data_7ORV # _model_server_result.job_id cnI4vxaBccNrakp1kluCvQ _model_server_result.datetime_utc '2024-11-21 09:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7orv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7ORV # _exptl.entry_id 7ORV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ORV _cell.length_a 107.236 _cell.length_b 107.236 _cell.length_c 107.236 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ORV _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 68 A CYS 74 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 A SG CYS 71 A CYS 77 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 A NE2 HIS 77 A HIS 83 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 A SG CYS 84 A CYS 90 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 A SG CYS 111 A CYS 117 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc6 A SG CYS 114 A CYS 120 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc7 A SG CYS 122 A CYS 128 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc8 A SG CYS 124 A CYS 130 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7ORV _atom_sites.fract_transf_matrix[1][1] 0.009325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 201 ZN ZN . C 2 ZN A 1 202 202 ZN ZN . D 3 DMS A 1 203 203 DMS DMS . E 3 DMS A 1 204 204 DMS DMS . F 4 X4V A 1 205 205 X4V DRG . G 5 GOL A 1 206 206 GOL GOL . H 6 CL A 1 207 1 CL CL . I 6 CL A 1 208 2 CL CL . J 6 CL A 1 209 3 CL CL . K 7 HOH A 1 301 104 HOH HOH . K 7 HOH A 2 302 21 HOH HOH . K 7 HOH A 3 303 75 HOH HOH . K 7 HOH A 4 304 83 HOH HOH . K 7 HOH A 5 305 85 HOH HOH . K 7 HOH A 6 306 67 HOH HOH . K 7 HOH A 7 307 89 HOH HOH . K 7 HOH A 8 308 59 HOH HOH . K 7 HOH A 9 309 27 HOH HOH . K 7 HOH A 10 310 22 HOH HOH . K 7 HOH A 11 311 34 HOH HOH . K 7 HOH A 12 312 55 HOH HOH . K 7 HOH A 13 313 81 HOH HOH . K 7 HOH A 14 314 15 HOH HOH . K 7 HOH A 15 315 28 HOH HOH . K 7 HOH A 16 316 36 HOH HOH . K 7 HOH A 17 317 69 HOH HOH . K 7 HOH A 18 318 30 HOH HOH . K 7 HOH A 19 319 50 HOH HOH . K 7 HOH A 20 320 37 HOH HOH . K 7 HOH A 21 321 92 HOH HOH . K 7 HOH A 22 322 76 HOH HOH . K 7 HOH A 23 323 42 HOH HOH . K 7 HOH A 24 324 26 HOH HOH . K 7 HOH A 25 325 4 HOH HOH . K 7 HOH A 26 326 64 HOH HOH . K 7 HOH A 27 327 23 HOH HOH . K 7 HOH A 28 328 103 HOH HOH . K 7 HOH A 29 329 5 HOH HOH . K 7 HOH A 30 330 2 HOH HOH . K 7 HOH A 31 331 14 HOH HOH . K 7 HOH A 32 332 6 HOH HOH . K 7 HOH A 33 333 62 HOH HOH . K 7 HOH A 34 334 7 HOH HOH . K 7 HOH A 35 335 31 HOH HOH . K 7 HOH A 36 336 58 HOH HOH . K 7 HOH A 37 337 20 HOH HOH . K 7 HOH A 38 338 65 HOH HOH . K 7 HOH A 39 339 11 HOH HOH . K 7 HOH A 40 340 17 HOH HOH . K 7 HOH A 41 341 77 HOH HOH . K 7 HOH A 42 342 68 HOH HOH . K 7 HOH A 43 343 98 HOH HOH . K 7 HOH A 44 344 70 HOH HOH . K 7 HOH A 45 345 24 HOH HOH . K 7 HOH A 46 346 9 HOH HOH . K 7 HOH A 47 347 13 HOH HOH . K 7 HOH A 48 348 38 HOH HOH . K 7 HOH A 49 349 25 HOH HOH . K 7 HOH A 50 350 35 HOH HOH . K 7 HOH A 51 351 12 HOH HOH . K 7 HOH A 52 352 16 HOH HOH . K 7 HOH A 53 353 32 HOH HOH . K 7 HOH A 54 354 43 HOH HOH . K 7 HOH A 55 355 105 HOH HOH . K 7 HOH A 56 356 57 HOH HOH . K 7 HOH A 57 357 18 HOH HOH . K 7 HOH A 58 358 82 HOH HOH . K 7 HOH A 59 359 99 HOH HOH . K 7 HOH A 60 360 56 HOH HOH . K 7 HOH A 61 361 66 HOH HOH . K 7 HOH A 62 362 33 HOH HOH . K 7 HOH A 63 363 63 HOH HOH . K 7 HOH A 64 364 51 HOH HOH . K 7 HOH A 65 365 3 HOH HOH . K 7 HOH A 66 366 91 HOH HOH . K 7 HOH A 67 367 39 HOH HOH . K 7 HOH A 68 368 44 HOH HOH . K 7 HOH A 69 369 8 HOH HOH . K 7 HOH A 70 370 95 HOH HOH . K 7 HOH A 71 371 60 HOH HOH . K 7 HOH A 72 372 41 HOH HOH . K 7 HOH A 73 373 53 HOH HOH . K 7 HOH A 74 374 49 HOH HOH . K 7 HOH A 75 375 19 HOH HOH . K 7 HOH A 76 376 73 HOH HOH . K 7 HOH A 77 377 78 HOH HOH . K 7 HOH A 78 378 46 HOH HOH . K 7 HOH A 79 379 84 HOH HOH . K 7 HOH A 80 380 47 HOH HOH . K 7 HOH A 81 381 97 HOH HOH . K 7 HOH A 82 382 100 HOH HOH . K 7 HOH A 83 383 71 HOH HOH . K 7 HOH A 84 384 86 HOH HOH . K 7 HOH A 85 385 72 HOH HOH . K 7 HOH A 86 386 29 HOH HOH . K 7 HOH A 87 387 90 HOH HOH . K 7 HOH A 88 388 61 HOH HOH . K 7 HOH A 89 389 54 HOH HOH . K 7 HOH A 90 390 40 HOH HOH . K 7 HOH A 91 391 48 HOH HOH . K 7 HOH A 92 392 79 HOH HOH . K 7 HOH A 93 393 80 HOH HOH . K 7 HOH A 94 394 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 4.174 103.853 32.509 1 72.14 ? S DMS 203 A 1 HETATM 2 O O DMS . . . D 3 4.369 104.354 33.913 1 65 ? O DMS 203 A 1 HETATM 3 C C1 DMS . . . D 3 5.471 104.6 31.53 1 64.97 ? C1 DMS 203 A 1 HETATM 4 C C2 DMS . . . D 3 4.792 102.187 32.484 1 64.32 ? C2 DMS 203 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #