data_7ORE # _model_server_result.job_id BReFFICvR60MqJy215gXfQ _model_server_result.datetime_utc '2024-10-20 00:52:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ore # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7ORE # _exptl.entry_id 7ORE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.795 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(dimethylamino)-N-[(5Z)-9-[[4-[5-(4-fluorophenyl)-3-methyl-2-methylsulfanyl-imidazol-4-yl]pyridin-2-yl]amino]-11,12-dihydrobenzo[c][1,2]benzodiazocin-2-yl]butanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ORE _cell.length_a 52.868 _cell.length_b 71.059 _cell.length_c 107.456 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ORE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 117 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 154 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C32 _struct_conn.ptnr2_label_comp_id 0EI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 0EI _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.836 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C36 H37 F N8 O S' _chem_comp.formula_weight 648.795 _chem_comp.id 0EI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(dimethylamino)-N-[(5Z)-9-[[4-[5-(4-fluorophenyl)-3-methyl-2-methylsulfanyl-imidazol-4-yl]pyridin-2-yl]amino]-11,12-dihydrobenzo[c][1,2]benzodiazocin-2-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 N7 0EI sing 1 n n C33 N7 0EI sing 2 n n C33 C32 0EI sing 3 n n N7 C34 0EI sing 4 n n C32 C31 0EI sing 5 n n C31 C 0EI sing 6 n n C N 0EI sing 7 n n C O 0EI doub 8 n n N C1 0EI sing 9 n n C1 C2 0EI doub 10 n y C1 C14 0EI sing 11 n y C2 C3 0EI sing 12 n y C14 C13 0EI doub 13 n y C3 C4 0EI doub 14 n y C13 C4 0EI sing 15 n y C13 C12 0EI sing 16 n n C4 N1 0EI sing 17 n n C11 C12 0EI sing 18 n n C11 C10 0EI sing 19 n n N1 N2 0EI doub 20 n n C10 C5 0EI doub 21 n y C10 C9 0EI sing 22 n y N2 C5 0EI sing 23 n n C5 C6 0EI sing 24 n y S C27 0EI sing 25 n n S C26 0EI sing 26 n n C28 N5 0EI sing 27 n n C9 C8 0EI doub 28 n y C6 C7 0EI doub 29 n y N5 C26 0EI sing 30 n y N5 C18 0EI sing 31 n y C26 N4 0EI doub 32 n y C8 C7 0EI sing 33 n y C8 N3 0EI sing 34 n n C16 C17 0EI doub 35 n y C16 C15 0EI sing 36 n y C18 C17 0EI sing 37 n n C18 C19 0EI doub 38 n y N3 C15 0EI sing 39 n n N4 C19 0EI sing 40 n y C17 C29 0EI sing 41 n y C15 N6 0EI doub 42 n y C29 C30 0EI doub 43 n y N6 C30 0EI sing 44 n y C19 C20 0EI sing 45 n n C25 C20 0EI doub 46 n y C25 C24 0EI sing 47 n y C20 C21 0EI sing 48 n y C24 C23 0EI doub 49 n y C21 C22 0EI doub 50 n y C23 C22 0EI sing 51 n y C23 F 0EI sing 52 n n C2 H1 0EI sing 53 n n N3 H2 0EI sing 54 n n C6 H3 0EI sing 55 n n C22 H4 0EI sing 56 n n C21 H5 0EI sing 57 n n C24 H6 0EI sing 58 n n C25 H7 0EI sing 59 n n C27 H8 0EI sing 60 n n C27 H9 0EI sing 61 n n C27 H10 0EI sing 62 n n C28 H11 0EI sing 63 n n C28 H12 0EI sing 64 n n C28 H13 0EI sing 65 n n C16 H14 0EI sing 66 n n C29 H15 0EI sing 67 n n C30 H16 0EI sing 68 n n C7 H17 0EI sing 69 n n C9 H18 0EI sing 70 n n C11 H19 0EI sing 71 n n C11 H20 0EI sing 72 n n C12 H21 0EI sing 73 n n C12 H22 0EI sing 74 n n C3 H23 0EI sing 75 n n C14 H24 0EI sing 76 n n N H25 0EI sing 77 n n C31 H26 0EI sing 78 n n C31 H27 0EI sing 79 n n C32 H28 0EI sing 80 n n C32 H29 0EI sing 81 n n C33 H30 0EI sing 82 n n C33 H31 0EI sing 83 n n C35 H33 0EI sing 84 n n C35 H34 0EI sing 85 n n C35 H35 0EI sing 86 n n C34 H36 0EI sing 87 n n C34 H37 0EI sing 88 n n C34 H38 0EI sing 89 n n # _atom_sites.entry_id 7ORE _atom_sites.fract_transf_matrix[1][1] 0.018915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0EI A 1 501 1 0EI YYY . C 2 0EI A 1 502 1 0EI ZZZ . D 3 EDO A 1 503 2 EDO EDO . E 3 EDO A 1 504 3 EDO EDO . F 3 EDO A 1 505 4 EDO EDO . G 3 EDO A 1 506 5 EDO EDO . H 3 EDO A 1 507 6 EDO EDO . I 3 EDO A 1 508 7 EDO EDO . J 3 EDO A 1 509 8 EDO EDO . K 3 EDO A 1 510 9 EDO EDO . L 3 EDO A 1 511 10 EDO EDO . M 4 HOH A 1 601 31 HOH HOH . M 4 HOH A 2 602 34 HOH HOH . M 4 HOH A 3 603 67 HOH HOH . M 4 HOH A 4 604 30 HOH HOH . M 4 HOH A 5 605 68 HOH HOH . M 4 HOH A 6 606 60 HOH HOH . M 4 HOH A 7 607 46 HOH HOH . M 4 HOH A 8 608 43 HOH HOH . M 4 HOH A 9 609 20 HOH HOH . M 4 HOH A 10 610 16 HOH HOH . M 4 HOH A 11 611 65 HOH HOH . M 4 HOH A 12 612 38 HOH HOH . M 4 HOH A 13 613 42 HOH HOH . M 4 HOH A 14 614 29 HOH HOH . M 4 HOH A 15 615 37 HOH HOH . M 4 HOH A 16 616 32 HOH HOH . M 4 HOH A 17 617 24 HOH HOH . M 4 HOH A 18 618 63 HOH HOH . M 4 HOH A 19 619 17 HOH HOH . M 4 HOH A 20 620 27 HOH HOH . M 4 HOH A 21 621 61 HOH HOH . M 4 HOH A 22 622 47 HOH HOH . M 4 HOH A 23 623 19 HOH HOH . M 4 HOH A 24 624 41 HOH HOH . M 4 HOH A 25 625 11 HOH HOH . M 4 HOH A 26 626 1 HOH HOH . M 4 HOH A 27 627 69 HOH HOH . M 4 HOH A 28 628 15 HOH HOH . M 4 HOH A 29 629 35 HOH HOH . M 4 HOH A 30 630 4 HOH HOH . M 4 HOH A 31 631 18 HOH HOH . M 4 HOH A 32 632 71 HOH HOH . M 4 HOH A 33 633 2 HOH HOH . M 4 HOH A 34 634 23 HOH HOH . M 4 HOH A 35 635 28 HOH HOH . M 4 HOH A 36 636 59 HOH HOH . M 4 HOH A 37 637 21 HOH HOH . M 4 HOH A 38 638 36 HOH HOH . M 4 HOH A 39 639 8 HOH HOH . M 4 HOH A 40 640 48 HOH HOH . M 4 HOH A 41 641 7 HOH HOH . M 4 HOH A 42 642 25 HOH HOH . M 4 HOH A 43 643 12 HOH HOH . M 4 HOH A 44 644 64 HOH HOH . M 4 HOH A 45 645 52 HOH HOH . M 4 HOH A 46 646 9 HOH HOH . M 4 HOH A 47 647 33 HOH HOH . M 4 HOH A 48 648 6 HOH HOH . M 4 HOH A 49 649 66 HOH HOH . M 4 HOH A 50 650 45 HOH HOH . M 4 HOH A 51 651 5 HOH HOH . M 4 HOH A 52 652 70 HOH HOH . M 4 HOH A 53 653 62 HOH HOH . M 4 HOH A 54 654 58 HOH HOH . M 4 HOH A 55 655 39 HOH HOH . M 4 HOH A 56 656 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 0EI . A . B 2 -1.893 29.713 29.444 0.5 55.83 ? N1 0EI 501 A 1 HETATM 2 C C2 0EI . A . B 2 -3.189 28.519 26.182 0.5 55.05 ? C2 0EI 501 A 1 HETATM 3 N N3 0EI . A . B 2 4.158 29.641 32.343 0.5 39.68 ? N3 0EI 501 A 1 HETATM 4 C C4 0EI . A . B 2 -2.008 28.893 28.249 0.5 55.94 ? C4 0EI 501 A 1 HETATM 5 N N4 0EI . A . B 2 5.149 22.548 32.447 0.5 42.72 ? N4 0EI 501 A 1 HETATM 6 C C5 0EI . A . B 2 0.509 30.041 30.322 0.5 51.02 ? C5 0EI 501 A 1 HETATM 7 C C6 0EI . A . B 2 1.006 31.073 31.12 0.5 47.9 ? C6 0EI 501 A 1 HETATM 8 F F 0EI . A . B 2 9.361 23.392 37.202 0.5 41.27 ? F 0EI 501 A 1 HETATM 9 C C23 0EI . A . B 2 8.434 23.423 36.206 0.5 41.12 ? C23 0EI 501 A 1 HETATM 10 C C22 0EI . A . B 2 7.379 24.285 36.321 0.5 40.32 ? C22 0EI 501 A 1 HETATM 11 C C21 0EI . A . B 2 6.47 24.354 35.28 0.5 40.68 ? C21 0EI 501 A 1 HETATM 12 C C24 0EI . A . B 2 8.614 22.611 35.122 0.5 41.53 ? C24 0EI 501 A 1 HETATM 13 C C25 0EI . A . B 2 7.699 22.685 34.087 0.5 41.73 ? C25 0EI 501 A 1 HETATM 14 C C20 0EI . A . B 2 6.626 23.566 34.145 0.5 41.35 ? C20 0EI 501 A 1 HETATM 15 C C19 0EI . A . B 2 5.696 23.69 33.004 0.5 41.07 ? C19 0EI 501 A 1 HETATM 16 C C26 0EI . A . B 2 4.406 22.96 31.453 0.5 44.46 ? C26 0EI 501 A 1 HETATM 17 S S 0EI . A . B 2 3.504 21.946 30.351 0.5 45.3 ? S 0EI 501 A 1 HETATM 18 C C27 0EI . A . B 2 1.878 22.018 31.108 0.5 44.27 ? C27 0EI 501 A 1 HETATM 19 N N5 0EI . A . B 2 4.425 24.33 31.318 0.5 43.19 ? N5 0EI 501 A 1 HETATM 20 C C28 0EI . A . B 2 3.401 25.097 30.602 0.5 42.46 ? C28 0EI 501 A 1 HETATM 21 C C18 0EI . A . B 2 5.263 24.811 32.32 0.5 40.38 ? C18 0EI 501 A 1 HETATM 22 C C17 0EI . A . B 2 5.606 26.244 32.48 0.5 36.83 ? C17 0EI 501 A 1 HETATM 23 C C16 0EI . A . B 2 4.652 27.233 32.244 0.5 37.52 ? C16 0EI 501 A 1 HETATM 24 C C29 0EI . A . B 2 6.86 26.616 32.934 0.5 36.83 ? C29 0EI 501 A 1 HETATM 25 C C30 0EI . A . B 2 7.114 27.949 33.161 0.5 37.29 ? C30 0EI 501 A 1 HETATM 26 N N6 0EI . A . B 2 6.216 28.925 32.971 0.5 35.24 ? N6 0EI 501 A 1 HETATM 27 C C15 0EI . A . B 2 5.007 28.568 32.52 0.5 37.29 ? C15 0EI 501 A 1 HETATM 28 C C8 0EI . A . B 2 2.942 29.756 31.643 0.5 44.11 ? C8 0EI 501 A 1 HETATM 29 C C7 0EI . A . B 2 2.217 30.93 31.769 0.5 44.96 ? C7 0EI 501 A 1 HETATM 30 C C9 0EI . A . B 2 2.498 28.767 30.772 0.5 46.62 ? C9 0EI 501 A 1 HETATM 31 C C10 0EI . A . B 2 1.303 28.917 30.066 0.5 50.21 ? C10 0EI 501 A 1 HETATM 32 N N2 0EI . A . B 2 -0.937 30.159 30.18 0.5 55.01 ? N2 0EI 501 A 1 HETATM 33 C C11 0EI . A . B 2 1.022 27.945 28.945 0.5 52.16 ? C11 0EI 501 A 1 HETATM 34 C C12 0EI . A . B 2 -0.315 27.188 29.09 0.5 53.51 ? C12 0EI 501 A 1 HETATM 35 C C13 0EI . A . B 2 -1.316 27.69 28.079 0.5 54.85 ? C13 0EI 501 A 1 HETATM 36 C C3 0EI . A . B 2 -2.946 29.297 27.297 0.5 56.24 ? C3 0EI 501 A 1 HETATM 37 C C14 0EI . A . B 2 -1.561 26.926 26.939 0.5 55.28 ? C14 0EI 501 A 1 HETATM 38 C C1 0EI . A . B 2 -2.483 27.343 25.983 0.5 54.64 ? C1 0EI 501 A 1 HETATM 39 N N 0EI . A . B 2 -2.674 26.619 24.778 0.5 53.4 ? N 0EI 501 A 1 HETATM 40 C C 0EI . A . B 2 -2.068 25.472 24.391 0.5 52.99 ? C 0EI 501 A 1 HETATM 41 O O 0EI . A . B 2 -1.185 24.915 25.035 0.5 54.63 ? O 0EI 501 A 1 HETATM 42 C C31 0EI . A . B 2 -2.567 24.913 23.079 0.5 52.8 ? C31 0EI 501 A 1 HETATM 43 C C32 0EI . A . B 2 -1.456 24.335 22.196 0.5 51.17 ? C32 0EI 501 A 1 HETATM 44 C C33 0EI . A . B 2 -1.983 23.244 21.271 0.5 55.62 ? C33 0EI 501 A 1 HETATM 45 N N7 0EI . A . B 2 -2.589 22.105 21.978 0.5 57.92 ? N7 0EI 501 A 1 HETATM 46 C C35 0EI . A . B 2 -2.468 20.883 21.19 0.5 58.82 ? C35 0EI 501 A 1 HETATM 47 C C34 0EI . A . B 2 -3.993 22.365 22.28 0.5 59.2 ? C34 0EI 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #