data_7OR4
#
_model_server_result.job_id            LOmKn2r4kD3-gXlameFgng 
_model_server_result.datetime_utc      '2024-11-09 02:44:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7or4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    7OR4 
#
_exptl.entry_id    7OR4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.11 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'trimethylamine oxide' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7OR4 
_cell.length_a            149.443 
_cell.length_b            149.443 
_cell.length_c            269.388 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OR4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 755 B SER 755 1_555 D C3 2YI . B 2YI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 B OG SER 755 A SER 755 1_555 F C3 2YI . A 2YI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C3 H9 N O' 
_chem_comp.formula_weight    75.11 
_chem_comp.id                TMO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'trimethylamine oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NAC TMO sing 376 n n 
CAA HAA TMO sing 377 n n 
CAA HAAA TMO sing 378 n n 
CAA HAAB TMO sing 379 n n 
NAC CAD TMO sing 380 n n 
NAC CAB TMO sing 381 n n 
NAC OAE TMO sing 382 n n 
CAD HAD TMO sing 383 n n 
CAD HADA TMO sing 384 n n 
CAD HADB TMO sing 385 n n 
CAB HAB TMO sing 386 n n 
CAB HABA TMO sing 387 n n 
CAB HABB TMO sing 388 n n 
#
_atom_sites.entry_id                     7OR4 
_atom_sites.fract_transf_matrix[1][1]    0.006692 
_atom_sites.fract_transf_matrix[1][2]    0.003863 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TMO B 1 901 901 TMO TMO . 
D 3 2YI B 1 902 1 2YI 114 . 
E 2 TMO A 1 901 901 TMO TMO . 
F 3 2YI A 1 902 2 2YI 114 . 
G 4 HOH B 1 1001 93 HOH HOH . 
G 4 HOH B 2 1002 33 HOH HOH . 
G 4 HOH B 3 1003 8 HOH HOH . 
G 4 HOH B 4 1004 27 HOH HOH . 
G 4 HOH B 5 1005 54 HOH HOH . 
G 4 HOH B 6 1006 37 HOH HOH . 
G 4 HOH B 7 1007 24 HOH HOH . 
G 4 HOH B 8 1008 88 HOH HOH . 
G 4 HOH B 9 1009 62 HOH HOH . 
G 4 HOH B 10 1010 136 HOH HOH . 
G 4 HOH B 11 1011 125 HOH HOH . 
G 4 HOH B 12 1012 81 HOH HOH . 
G 4 HOH B 13 1013 35 HOH HOH . 
G 4 HOH B 14 1014 53 HOH HOH . 
G 4 HOH B 15 1015 13 HOH HOH . 
G 4 HOH B 16 1016 25 HOH HOH . 
G 4 HOH B 17 1017 42 HOH HOH . 
G 4 HOH B 18 1018 137 HOH HOH . 
G 4 HOH B 19 1019 133 HOH HOH . 
G 4 HOH B 20 1020 119 HOH HOH . 
G 4 HOH B 21 1021 2 HOH HOH . 
G 4 HOH B 22 1022 109 HOH HOH . 
G 4 HOH B 23 1023 57 HOH HOH . 
G 4 HOH B 24 1024 111 HOH HOH . 
G 4 HOH B 25 1025 18 HOH HOH . 
G 4 HOH B 26 1026 19 HOH HOH . 
G 4 HOH B 27 1027 77 HOH HOH . 
G 4 HOH B 28 1028 142 HOH HOH . 
G 4 HOH B 29 1029 49 HOH HOH . 
G 4 HOH B 30 1030 7 HOH HOH . 
G 4 HOH B 31 1031 121 HOH HOH . 
G 4 HOH B 32 1032 56 HOH HOH . 
G 4 HOH B 33 1033 5 HOH HOH . 
G 4 HOH B 34 1034 69 HOH HOH . 
G 4 HOH B 35 1035 20 HOH HOH . 
G 4 HOH B 36 1036 4 HOH HOH . 
G 4 HOH B 37 1037 6 HOH HOH . 
G 4 HOH B 38 1038 29 HOH HOH . 
G 4 HOH B 39 1039 10 HOH HOH . 
G 4 HOH B 40 1040 15 HOH HOH . 
G 4 HOH B 41 1041 61 HOH HOH . 
G 4 HOH B 42 1042 146 HOH HOH . 
G 4 HOH B 43 1043 28 HOH HOH . 
G 4 HOH B 44 1044 151 HOH HOH . 
G 4 HOH B 45 1045 89 HOH HOH . 
G 4 HOH B 46 1046 86 HOH HOH . 
G 4 HOH B 47 1047 68 HOH HOH . 
G 4 HOH B 48 1048 16 HOH HOH . 
G 4 HOH B 49 1049 149 HOH HOH . 
G 4 HOH B 50 1050 9 HOH HOH . 
G 4 HOH B 51 1051 103 HOH HOH . 
G 4 HOH B 52 1052 90 HOH HOH . 
G 4 HOH B 53 1053 70 HOH HOH . 
G 4 HOH B 54 1054 120 HOH HOH . 
G 4 HOH B 55 1055 94 HOH HOH . 
G 4 HOH B 56 1056 159 HOH HOH . 
G 4 HOH B 57 1057 75 HOH HOH . 
G 4 HOH B 58 1058 163 HOH HOH . 
G 4 HOH B 59 1059 52 HOH HOH . 
G 4 HOH B 60 1060 158 HOH HOH . 
G 4 HOH B 61 1061 173 HOH HOH . 
G 4 HOH B 62 1062 79 HOH HOH . 
G 4 HOH B 63 1063 38 HOH HOH . 
G 4 HOH B 64 1064 96 HOH HOH . 
G 4 HOH B 65 1065 73 HOH HOH . 
G 4 HOH B 66 1066 147 HOH HOH . 
G 4 HOH B 67 1067 127 HOH HOH . 
G 4 HOH B 68 1068 104 HOH HOH . 
G 4 HOH B 69 1069 65 HOH HOH . 
G 4 HOH B 70 1070 107 HOH HOH . 
G 4 HOH B 71 1071 11 HOH HOH . 
G 4 HOH B 72 1072 162 HOH HOH . 
G 4 HOH B 73 1073 115 HOH HOH . 
G 4 HOH B 74 1074 50 HOH HOH . 
G 4 HOH B 75 1075 87 HOH HOH . 
G 4 HOH B 76 1076 46 HOH HOH . 
G 4 HOH B 77 1077 51 HOH HOH . 
G 4 HOH B 78 1078 60 HOH HOH . 
G 4 HOH B 79 1079 84 HOH HOH . 
G 4 HOH B 80 1080 41 HOH HOH . 
G 4 HOH B 81 1081 100 HOH HOH . 
G 4 HOH B 82 1082 14 HOH HOH . 
G 4 HOH B 83 1083 114 HOH HOH . 
G 4 HOH B 84 1084 117 HOH HOH . 
G 4 HOH B 85 1085 141 HOH HOH . 
G 4 HOH B 86 1086 91 HOH HOH . 
G 4 HOH B 87 1087 153 HOH HOH . 
G 4 HOH B 88 1088 26 HOH HOH . 
G 4 HOH B 89 1089 92 HOH HOH . 
G 4 HOH B 90 1090 34 HOH HOH . 
G 4 HOH B 91 1091 128 HOH HOH . 
G 4 HOH B 92 1092 64 HOH HOH . 
G 4 HOH B 93 1093 174 HOH HOH . 
G 4 HOH B 94 1094 155 HOH HOH . 
G 4 HOH B 95 1095 169 HOH HOH . 
G 4 HOH B 96 1096 154 HOH HOH . 
H 4 HOH A 1 1001 176 HOH HOH . 
H 4 HOH A 2 1002 95 HOH HOH . 
H 4 HOH A 3 1003 48 HOH HOH . 
H 4 HOH A 4 1004 72 HOH HOH . 
H 4 HOH A 5 1005 135 HOH HOH . 
H 4 HOH A 6 1006 140 HOH HOH . 
H 4 HOH A 7 1007 145 HOH HOH . 
H 4 HOH A 8 1008 157 HOH HOH . 
H 4 HOH A 9 1009 122 HOH HOH . 
H 4 HOH A 10 1010 148 HOH HOH . 
H 4 HOH A 11 1011 129 HOH HOH . 
H 4 HOH A 12 1012 58 HOH HOH . 
H 4 HOH A 13 1013 39 HOH HOH . 
H 4 HOH A 14 1014 36 HOH HOH . 
H 4 HOH A 15 1015 152 HOH HOH . 
H 4 HOH A 16 1016 21 HOH HOH . 
H 4 HOH A 17 1017 80 HOH HOH . 
H 4 HOH A 18 1018 99 HOH HOH . 
H 4 HOH A 19 1019 126 HOH HOH . 
H 4 HOH A 20 1020 43 HOH HOH . 
H 4 HOH A 21 1021 30 HOH HOH . 
H 4 HOH A 22 1022 66 HOH HOH . 
H 4 HOH A 23 1023 67 HOH HOH . 
H 4 HOH A 24 1024 132 HOH HOH . 
H 4 HOH A 25 1025 106 HOH HOH . 
H 4 HOH A 26 1026 161 HOH HOH . 
H 4 HOH A 27 1027 47 HOH HOH . 
H 4 HOH A 28 1028 134 HOH HOH . 
H 4 HOH A 29 1029 139 HOH HOH . 
H 4 HOH A 30 1030 118 HOH HOH . 
H 4 HOH A 31 1031 17 HOH HOH . 
H 4 HOH A 32 1032 138 HOH HOH . 
H 4 HOH A 33 1033 105 HOH HOH . 
H 4 HOH A 34 1034 31 HOH HOH . 
H 4 HOH A 35 1035 71 HOH HOH . 
H 4 HOH A 36 1036 116 HOH HOH . 
H 4 HOH A 37 1037 32 HOH HOH . 
H 4 HOH A 38 1038 164 HOH HOH . 
H 4 HOH A 39 1039 45 HOH HOH . 
H 4 HOH A 40 1040 85 HOH HOH . 
H 4 HOH A 41 1041 160 HOH HOH . 
H 4 HOH A 42 1042 40 HOH HOH . 
H 4 HOH A 43 1043 165 HOH HOH . 
H 4 HOH A 44 1044 12 HOH HOH . 
H 4 HOH A 45 1045 144 HOH HOH . 
H 4 HOH A 46 1046 82 HOH HOH . 
H 4 HOH A 47 1047 23 HOH HOH . 
H 4 HOH A 48 1048 97 HOH HOH . 
H 4 HOH A 49 1049 78 HOH HOH . 
H 4 HOH A 50 1050 113 HOH HOH . 
H 4 HOH A 51 1051 112 HOH HOH . 
H 4 HOH A 52 1052 1 HOH HOH . 
H 4 HOH A 53 1053 167 HOH HOH . 
H 4 HOH A 54 1054 143 HOH HOH . 
H 4 HOH A 55 1055 130 HOH HOH . 
H 4 HOH A 56 1056 108 HOH HOH . 
H 4 HOH A 57 1057 156 HOH HOH . 
H 4 HOH A 58 1058 168 HOH HOH . 
H 4 HOH A 59 1059 124 HOH HOH . 
H 4 HOH A 60 1060 123 HOH HOH . 
H 4 HOH A 61 1061 63 HOH HOH . 
H 4 HOH A 62 1062 83 HOH HOH . 
H 4 HOH A 63 1063 110 HOH HOH . 
H 4 HOH A 64 1064 131 HOH HOH . 
H 4 HOH A 65 1065 22 HOH HOH . 
H 4 HOH A 66 1066 55 HOH HOH . 
H 4 HOH A 67 1067 172 HOH HOH . 
H 4 HOH A 68 1068 175 HOH HOH . 
H 4 HOH A 69 1069 166 HOH HOH . 
H 4 HOH A 70 1070 76 HOH HOH . 
H 4 HOH A 71 1071 170 HOH HOH . 
H 4 HOH A 72 1072 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA TMO . . . C 2 -37.099 27.461 16.638 1 72.55 ? CAA TMO 901 B 1 
HETATM 2 N NAC TMO . . . C 2 -36.433 28.768 16.517 1 84.91 ? NAC TMO 901 B 1 
HETATM 3 C CAD TMO . . . C 2 -35.387 28.911 17.529 1 88.56 ? CAD TMO 901 B 1 
HETATM 4 C CAB TMO . . . C 2 -35.774 28.857 15.214 1 83.95 ? CAB TMO 901 B 1 
HETATM 5 O OAE TMO . . . C 2 -37.355 29.857 16.682 1 72.83 ? OAE TMO 901 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#