data_7ORJ # _model_server_result.job_id 2MAvlDjz03OXSArwpF5bZg _model_server_result.datetime_utc '2024-12-26 20:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7orj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2302}' # _entry.id 7ORJ # _exptl.entry_id 7ORJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ORJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ORJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O3E GTG 1 P GTG 1 1_555 D P A 2 P A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? metalc ? metalc1 A SG CYS 2077 A CYS 2064 1_555 E ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A NE2 HIS 2182 A HIS 2169 1_555 E ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc3 A OD1 ASP 2191 A ASP 2178 1_555 E ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc4 A NE2 HIS 2195 A HIS 2182 1_555 E ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? hydrog 'A-U PAIR' hydrog1 B N6 A 1 H A 1 1_555 B O2 U 11 H U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N3 C 2 H C 2 1_555 B N1 G 10 H G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N4 C 2 H C 2 1_555 B O6 G 10 H G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O2 C 2 H C 2 1_555 B N2 G 10 H G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 G 3 H G 3 1_555 B N3 C 9 H C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N2 G 3 H G 3 1_555 B O2 C 9 H C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O6 G 3 H G 3 1_555 B N4 C 9 H C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 A 12 H A 12 1_555 C N3 U 14 T U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N6 A 12 H A 12 1_555 C O4 U 14 T U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 C 13 H C 13 1_555 C N1 G 13 T G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 C 13 H C 13 1_555 C O6 G 13 T G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 C 13 H C 13 1_555 C N2 G 13 T G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 C 14 H C 14 1_555 C N1 G 12 T G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 C 14 H C 14 1_555 C O6 G 12 T G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 C 14 H C 14 1_555 C N2 G 12 T G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 A 15 H A 15 1_555 C N3 U 11 T U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N6 A 15 H A 15 1_555 C O4 U 11 T U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 A 16 H A 16 1_555 C N3 U 10 T U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N6 A 16 H A 16 1_555 C O4 U 10 T U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 G 17 H G 17 1_555 C N3 C 9 T C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 G 17 H G 17 1_555 C O2 C 9 T C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 G 17 H G 17 1_555 C N4 C 9 T C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 7ORJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 2301 1 ZN ZN . F 6 ATP A 1 2302 2 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 6 161.814 164.208 154.764 1 40.87 ? PG ATP 2302 A 1 HETATM 2 O O1G ATP . . . F 6 162.118 163.911 153.318 1 40.87 ? O1G ATP 2302 A 1 HETATM 3 O O2G ATP . . . F 6 162.874 165.062 155.417 1 40.87 ? O2G ATP 2302 A 1 HETATM 4 O O3G ATP . . . F 6 161.491 162.968 155.56 1 40.87 ? O3G ATP 2302 A 1 HETATM 5 P PB ATP . . . F 6 159.117 165 153.912 1 40.87 ? PB ATP 2302 A 1 HETATM 6 O O1B ATP . . . F 6 159.458 165.155 152.469 1 40.87 ? O1B ATP 2302 A 1 HETATM 7 O O2B ATP . . . F 6 158.084 165.884 154.528 1 40.87 ? O2B ATP 2302 A 1 HETATM 8 O O3B ATP . . . F 6 160.472 165.104 154.757 1 40.87 ? O3B ATP 2302 A 1 HETATM 9 P PA ATP . . . F 6 158.047 162.384 153.205 1 40.87 ? PA ATP 2302 A 1 HETATM 10 O O1A ATP . . . F 6 157.373 161.361 154.054 1 40.87 ? O1A ATP 2302 A 1 HETATM 11 O O2A ATP . . . F 6 159.064 161.923 152.215 1 40.87 ? O2A ATP 2302 A 1 HETATM 12 O O3A ATP . . . F 6 158.719 163.473 154.169 1 40.87 ? O3A ATP 2302 A 1 HETATM 13 O O5' ATP . . . F 6 156.937 163.273 152.467 1 40.87 ? O5' ATP 2302 A 1 HETATM 14 C C5' ATP . . . F 6 155.912 162.596 151.701 1 40.87 ? C5' ATP 2302 A 1 HETATM 15 C C4' ATP . . . F 6 154.796 163.567 151.409 1 40.87 ? C4' ATP 2302 A 1 HETATM 16 O O4' ATP . . . F 6 153.672 162.852 150.829 1 40.87 ? O4' ATP 2302 A 1 HETATM 17 C C3' ATP . . . F 6 154.223 164.31 152.623 1 40.87 ? C3' ATP 2302 A 1 HETATM 18 O O3' ATP . . . F 6 154.875 165.553 152.85 1 40.87 ? O3' ATP 2302 A 1 HETATM 19 C C2' ATP . . . F 6 152.754 164.472 152.229 1 40.87 ? C2' ATP 2302 A 1 HETATM 20 O O2' ATP . . . F 6 152.57 165.53 151.314 1 40.87 ? O2' ATP 2302 A 1 HETATM 21 C C1' ATP . . . F 6 152.499 163.124 151.563 1 40.87 ? C1' ATP 2302 A 1 HETATM 22 N N9 ATP . . . F 6 152.248 161.985 152.459 1 40.87 ? N9 ATP 2302 A 1 HETATM 23 C C8 ATP . . . F 6 152.794 160.728 152.355 1 40.87 ? C8 ATP 2302 A 1 HETATM 24 N N7 ATP . . . F 6 152.371 159.912 153.291 1 40.87 ? N7 ATP 2302 A 1 HETATM 25 C C5 ATP . . . F 6 151.473 160.666 154.036 1 40.87 ? C5 ATP 2302 A 1 HETATM 26 C C6 ATP . . . F 6 150.681 160.362 155.159 1 40.87 ? C6 ATP 2302 A 1 HETATM 27 N N6 ATP . . . F 6 150.66 159.17 155.749 1 40.87 ? N6 ATP 2302 A 1 HETATM 28 N N1 ATP . . . F 6 149.89 161.346 155.649 1 40.87 ? N1 ATP 2302 A 1 HETATM 29 C C2 ATP . . . F 6 149.914 162.542 155.049 1 40.87 ? C2 ATP 2302 A 1 HETATM 30 N N3 ATP . . . F 6 150.618 162.941 153.993 1 40.87 ? N3 ATP 2302 A 1 HETATM 31 C C4 ATP . . . F 6 151.387 161.945 153.526 1 40.87 ? C4 ATP 2302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #