data_7OQD # _model_server_result.job_id oshq6MuXsGSdTwaTlKqhQQ _model_server_result.datetime_utc '2024-11-21 18:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7OQD # _exptl.entry_id 7OQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.219 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-O-sulfo-beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OQD _cell.length_a 76.175 _cell.length_b 79.196 _cell.length_c 91.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 38 AAA ASP 37 1_555 C CA CA . AAA CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc2 A OD1 ASP 39 AAA ASP 38 1_555 C CA CA . AAA CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A OD1 ASP 329 AAA ASP 328 1_555 C CA CA . AAA CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc4 A OD2 ASP 329 AAA ASP 328 1_555 C CA CA . AAA CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 A OD1 ASN 330 AAA ASN 329 1_555 C CA CA . AAA CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc6 B O1S SGA . AAA SGA 601 1_555 C CA CA . AAA CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? # _chem_comp.formula 'C6 H12 O9 S' _chem_comp.formula_weight 260.219 _chem_comp.id SGA _chem_comp.mon_nstd_flag n _chem_comp.name 3-O-sulfo-beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms O3-SULFONYLGALACTOSE;3-O-sulfo-beta-D-galactose;3-O-sulfo-D-galactose;3-O-sulfo-galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SGA sing 290 n n C1 O1 SGA sing 291 n n C1 O5 SGA sing 292 n n C1 H1 SGA sing 293 n n C2 C3 SGA sing 294 n n C2 O2 SGA sing 295 n n C2 H2 SGA sing 296 n n C3 C4 SGA sing 297 n n C3 O3 SGA sing 298 n n C3 H3 SGA sing 299 n n C4 C5 SGA sing 300 n n C4 O4 SGA sing 301 n n C4 H4 SGA sing 302 n n C5 C6 SGA sing 303 n n C5 O5 SGA sing 304 n n C5 H5 SGA sing 305 n n C6 O6 SGA sing 306 n n C6 H61 SGA sing 307 n n C6 H62 SGA sing 308 n n O1 HO1 SGA sing 309 n n O2 HO2 SGA sing 310 n n O3 S SGA sing 311 n n O4 HO4 SGA sing 312 n n O6 HO6 SGA sing 313 n n S O1S SGA doub 314 n n S O2S SGA doub 315 n n S O3S SGA sing 316 n n O3S HOS3 SGA sing 317 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SGA DGalp[3S]b 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SGA 3-sulfo-b-D-galactopyranose 'COMMON NAME' GMML 1 SGA b-D-Galp3SO3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 7OQD _atom_sites.fract_transf_matrix[1][1] 0.013128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SGA AAA 1 601 601 SGA 3SL . C 3 CA AAA 1 602 1 CA CA . D 4 HOH AAA 1 701 181 HOH HOH . D 4 HOH AAA 2 702 78 HOH HOH . D 4 HOH AAA 3 703 132 HOH HOH . D 4 HOH AAA 4 704 51 HOH HOH . D 4 HOH AAA 5 705 104 HOH HOH . D 4 HOH AAA 6 706 77 HOH HOH . D 4 HOH AAA 7 707 114 HOH HOH . D 4 HOH AAA 8 708 65 HOH HOH . D 4 HOH AAA 9 709 119 HOH HOH . D 4 HOH AAA 10 710 43 HOH HOH . D 4 HOH AAA 11 711 66 HOH HOH . D 4 HOH AAA 12 712 38 HOH HOH . D 4 HOH AAA 13 713 13 HOH HOH . D 4 HOH AAA 14 714 2 HOH HOH . D 4 HOH AAA 15 715 73 HOH HOH . D 4 HOH AAA 16 716 136 HOH HOH . D 4 HOH AAA 17 717 11 HOH HOH . D 4 HOH AAA 18 718 164 HOH HOH . D 4 HOH AAA 19 719 124 HOH HOH . D 4 HOH AAA 20 720 93 HOH HOH . D 4 HOH AAA 21 721 19 HOH HOH . D 4 HOH AAA 22 722 27 HOH HOH . D 4 HOH AAA 23 723 128 HOH HOH . D 4 HOH AAA 24 724 173 HOH HOH . D 4 HOH AAA 25 725 7 HOH HOH . D 4 HOH AAA 26 726 95 HOH HOH . D 4 HOH AAA 27 727 21 HOH HOH . D 4 HOH AAA 28 728 120 HOH HOH . D 4 HOH AAA 29 729 157 HOH HOH . D 4 HOH AAA 30 730 147 HOH HOH . D 4 HOH AAA 31 731 98 HOH HOH . D 4 HOH AAA 32 732 88 HOH HOH . D 4 HOH AAA 33 733 97 HOH HOH . D 4 HOH AAA 34 734 36 HOH HOH . D 4 HOH AAA 35 735 118 HOH HOH . D 4 HOH AAA 36 736 102 HOH HOH . D 4 HOH AAA 37 737 10 HOH HOH . D 4 HOH AAA 38 738 140 HOH HOH . D 4 HOH AAA 39 739 37 HOH HOH . D 4 HOH AAA 40 740 61 HOH HOH . D 4 HOH AAA 41 741 109 HOH HOH . D 4 HOH AAA 42 742 92 HOH HOH . D 4 HOH AAA 43 743 57 HOH HOH . D 4 HOH AAA 44 744 62 HOH HOH . D 4 HOH AAA 45 745 60 HOH HOH . D 4 HOH AAA 46 746 178 HOH HOH . D 4 HOH AAA 47 747 20 HOH HOH . D 4 HOH AAA 48 748 34 HOH HOH . D 4 HOH AAA 49 749 54 HOH HOH . D 4 HOH AAA 50 750 41 HOH HOH . D 4 HOH AAA 51 751 154 HOH HOH . D 4 HOH AAA 52 752 53 HOH HOH . D 4 HOH AAA 53 753 56 HOH HOH . D 4 HOH AAA 54 754 87 HOH HOH . D 4 HOH AAA 55 755 117 HOH HOH . D 4 HOH AAA 56 756 63 HOH HOH . D 4 HOH AAA 57 757 86 HOH HOH . D 4 HOH AAA 58 758 25 HOH HOH . D 4 HOH AAA 59 759 94 HOH HOH . D 4 HOH AAA 60 760 24 HOH HOH . D 4 HOH AAA 61 761 35 HOH HOH . D 4 HOH AAA 62 762 177 HOH HOH . D 4 HOH AAA 63 763 14 HOH HOH . D 4 HOH AAA 64 764 44 HOH HOH . D 4 HOH AAA 65 765 15 HOH HOH . D 4 HOH AAA 66 766 174 HOH HOH . D 4 HOH AAA 67 767 125 HOH HOH . D 4 HOH AAA 68 768 151 HOH HOH . D 4 HOH AAA 69 769 82 HOH HOH . D 4 HOH AAA 70 770 129 HOH HOH . D 4 HOH AAA 71 771 83 HOH HOH . D 4 HOH AAA 72 772 47 HOH HOH . D 4 HOH AAA 73 773 105 HOH HOH . D 4 HOH AAA 74 774 1 HOH HOH . D 4 HOH AAA 75 775 99 HOH HOH . D 4 HOH AAA 76 776 12 HOH HOH . D 4 HOH AAA 77 777 111 HOH HOH . D 4 HOH AAA 78 778 8 HOH HOH . D 4 HOH AAA 79 779 167 HOH HOH . D 4 HOH AAA 80 780 39 HOH HOH . D 4 HOH AAA 81 781 67 HOH HOH . D 4 HOH AAA 82 782 22 HOH HOH . D 4 HOH AAA 83 783 169 HOH HOH . D 4 HOH AAA 84 784 70 HOH HOH . D 4 HOH AAA 85 785 112 HOH HOH . D 4 HOH AAA 86 786 42 HOH HOH . D 4 HOH AAA 87 787 106 HOH HOH . D 4 HOH AAA 88 788 59 HOH HOH . D 4 HOH AAA 89 789 148 HOH HOH . D 4 HOH AAA 90 790 158 HOH HOH . D 4 HOH AAA 91 791 81 HOH HOH . D 4 HOH AAA 92 792 84 HOH HOH . D 4 HOH AAA 93 793 79 HOH HOH . D 4 HOH AAA 94 794 64 HOH HOH . D 4 HOH AAA 95 795 31 HOH HOH . D 4 HOH AAA 96 796 116 HOH HOH . D 4 HOH AAA 97 797 163 HOH HOH . D 4 HOH AAA 98 798 108 HOH HOH . D 4 HOH AAA 99 799 74 HOH HOH . D 4 HOH AAA 100 800 127 HOH HOH . D 4 HOH AAA 101 801 76 HOH HOH . D 4 HOH AAA 102 802 45 HOH HOH . D 4 HOH AAA 103 803 29 HOH HOH . D 4 HOH AAA 104 804 17 HOH HOH . D 4 HOH AAA 105 805 155 HOH HOH . D 4 HOH AAA 106 806 161 HOH HOH . D 4 HOH AAA 107 807 16 HOH HOH . D 4 HOH AAA 108 808 152 HOH HOH . D 4 HOH AAA 109 809 133 HOH HOH . D 4 HOH AAA 110 810 72 HOH HOH . D 4 HOH AAA 111 811 168 HOH HOH . D 4 HOH AAA 112 812 126 HOH HOH . D 4 HOH AAA 113 813 110 HOH HOH . D 4 HOH AAA 114 814 122 HOH HOH . D 4 HOH AAA 115 815 149 HOH HOH . D 4 HOH AAA 116 816 135 HOH HOH . D 4 HOH AAA 117 817 89 HOH HOH . D 4 HOH AAA 118 818 80 HOH HOH . D 4 HOH AAA 119 819 75 HOH HOH . D 4 HOH AAA 120 820 6 HOH HOH . D 4 HOH AAA 121 821 50 HOH HOH . D 4 HOH AAA 122 822 91 HOH HOH . D 4 HOH AAA 123 823 159 HOH HOH . D 4 HOH AAA 124 824 52 HOH HOH . D 4 HOH AAA 125 825 150 HOH HOH . D 4 HOH AAA 126 826 46 HOH HOH . D 4 HOH AAA 127 827 33 HOH HOH . D 4 HOH AAA 128 828 71 HOH HOH . D 4 HOH AAA 129 829 90 HOH HOH . D 4 HOH AAA 130 830 55 HOH HOH . D 4 HOH AAA 131 831 107 HOH HOH . D 4 HOH AAA 132 832 68 HOH HOH . D 4 HOH AAA 133 833 145 HOH HOH . D 4 HOH AAA 134 834 176 HOH HOH . D 4 HOH AAA 135 835 5 HOH HOH . D 4 HOH AAA 136 836 49 HOH HOH . D 4 HOH AAA 137 837 28 HOH HOH . D 4 HOH AAA 138 838 30 HOH HOH . D 4 HOH AAA 139 839 172 HOH HOH . D 4 HOH AAA 140 840 69 HOH HOH . D 4 HOH AAA 141 841 4 HOH HOH . D 4 HOH AAA 142 842 153 HOH HOH . D 4 HOH AAA 143 843 170 HOH HOH . D 4 HOH AAA 144 844 23 HOH HOH . D 4 HOH AAA 145 845 32 HOH HOH . D 4 HOH AAA 146 846 58 HOH HOH . D 4 HOH AAA 147 847 165 HOH HOH . D 4 HOH AAA 148 848 3 HOH HOH . D 4 HOH AAA 149 849 146 HOH HOH . D 4 HOH AAA 150 850 26 HOH HOH . D 4 HOH AAA 151 851 166 HOH HOH . D 4 HOH AAA 152 852 160 HOH HOH . D 4 HOH AAA 153 853 18 HOH HOH . D 4 HOH AAA 154 854 113 HOH HOH . D 4 HOH AAA 155 855 40 HOH HOH . D 4 HOH AAA 156 856 180 HOH HOH . D 4 HOH AAA 157 857 130 HOH HOH . D 4 HOH AAA 158 858 103 HOH HOH . D 4 HOH AAA 159 859 156 HOH HOH . D 4 HOH AAA 160 860 134 HOH HOH . D 4 HOH AAA 161 861 171 HOH HOH . D 4 HOH AAA 162 862 101 HOH HOH . D 4 HOH AAA 163 863 85 HOH HOH . D 4 HOH AAA 164 864 48 HOH HOH . D 4 HOH AAA 165 865 123 HOH HOH . D 4 HOH AAA 166 866 144 HOH HOH . D 4 HOH AAA 167 867 179 HOH HOH . D 4 HOH AAA 168 868 175 HOH HOH . D 4 HOH AAA 169 869 131 HOH HOH . D 4 HOH AAA 170 870 9 HOH HOH . D 4 HOH AAA 171 871 96 HOH HOH . D 4 HOH AAA 172 872 137 HOH HOH . D 4 HOH AAA 173 873 115 HOH HOH . D 4 HOH AAA 174 874 139 HOH HOH . D 4 HOH AAA 175 875 143 HOH HOH . D 4 HOH AAA 176 876 138 HOH HOH . D 4 HOH AAA 177 877 141 HOH HOH . D 4 HOH AAA 178 878 142 HOH HOH . D 4 HOH AAA 179 879 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SGA . . . B 2 -5.771 -5.637 15.097 1 15.18 0 C1 SGA 601 AAA 1 HETATM 2 C C2 SGA . . . B 2 -6.714 -6.767 14.697 1 14.72 0 C2 SGA 601 AAA 1 HETATM 3 C C3 SGA . . . B 2 -7.814 -6.896 15.712 1 14.5 0 C3 SGA 601 AAA 1 HETATM 4 C C4 SGA . . . B 2 -7.217 -7.126 17.098 1 14.59 0 C4 SGA 601 AAA 1 HETATM 5 C C5 SGA . . . B 2 -6.349 -5.917 17.422 1 14.11 0 C5 SGA 601 AAA 1 HETATM 6 C C6 SGA . . . B 2 -5.679 -6.002 18.773 1 13.59 0 C6 SGA 601 AAA 1 HETATM 7 O O1 SGA . . . B 2 -4.656 -5.627 14.235 1 15.88 0 O1 SGA 601 AAA 1 HETATM 8 O O2 SGA . . . B 2 -7.279 -6.494 13.42 1 15.01 0 O2 SGA 601 AAA 1 HETATM 9 O O3 SGA . . . B 2 -8.721 -7.983 15.282 1 14.28 0 O3 SGA 601 AAA 1 HETATM 10 O O4 SGA . . . B 2 -6.413 -8.313 17.196 1 14.04 0 O4 SGA 601 AAA 1 HETATM 11 O O5 SGA . . . B 2 -5.302 -5.82 16.429 1 15.35 0 O5 SGA 601 AAA 1 HETATM 12 O O6 SGA . . . B 2 -6.597 -5.732 19.831 1 13.34 0 O6 SGA 601 AAA 1 HETATM 13 S S SGA . . . B 2 -10.132 -8.165 16.009 1 16.47 0 S SGA 601 AAA 1 HETATM 14 O O1S SGA . . . B 2 -10.877 -9.18 15.269 1 15.61 0 O1S SGA 601 AAA 1 HETATM 15 O O2S SGA . . . B 2 -10.838 -6.882 16.034 1 16.58 0 O2S SGA 601 AAA 1 HETATM 16 O O3S SGA . . . B 2 -9.759 -8.592 17.33 1 15.1 0 O3S SGA 601 AAA 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #