.length_c 117.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 225 A CYS 187 1_555 C C04 06D . A 06D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? covale ? covale2 B SG CYS 225 B CYS 187 1_555 L C04 06D . B 06D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc1 A OG1 THR 60 A THR 22 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 A OG1 THR 78 A THR 40 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 D O3G GNP . A GNP 202 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 D O2B GNP . A GNP 202 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc5 E MG MG . A MG 203 1_555 Q O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 E MG MG . A MG 203 1_555 Q O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc7 B OG1 THR 60 B THR 22 1_555 N MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc8 B OG1 THR 78 B THR 40 1_555 N MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc9 M O3G GNP . B GNP 202 1_555 N MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc10 M O2B GNP . B GNP 202 1_555 N MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc11 N MG MG . B MG 203 1_555 R O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc12 N MG MG . B MG 203 1_555 R O HOH . B HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 217 n n C1 C2 GOL sing 218 n n C1 H11 GOL sing 219 n n C1 H12 GOL sing 220 n n O1 HO1 GOL sing 221 n n C2 O2 GOL sing 222 n n C2 C3 GOL sing 223 n n C2 H2 GOL sing 224 n n O2 HO2 GOL sing 225 n n C3 O3 GOL sing 226 n n C3 H31 GOL sing 227 n n C3 H32 GOL sing 228 n n O3 HO3 GOL sing 229 n n # _atom_sites.entry_id 7OPQ _atom_sites.fract_transf_matrix[1][1] 0.016205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 06D A 1 201 188 06D A01 . D 3 GNP A 1 202 194 GNP GNP . E 4 MG A 1 203 195 MG MG . F 5 GOL A 1 204 201 GOL GOL . G 5 GOL A 1 205 301 GOL GOL . H 5 GOL A 1 206 401 GOL GOL . I 5 GOL A 1 207 501 GOL GOL . J 5 GOL A 1 208 701 GOL GOL . K 5 GOL A 1 209 901 GOL GOL . L 2 06D B 1 201 188 06D A01 . M 3 GNP B 1 202 194 GNP GNP . N 4 MG B 1 203 195 MG MG . O 5 GOL B 1 204 201 GOL GOL . P 5 GOL B 1 205 301 GOL GOL . Q 6 HOH A 1 301 2 HOH HOH . Q 6 HOH A 2 302 19 HOH HOH . Q 6 HOH A 3 303 200 HOH HOH . Q 6 HOH A 4 304 14 HOH HOH . Q 6 HOH A 5 305 214 HOH HOH . Q 6 HOH A 6 306 15 HOH HOH . Q 6 HOH A 7 307 153 HOH HOH . Q 6 HOH A 8 308 6 HOH HOH . Q 6 HOH A 9 309 201 HOH HOH . Q 6 HOH A 10 310 67 HOH HOH . Q 6 HOH A 11 311 37 HOH HOH . Q 6 HOH A 12 312 180 HOH HOH . Q 6 HOH A 13 313 13 HOH HOH . Q 6 HOH A 14 314 91 HOH HOH . Q 6 HOH A 15 315 49 HOH HOH . Q 6 HOH A 16 316 64 HOH HOH . Q 6 HOH A 17 317 88 HOH HOH . Q 6 HOH A 18 318 4 HOH HOH . Q 6 HOH A 19 319 48 HOH HOH . Q 6 HOH A 20 320 7 HOH HOH . Q 6 HOH A 21 321 143 HOH HOH . Q 6 HOH A 22 322 61 HOH HOH . Q 6 HOH A 23 323 146 HOH HOH . Q 6 HOH A 24 324 3 HOH HOH . Q 6 HOH A 25 325 105 HOH HOH . Q 6 HOH A 26 326 96 HOH HOH . Q 6 HOH A 27 327 87 HOH HOH . Q 6 HOH A 28 328 109 HOH HOH . Q 6 HOH A 29 329 111 HOH HOH . Q 6 HOH A 30 330 5 HOH HOH . Q 6 HOH A 31 331 158 HOH HOH . Q 6 HOH A 32 332 215 HOH HOH . Q 6 HOH A 33 333 17 HOH HOH . Q 6 HOH A 34 334 199 HOH HOH . Q 6 HOH A 35 335 160 HOH HOH . Q 6 HOH A 36 336 82 HOH HOH . Q 6 HOH A 37 337 142 HOH HOH . Q 6 HOH A 38 338 212 HOH HOH . Q 6 HOH A 39 339 126 HOH HOH . Q 6 HOH A 40 340 100 HOH HOH . Q 6 HOH A 41 341 47 HOH HOH . Q 6 HOH A 42 342 102 HOH HOH . Q 6 HOH A 43 343 178 HOH HOH . Q 6 HOH A 44 344 104 HOH HOH . Q 6 HOH A 45 345 204 HOH HOH . Q 6 HOH A 46 346 24 HOH HOH . Q 6 HOH A 47 347 175 HOH HOH . Q 6 HOH A 48 348 85 HOH HOH . Q 6 HOH A 49 349 106 HOH HOH . Q 6 HOH A 50 350 84 HOH HOH . Q 6 HOH A 51 351 150 HOH HOH . Q 6 HOH A 52 352 79 HOH HOH . Q 6 HOH A 53 353 148 HOH HOH . Q 6 HOH A 54 354 190 HOH HOH . Q 6 HOH A 55 355 181 HOH HOH . Q 6 HOH A 56 356 131 HOH HOH . Q 6 HOH A 57 357 16 HOH HOH . Q 6 HOH A 58 358 203 HOH HOH . Q 6 HOH A 59 359 95 HOH HOH . Q 6 HOH A 60 360 81 HOH HOH . Q 6 HOH A 61 361 231 HOH HOH . Q 6 HOH A 62 362 171 HOH HOH . Q 6 HOH A 63 363 202 HOH HOH . Q 6 HOH A 64 364 83 HOH HOH . Q 6 HOH A 65 365 176 HOH HOH . Q 6 HOH A 66 366 173 HOH HOH . Q 6 HOH A 67 367 138 HOH HOH . Q 6 HOH A 68 368 110 HOH HOH . Q 6 HOH A 69 369 232 HOH HOH . Q 6 HOH A 70 370 9 HOH HOH . Q 6 HOH A 71 371 179 HOH HOH . Q 6 HOH A 72 372 10 HOH HOH . Q 6 HOH A 73 373 68 HOH HOH . Q 6 HOH A 74 374 140 HOH HOH . Q 6 HOH A 75 375 103 HOH HOH . Q 6 HOH A 76 376 182 HOH HOH . Q 6 HOH A 77 377 139 HOH HOH . Q 6 HOH A 78 378 107 HOH HOH . Q 6 HOH A 79 379 197 HOH HOH . Q 6 HOH A 80 380 220 HOH HOH . Q 6 HOH A 81 381 86 HOH HOH . Q 6 HOH A 82 382 98 HOH HOH . Q 6 HOH A 83 383 108 HOH HOH . Q 6 HOH A 84 384 23 HOH HOH . Q 6 HOH A 85 385 177 HOH HOH . Q 6 HOH A 86 386 69 HOH HOH . Q 6 HOH A 87 387 189 HOH HOH . Q 6 HOH A 88 388 196 HOH HOH . Q 6 HOH A 89 389 147 HOH HOH . Q 6 HOH A 90 390 229 HOH HOH . Q 6 HOH A 91 391 101 HOH HOH . Q 6 HOH A 92 392 219 HOH HOH . Q 6 HOH A 93 393 145 HOH HOH . Q 6 HOH A 94 394 97 HOH HOH . Q 6 HOH A 95 395 151 HOH HOH . Q 6 HOH A 96 396 80 HOH HOH . Q 6 HOH A 97 397 99 HOH HOH . Q 6 HOH A 98 398 94 HOH HOH . Q 6 HOH A 99 399 159 HOH HOH . R 6 HOH B 1 301 216 HOH HOH . R 6 HOH B 2 302 50 HOH HOH . R 6 HOH B 3 303 77 HOH HOH . R 6 HOH B 4 304 226 HOH HOH . R 6 HOH B 5 305 115 HOH HOH . R 6 HOH B 6 306 129 HOH HOH . R 6 HOH B 7 307 59 HOH HOH . R 6 HOH B 8 308 130 HOH HOH . R 6 HOH B 9 309 31 HOH HOH . R 6 HOH B 10 310 52 HOH HOH . R 6 HOH B 11 311 206 HOH HOH . R 6 HOH B 12 312 34 HOH HOH . R 6 HOH B 13 313 113 HOH HOH . R 6 HOH B 14 314 224 HOH HOH . R 6 HOH B 15 315 30 HOH HOH . R 6 HOH B 16 316 119 HOH HOH . R 6 HOH B 17 317 60 HOH HOH . R 6 HOH B 18 318 42 HOH HOH . R 6 HOH B 19 319 55 HOH HOH . R 6 HOH B 20 320 135 HOH HOH . R 6 HOH B 21 321 168 HOH HOH . R 6 HOH B 22 322 166 HOH HOH . R 6 HOH B 23 323 116 HOH HOH . R 6 HOH B 24 324 58 HOH HOH . R 6 HOH B 25 325 163 HOH HOH . R 6 HOH B 26 326 74 HOH HOH . R 6 HOH B 27 327 213 HOH HOH . R 6 HOH B 28 328 29 HOH HOH . R 6 HOH B 29 329 27 HOH HOH . R 6 HOH B 30 330 73 HOH HOH . R 6 HOH B 31 331 54 HOH HOH . R 6 HOH B 32 332 227 HOH HOH . R 6 HOH B 33 333 25 HOH HOH . R 6 HOH B 34 334 117 HOH HOH . R 6 HOH B 35 335 32 HOH HOH . R 6 HOH B 36 336 35 HOH HOH . R 6 HOH B 37 337 161 HOH HOH . R 6 HOH B 38 338 186 HOH HOH . R 6 HOH B 39 339 162 HOH HOH . R 6 HOH B 40 340 26 HOH HOH . R 6 HOH B 41 341 33 HOH HOH . R 6 HOH B 42 342 51 HOH HOH . R 6 HOH B 43 343 223 HOH HOH . R 6 HOH B 44 344 222 HOH HOH . R 6 HOH B 45 345 198 HOH HOH . R 6 HOH B 46 346 122 HOH HOH . R 6 HOH B 47 347 120 HOH HOH . R 6 HOH B 48 348 36 HOH HOH . R 6 HOH B 49 349 28 HOH HOH . R 6 HOH B 50 350 114 HOH HOH . R 6 HOH B 51 351 184 HOH HOH . R 6 HOH B 52 352 228 HOH HOH . R 6 HOH B 53 353 124 HOH HOH . R 6 HOH B 54 354 155 HOH HOH . R 6 HOH B 55 355 133 HOH HOH . R 6 HOH B 56 356 193 HOH HOH . R 6 HOH B 57 357 167 HOH HOH . R 6 HOH B 58 358 183 HOH HOH . R 6 HOH B 59 359 125 HOH HOH . R 6 HOH B 60 360 221 HOH HOH . R 6 HOH B 61 361 132 HOH HOH . R 6 HOH B 62 362 217 HOH HOH . R 6 HOH B 63 363 218 HOH HOH . R 6 HOH B 64 364 211 HOH HOH . R 6 HOH B 65 365 144 HOH HOH . R 6 HOH B 66 366 188 HOH HOH . R 6 HOH B 67 367 225 HOH HOH . R 6 HOH B 68 368 128 HOH HOH . R 6 HOH B 69 369 156 HOH HOH . R 6 HOH B 70 370 210 HOH HOH . R 6 HOH B 71 371 192 HOH HOH . R 6 HOH B 72 372 194 HOH HOH . R 6 HOH B 73 373 208 HOH HOH . R 6 HOH B 74 374 185 HOH HOH . R 6 HOH B 75 375 53 HOH HOH . R 6 HOH B 76 376 191 HOH HOH . R 6 HOH B 77 377 230 HOH HOH . R 6 HOH B 78 378 157 HOH HOH . R 6 HOH B 79 379 169 HOH HOH . R 6 HOH B 80 380 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 -8.502 -11.053 8.331 1 65.96 ? C1 GOL 209 A 1 HETATM 2 O O1 GOL . . . K 5 -8.355 -12.377 8.805 1 66.28 ? O1 GOL 209 A 1 HETATM 3 C C2 GOL . . . K 5 -7.302 -10.221 8.875 1 63.26 ? C2 GOL 209 A 1 HETATM 4 O O2 GOL . . . K 5 -7.532 -9.795 10.184 1 66.17 ? O2 GOL 209 A 1 HETATM 5 C C3 GOL . . . K 5 -7.094 -9.025 7.863 1 54.56 ? C3 GOL 209 A 1 HETATM 6 O O3 GOL . . . K 5 -8.25 -8.936 7.053 1 66.26 ? O3 GOL 209 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #