data_7OQO # _model_server_result.job_id JUzzSrWzzMgDJF4_dUyfhg _model_server_result.datetime_utc '2024-10-19 15:32:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7OQO # _exptl.entry_id 7OQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.65 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-oxidanyl-N-[[(3R)-3-oxidanyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]methyl]-4-[[(3S)-3-propan-2-yl-2-azaspiro[3.3]heptan-2-yl]methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OQO _cell.length_a 63.76 _cell.length_b 63.76 _cell.length_c 224.12 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 338 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 388 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H38 N6 O3' _chem_comp.formula_weight 518.65 _chem_comp.id 0BA _chem_comp.mon_nstd_flag . _chem_comp.name 2-oxidanyl-N-[[(3R)-3-oxidanyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]methyl]-4-[[(3S)-3-propan-2-yl-2-azaspiro[3.3]heptan-2-yl]methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C02 0BA sing 1 n n C01 C02 0BA sing 2 n n C02 C04 0BA sing 3 n n C04 N05 0BA sing 4 n n C04 C35 0BA sing 5 n n C06 N05 0BA sing 6 n n C06 C07 0BA sing 7 n n C38 C35 0BA sing 8 n n C38 C37 0BA sing 9 n n N05 C34 0BA sing 10 n n C07 C08 0BA doub 11 n y C07 C10 0BA sing 12 n y C35 C34 0BA sing 13 n n C35 C36 0BA sing 14 n n C08 C09 0BA sing 15 n y C10 C11 0BA doub 16 n y C37 C36 0BA sing 17 n n C09 C13 0BA doub 18 n y C30 C29 0BA doub 19 n y C30 N31 0BA sing 20 n y C29 C28 0BA sing 21 n y C11 C13 0BA sing 22 n y C11 O12 0BA sing 23 n n C13 C14 0BA sing 24 n n C20 C19 0BA sing 25 n n C20 N22 0BA sing 26 n n N31 C27 0BA sing 27 n y O33 C14 0BA doub 28 n n C19 C18 0BA sing 29 n n C28 C27 0BA doub 30 n y C28 C23 0BA sing 31 n y C14 N15 0BA sing 32 n n N22 C23 0BA sing 33 n n N22 C21 0BA sing 34 n n C27 N26 0BA sing 35 n y C18 C17 0BA sing 36 n n C23 N24 0BA doub 37 n y N15 C16 0BA sing 38 n n C21 C17 0BA sing 39 n n C17 C16 0BA sing 40 n n C17 O32 0BA sing 41 n n N26 C25 0BA doub 42 n y N24 C25 0BA sing 43 n y C10 H1 0BA sing 44 n n C20 H2 0BA sing 45 n n C20 H3 0BA sing 46 n n C21 H4 0BA sing 47 n n C21 H5 0BA sing 48 n n C01 H6 0BA sing 49 n n C01 H7 0BA sing 50 n n C01 H8 0BA sing 51 n n C02 H9 0BA sing 52 n n C03 H10 0BA sing 53 n n C03 H11 0BA sing 54 n n C03 H12 0BA sing 55 n n C04 H13 0BA sing 56 n n C06 H14 0BA sing 57 n n C06 H15 0BA sing 58 n n C08 H16 0BA sing 59 n n C09 H17 0BA sing 60 n n C16 H18 0BA sing 61 n n C16 H19 0BA sing 62 n n C18 H20 0BA sing 63 n n C18 H21 0BA sing 64 n n C19 H22 0BA sing 65 n n C19 H23 0BA sing 66 n n C25 H24 0BA sing 67 n n C29 H25 0BA sing 68 n n C30 H26 0BA sing 69 n n C34 H27 0BA sing 70 n n C34 H28 0BA sing 71 n n C36 H29 0BA sing 72 n n C36 H30 0BA sing 73 n n C37 H31 0BA sing 74 n n C37 H32 0BA sing 75 n n C38 H33 0BA sing 76 n n C38 H34 0BA sing 77 n n N15 H36 0BA sing 78 n n N31 H37 0BA sing 79 n n O12 H38 0BA sing 80 n n O32 H39 0BA sing 81 n n # _atom_sites.entry_id 7OQO _atom_sites.fract_transf_matrix[1][1] 0.015684 _atom_sites.fract_transf_matrix[1][2] 0.009055 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0BA A 1 601 601 0BA LIG . D 4 ACT B 1 401 401 ACT ACT . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 3 HOH HOH . E 5 HOH A 3 703 10 HOH HOH . E 5 HOH A 4 704 2 HOH HOH . E 5 HOH A 5 705 6 HOH HOH . E 5 HOH A 6 706 11 HOH HOH . E 5 HOH A 7 707 9 HOH HOH . E 5 HOH A 8 708 12 HOH HOH . E 5 HOH A 9 709 5 HOH HOH . E 5 HOH A 10 710 8 HOH HOH . F 5 HOH B 1 501 7 HOH HOH . F 5 HOH B 2 502 17 HOH HOH . F 5 HOH B 3 503 19 HOH HOH . F 5 HOH B 4 504 14 HOH HOH . F 5 HOH B 5 505 4 HOH HOH . F 5 HOH B 6 506 18 HOH HOH . F 5 HOH B 7 507 13 HOH HOH . F 5 HOH B 8 508 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 0BA . . . C 3 -42.443 30.845 22.782 1 43.32 ? C10 0BA 601 A 1 HETATM 2 C C13 0BA . . . C 3 -44.464 32.058 24.062 1 47.74 ? C13 0BA 601 A 1 HETATM 3 C C17 0BA . . . C 3 -44.028 35.934 26.776 1 59.38 ? C17 0BA 601 A 1 HETATM 4 C C20 0BA . . . C 3 -43.336 37.332 24.302 1 56.97 ? C20 0BA 601 A 1 HETATM 5 C C21 0BA . . . C 3 -42.621 35.869 26.19 1 54.64 ? C21 0BA 601 A 1 HETATM 6 C C28 0BA . . . C 3 -40.991 39.283 25.042 1 52.15 ? C28 0BA 601 A 1 HETATM 7 C C01 0BA . . . C 3 -40.286 25.164 20.265 1 47.21 ? C01 0BA 601 A 1 HETATM 8 C C02 0BA . . . C 3 -40.526 26.608 20.834 1 42.2 ? C02 0BA 601 A 1 HETATM 9 C C03 0BA . . . C 3 -39.989 27.56 19.719 1 46.1 ? C03 0BA 601 A 1 HETATM 10 C C04 0BA . . . C 3 -42.049 26.843 21.024 1 46.02 ? C04 0BA 601 A 1 HETATM 11 C C06 0BA . . . C 3 -42.949 28.811 21.027 1 52.61 ? C06 0BA 601 A 1 HETATM 12 C C07 0BA . . . C 3 -43.45 29.949 22.045 1 52.03 ? C07 0BA 601 A 1 HETATM 13 C C08 0BA . . . C 3 -44.998 30.103 22.318 1 55.28 ? C08 0BA 601 A 1 HETATM 14 C C09 0BA . . . C 3 -45.497 31.167 23.325 1 52.35 ? C09 0BA 601 A 1 HETATM 15 C C11 0BA . . . C 3 -42.956 31.879 23.788 1 45.19 ? C11 0BA 601 A 1 HETATM 16 C C14 0BA . . . C 3 -44.837 33.12 25.108 1 53.27 ? C14 0BA 601 A 1 HETATM 17 C C16 0BA . . . C 3 -44.404 34.46 27.175 1 56.82 ? C16 0BA 601 A 1 HETATM 18 C C18 0BA . . . C 3 -45.038 36.503 25.876 1 61.75 ? C18 0BA 601 A 1 HETATM 19 C C19 0BA . . . C 3 -44.658 37.608 24.996 1 62 ? C19 0BA 601 A 1 HETATM 20 C C23 0BA . . . C 3 -41.447 38.152 25.944 1 51.64 ? C23 0BA 601 A 1 HETATM 21 C C25 0BA . . . C 3 -40.177 39.129 27.856 1 61.5 ? C25 0BA 601 A 1 HETATM 22 C C27 0BA . . . C 3 -40.195 40.27 25.555 1 56.68 ? C27 0BA 601 A 1 HETATM 23 C C29 0BA . . . C 3 -41.235 39.567 23.713 1 58.52 ? C29 0BA 601 A 1 HETATM 24 C C30 0BA . . . C 3 -40.582 40.752 23.403 1 66.63 ? C30 0BA 601 A 1 HETATM 25 C C34 0BA . . . C 3 -43.177 27.362 22.568 1 50.78 ? C34 0BA 601 A 1 HETATM 26 C C35 0BA . . . C 3 -42.543 26.161 22.168 1 49.85 ? C35 0BA 601 A 1 HETATM 27 C C36 0BA . . . C 3 -42.497 25.322 23.454 1 52.33 ? C36 0BA 601 A 1 HETATM 28 C C37 0BA . . . C 3 -42.879 24.104 22.619 1 52.58 ? C37 0BA 601 A 1 HETATM 29 C C38 0BA . . . C 3 -43.385 25.051 21.533 1 55.25 ? C38 0BA 601 A 1 HETATM 30 N N05 0BA . . . C 3 -42.358 28.085 21.646 1 51.47 ? N05 0BA 601 A 1 HETATM 31 N N15 0BA . . . C 3 -43.907 33.461 26.194 1 48.88 ? N15 0BA 601 A 1 HETATM 32 N N22 0BA . . . C 3 -42.283 37.113 25.381 1 56.79 ? N22 0BA 601 A 1 HETATM 33 N N24 0BA . . . C 3 -41.043 38.084 27.315 1 58.62 ? N24 0BA 601 A 1 HETATM 34 N N26 0BA . . . C 3 -39.752 40.223 26.999 1 55.13 ? N26 0BA 601 A 1 HETATM 35 N N31 0BA . . . C 3 -39.946 41.188 24.534 1 65.26 ? N31 0BA 601 A 1 HETATM 36 O O12 0BA . . . C 3 -42.122 32.719 24.516 1 50.74 ? O12 0BA 601 A 1 HETATM 37 O O32 0BA . . . C 3 -44.007 36.691 28.026 1 62.88 ? O32 0BA 601 A 1 HETATM 38 O O33 0BA . . . C 3 -45.894 33.639 25.065 1 59.37 ? O33 0BA 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 38 #