data_7OQ1 # _model_server_result.job_id qnt3MurHiLzKucAsW4OEow _model_server_result.datetime_utc '2025-09-07 13:26:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7OQ1 # _exptl.entry_id 7OQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OQ1 _cell.length_a 81.214 _cell.length_b 87.277 _cell.length_c 48.98 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -24.49 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 46 A THR 63 1_555 H K K . A K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc2 A O THR 46 A THR 63 1_555 H K K . A K 206 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc3 A O THR 46 A THR 63 1_555 I K K . A K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc4 A OG1 THR 46 A THR 63 1_555 I K K . A K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc5 A O THR 46 A THR 63 1_555 I K K . A K 207 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc6 A OG1 THR 46 A THR 63 1_555 I K K . A K 207 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc7 A O VAL 47 A VAL 64 1_555 H K K . A K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc8 A O VAL 47 A VAL 64 1_555 H K K . A K 206 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc9 H K K . A K 206 1_555 B O THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc10 H K K . A K 206 3_554 B O THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc11 H K K . A K 206 1_555 B O VAL 47 B VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc12 H K K . A K 206 3_554 B O VAL 47 B VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc13 I K K . A K 207 1_555 B O THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc14 I K K . A K 207 1_555 B OG1 THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc15 I K K . A K 207 3_554 B O THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc16 I K K . A K 207 3_554 B OG1 THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc17 CA O HOH . A HOH 310 1_555 T K K . B K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc18 CA O HOH . A HOH 310 3_554 T K K . B K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc19 B OE2 GLU 50 B GLU 67 1_555 AA NA NA . B NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc20 B OE2 GLU 50 B GLU 67 1_555 AA NA NA . B NA 210 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc21 B OE1 GLU 50 B GLU 67 1_555 BA NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc22 B OE2 GLU 50 B GLU 67 1_555 BA NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc23 B OE1 GLU 50 B GLU 67 1_555 BA NA NA . B NA 211 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc24 B OE2 GLU 50 B GLU 67 1_555 BA NA NA . B NA 211 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc25 T K K . B K 203 1_555 DA O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc26 T K K . B K 203 1_555 DA O HOH . B HOH 308 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc27 T K K . B K 203 1_555 DA O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc28 T K K . B K 203 1_555 DA O HOH . B HOH 314 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc29 AA NA NA . B NA 210 1_555 DA O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc30 AA NA NA . B NA 210 1_555 DA O HOH . B HOH 308 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 230 n n C1 H11 MPD sing 231 n n C1 H12 MPD sing 232 n n C1 H13 MPD sing 233 n n C2 O2 MPD sing 234 n n C2 CM MPD sing 235 n n C2 C3 MPD sing 236 n n O2 HO2 MPD sing 237 n n CM HM1 MPD sing 238 n n CM HM2 MPD sing 239 n n CM HM3 MPD sing 240 n n C3 C4 MPD sing 241 n n C3 H31 MPD sing 242 n n C3 H32 MPD sing 243 n n C4 O4 MPD sing 244 n n C4 C5 MPD sing 245 n n C4 H4 MPD sing 246 n n O4 HO4 MPD sing 247 n n C5 H51 MPD sing 248 n n C5 H52 MPD sing 249 n n C5 H53 MPD sing 250 n n # _atom_sites.entry_id 7OQ1 _atom_sites.fract_transf_matrix[1][1] 0.012313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 201 3 MPD MPD . D 2 MPD A 1 202 5 MPD MPD . E 2 MPD A 1 203 6 MPD MPD . F 2 MPD A 1 204 7 MPD MPD . G 2 MPD A 1 205 8 MPD MPD . H 3 K A 1 206 1 K K . I 3 K A 1 207 2 K K . J 4 ACT A 1 208 1 ACT ACT . K 4 ACT A 1 209 5 ACT ACT . L 4 ACT A 1 210 7 ACT ACT . M 4 ACT A 1 211 9 ACT ACT . N 4 ACT A 1 212 10 ACT ACT . O 4 ACT A 1 213 11 ACT ACT . P 5 CL A 1 214 1 CL CL . Q 6 MRD A 1 215 1 MRD MRD . R 2 MPD B 1 201 1 MPD MPD . S 2 MPD B 1 202 4 MPD MPD . T 3 K B 1 203 3 K K . U 4 ACT B 1 204 2 ACT ACT . V 4 ACT B 1 205 3 ACT ACT . W 4 ACT B 1 206 4 ACT ACT . X 4 ACT B 1 207 6 ACT ACT . Y 4 ACT B 1 208 8 ACT ACT . Z 4 ACT B 1 209 12 ACT ACT . AA 7 NA B 1 210 1 NA NA . BA 7 NA B 1 211 2 NA NA . CA 8 HOH A 1 301 40 HOH HOH . CA 8 HOH A 2 302 16 HOH HOH . CA 8 HOH A 3 303 11 HOH HOH . CA 8 HOH A 4 304 19 HOH HOH . CA 8 HOH A 5 305 8 HOH HOH . CA 8 HOH A 6 306 37 HOH HOH . CA 8 HOH A 7 307 15 HOH HOH . CA 8 HOH A 8 308 17 HOH HOH . CA 8 HOH A 9 309 5 HOH HOH . CA 8 HOH A 10 310 29 HOH HOH . CA 8 HOH A 11 311 43 HOH HOH . CA 8 HOH A 12 312 18 HOH HOH . CA 8 HOH A 13 313 36 HOH HOH . CA 8 HOH A 14 314 25 HOH HOH . CA 8 HOH A 15 315 10 HOH HOH . CA 8 HOH A 16 316 13 HOH HOH . CA 8 HOH A 17 317 35 HOH HOH . CA 8 HOH A 18 318 31 HOH HOH . CA 8 HOH A 19 319 41 HOH HOH . CA 8 HOH A 20 320 32 HOH HOH . DA 8 HOH B 1 301 12 HOH HOH . DA 8 HOH B 2 302 39 HOH HOH . DA 8 HOH B 3 303 6 HOH HOH . DA 8 HOH B 4 304 42 HOH HOH . DA 8 HOH B 5 305 21 HOH HOH . DA 8 HOH B 6 306 26 HOH HOH . DA 8 HOH B 7 307 4 HOH HOH . DA 8 HOH B 8 308 30 HOH HOH . DA 8 HOH B 9 309 3 HOH HOH . DA 8 HOH B 10 310 9 HOH HOH . DA 8 HOH B 11 311 7 HOH HOH . DA 8 HOH B 12 312 23 HOH HOH . DA 8 HOH B 13 313 22 HOH HOH . DA 8 HOH B 14 314 28 HOH HOH . DA 8 HOH B 15 315 14 HOH HOH . DA 8 HOH B 16 316 20 HOH HOH . DA 8 HOH B 17 317 27 HOH HOH . DA 8 HOH B 18 318 2 HOH HOH . DA 8 HOH B 19 319 33 HOH HOH . DA 8 HOH B 20 320 38 HOH HOH . DA 8 HOH B 21 321 34 HOH HOH . DA 8 HOH B 22 322 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 16.699 16.933 4.071 1 45.51 ? C1 MPD 201 A 1 HETATM 2 C C2 MPD . . . C 2 17.387 17.934 5.006 1 53.46 ? C2 MPD 201 A 1 HETATM 3 O O2 MPD . . . C 2 17.459 17.293 6.251 1 55.58 ? O2 MPD 201 A 1 HETATM 4 C CM MPD . . . C 2 16.582 19.177 5.113 1 58.36 ? CM MPD 201 A 1 HETATM 5 C C3 MPD . . . C 2 18.753 18.33 4.424 1 45.21 ? C3 MPD 201 A 1 HETATM 6 C C4 MPD . . . C 2 19.555 19.147 5.434 1 57.3 ? C4 MPD 201 A 1 HETATM 7 O O4 MPD . . . C 2 19.799 18.497 6.626 1 51.21 ? O4 MPD 201 A 1 HETATM 8 C C5 MPD . . . C 2 20.831 19.587 4.755 1 58.68 ? C5 MPD 201 A 1 HETATM 9 H H11 MPD . . . C 2 17.327 16.495 3.476 1 54.63 ? H11 MPD 201 A 1 HETATM 10 H H12 MPD . . . C 2 16.032 17.356 3.507 1 54.63 ? H12 MPD 201 A 1 HETATM 11 H H13 MPD . . . C 2 16.242 16.229 4.559 1 54.63 ? H13 MPD 201 A 1 HETATM 12 H HO2 MPD . . . C 2 18.291 17.169 6.431 1 66.71 ? HO2 MPD 201 A 1 HETATM 13 H HM1 MPD . . . C 2 16.9 19.836 4.477 1 70.04 ? HM1 MPD 201 A 1 HETATM 14 H HM2 MPD . . . C 2 16.655 19.545 6.008 1 70.04 ? HM2 MPD 201 A 1 HETATM 15 H HM3 MPD . . . C 2 15.649 18.987 4.928 1 70.04 ? HM3 MPD 201 A 1 HETATM 16 H H31 MPD . . . C 2 18.64 18.831 3.601 1 54.26 ? H31 MPD 201 A 1 HETATM 17 H H32 MPD . . . C 2 19.251 17.541 4.159 1 54.26 ? H32 MPD 201 A 1 HETATM 18 H H4 MPD . . . C 2 19.036 19.907 5.741 1 68.77 ? H4 MPD 201 A 1 HETATM 19 H HO4 MPD . . . C 2 19.494 18.987 7.262 1 61.47 ? HO4 MPD 201 A 1 HETATM 20 H H51 MPD . . . C 2 21.6 19.156 5.159 1 70.42 ? H51 MPD 201 A 1 HETATM 21 H H52 MPD . . . C 2 20.814 19.357 3.813 1 70.42 ? H52 MPD 201 A 1 HETATM 22 H H53 MPD . . . C 2 20.946 20.547 4.831 1 70.42 ? H53 MPD 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #