data_7OR1 # _model_server_result.job_id Fp8vsuHMffo_ebBc3OE6qw _model_server_result.datetime_utc '2024-11-05 04:49:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7or1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1204}' # _entry.id 7OR1 # _exptl.entry_id 7OR1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OR1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 R N N ? 5 U N N ? 5 Y N N ? 5 FA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 2001 NAG 2 n E NAG 2 E 2 NAG A 2002 NAG 2 n F NAG 1 F 1 NAG B 2001 NAG 2 n F NAG 2 F 2 NAG B 2002 NAG 2 n G NAG 1 G 1 NAG C 2001 NAG 2 n G NAG 2 G 2 NAG C 2002 NAG 2 n H NAG 1 H 1 NAG D 2001 NAG 2 n H NAG 2 H 2 NAG D 2002 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 747 A ASN 747 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 753 A ASN 753 1_555 M C1 NAG . A NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 B ND2 ASN 747 B ASN 747 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 753 B ASN 753 1_555 S C1 NAG . B NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C ND2 ASN 747 C ASN 747 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 C ND2 ASN 753 C ASN 753 1_555 Z C1 NAG . C NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 D ND2 ASN 747 D ASN 747 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 D ND2 ASN 753 D ASN 753 1_555 GA C1 NAG . D NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A OE2 GLU 788 A GLU 788 1_555 L CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 A OE1 GLN 791 A GLN 791 1_555 L CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc3 A OD1 ASN 805 A ASN 805 1_555 L CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc4 B OE2 GLU 788 B GLU 788 1_555 R CA CA . B CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 B OE1 GLN 791 B GLN 791 1_555 R CA CA . B CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc6 B OD1 ASN 805 B ASN 805 1_555 R CA CA . B CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc7 C OE2 GLU 788 C GLU 788 1_555 Y CA CA . C CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 C OE1 GLN 791 C GLN 791 1_555 Y CA CA . C CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc9 C OD1 ASN 805 C ASN 805 1_555 Y CA CA . C CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc10 D OE2 GLU 788 D GLU 788 1_555 FA CA CA . D CA 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 D OE1 GLN 791 D GLN 791 1_555 FA CA CA . D CA 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc12 D OD1 ASN 805 D ASN 805 1_555 FA CA CA . D CA 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OR1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 0IG A 1 1201 1101 0IG CS1 . J 4 PC1 A 1 1202 1301 PC1 PC1 . K 4 PC1 A 1 1203 1501 PC1 PC1 . L 5 CA A 1 1204 1601 CA CA . M 6 NAG A 1 1205 2003 NAG NAG . N 7 IHP A 1 1206 1201 IHP IHP . O 3 0IG B 1 1201 1101 0IG CS1 . P 4 PC1 B 1 1202 1301 PC1 PC1 . Q 4 PC1 B 1 1203 1501 PC1 PC1 . R 5 CA B 1 1204 1601 CA CA . S 6 NAG B 1 1205 2003 NAG NAG . T 7 IHP B 1 1206 1201 IHP IHP . U 5 CA B 1 1207 1 CA CA . V 3 0IG C 1 1201 1101 0IG CS1 . W 4 PC1 C 1 1202 1301 PC1 PC1 . X 4 PC1 C 1 1203 1501 PC1 PC1 . Y 5 CA C 1 1204 1601 CA CA . Z 6 NAG C 1 1205 2003 NAG NAG . AA 7 IHP C 1 1206 1201 IHP IHP . BA 7 IHP D 1 1201 1201 IHP IHP . CA 3 0IG D 1 1202 1101 0IG CS1 . DA 4 PC1 D 1 1203 1301 PC1 PC1 . EA 4 PC1 D 1 1204 1501 PC1 PC1 . FA 5 CA D 1 1205 1601 CA CA . GA 6 NAG D 1 1206 2003 NAG NAG . HA 8 HOH A 1 1301 3011 HOH HOH . HA 8 HOH A 2 1302 3002 HOH HOH . HA 8 HOH A 3 1303 3007 HOH HOH . HA 8 HOH A 4 1304 3012 HOH HOH . HA 8 HOH A 5 1305 3006 HOH HOH . HA 8 HOH A 6 1306 3008 HOH HOH . HA 8 HOH A 7 1307 3013 HOH HOH . HA 8 HOH A 8 1308 3004 HOH HOH . HA 8 HOH A 9 1309 3009 HOH HOH . HA 8 HOH A 10 1310 3001 HOH HOH . HA 8 HOH A 11 1311 3010 HOH HOH . HA 8 HOH A 12 1312 3005 HOH HOH . HA 8 HOH A 13 1313 3003 HOH HOH . IA 8 HOH B 1 1301 3011 HOH HOH . IA 8 HOH B 2 1302 3002 HOH HOH . IA 8 HOH B 3 1303 3007 HOH HOH . IA 8 HOH B 4 1304 3012 HOH HOH . IA 8 HOH B 5 1305 3004 HOH HOH . IA 8 HOH B 6 1306 3013 HOH HOH . IA 8 HOH B 7 1307 3009 HOH HOH . IA 8 HOH B 8 1308 3008 HOH HOH . IA 8 HOH B 9 1309 3001 HOH HOH . IA 8 HOH B 10 1310 3009 HOH HOH . IA 8 HOH B 11 1311 3006 HOH HOH . IA 8 HOH B 12 1312 3010 HOH HOH . IA 8 HOH B 13 1313 3005 HOH HOH . IA 8 HOH B 14 1314 3003 HOH HOH . JA 8 HOH C 1 1301 3011 HOH HOH . JA 8 HOH C 2 1302 3002 HOH HOH . JA 8 HOH C 3 1303 3007 HOH HOH . JA 8 HOH C 4 1304 3012 HOH HOH . JA 8 HOH C 5 1305 3009 HOH HOH . JA 8 HOH C 6 1306 3008 HOH HOH . JA 8 HOH C 7 1307 3013 HOH HOH . JA 8 HOH C 8 1308 3004 HOH HOH . JA 8 HOH C 9 1309 3006 HOH HOH . JA 8 HOH C 10 1310 3010 HOH HOH . JA 8 HOH C 11 1311 3001 HOH HOH . JA 8 HOH C 12 1312 3005 HOH HOH . JA 8 HOH C 13 1313 3003 HOH HOH . KA 8 HOH D 1 1301 3011 HOH HOH . KA 8 HOH D 2 1302 3002 HOH HOH . KA 8 HOH D 3 1303 3007 HOH HOH . KA 8 HOH D 4 1304 3012 HOH HOH . KA 8 HOH D 5 1305 3006 HOH HOH . KA 8 HOH D 6 1306 3008 HOH HOH . KA 8 HOH D 7 1307 3013 HOH HOH . KA 8 HOH D 8 1308 3004 HOH HOH . KA 8 HOH D 9 1309 3001 HOH HOH . KA 8 HOH D 10 1310 3010 HOH HOH . KA 8 HOH D 11 1311 3005 HOH HOH . KA 8 HOH D 12 1312 3003 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 149.958 _atom_site.Cartn_y 187.386 _atom_site.Cartn_z 173.679 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 113.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #