data_7OS4
#
_model_server_result.job_id            OwSMtGnM9QZHsy5EVz4DNw 
_model_server_result.datetime_utc      '2024-12-01 11:11:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7os4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":101}' 
#
_entry.id    7OS4 
#
_exptl.entry_id    7OS4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.279 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OS4 
_cell.length_a            74.374 
_cell.length_b            98.606 
_cell.length_c            206.61 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OS4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA octameric 8 author_and_software_defined_assembly 1 
PISA octameric 8 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J,M,N,Q,R 1 1,2 
C,D,G,H,K,L,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 74.374 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C ACE 1 E ACE 12 1_555 E N GLY 2 E GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 E NH2 ARG 6 E ARG 17 1_555 I C24 QVR . E QVR 101 1_555 A ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale3 F C ACE 1 F ACE 12 1_555 F N GLY 2 F GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 F NH2 ARG 6 F ARG 17 1_555 J C24 QVR . F QVR 101 1_555 A ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale5 G C ACE 1 G ACE 12 1_555 G N GLY 2 G GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 G NH1 ARG 6 G ARG 17 1_555 K C24 QVR . G QVR 101 1_555 A ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale7 H C ACE 1 H ACE 12 1_555 H N GLY 2 H GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 H NH1 ARG 6 H ARG 17 1_555 L C24 QVR . H QVR 101 1_555 A ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
#
_chem_comp.formula           'C12 H15 N5 O3' 
_chem_comp.formula_weight    277.279 
_chem_comp.id                QVR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N57 C55 QVR sing 283 n n 
C55 C50 QVR doub 284 n y 
C55 N54 QVR sing 285 n y 
N48 C50 QVR sing 286 n y 
N48 C49 QVR doub 287 n y 
C50 C51 QVR sing 288 n y 
N54 C53 QVR doub 289 n y 
C49 N47 QVR sing 290 n y 
C51 N47 QVR sing 291 n y 
C51 N52 QVR doub 292 n y 
C53 N52 QVR sing 293 n y 
N47 C38 QVR sing 294 n n 
C38 C39 QVR sing 295 n n 
C38 O37 QVR sing 296 n n 
C24 C28 QVR sing 297 n n 
C39 O41 QVR sing 298 n n 
C39 C40 QVR sing 299 n n 
C31 C28 QVR doub 300 e n 
C31 C36 QVR sing 301 n n 
O37 C36 QVR sing 302 n n 
C36 C40 QVR sing 303 n n 
C40 O42 QVR sing 304 n n 
C24 H1 QVR sing 305 n n 
C24 H30 QVR sing 306 n n 
C24 H29 QVR sing 307 n n 
C28 H28 QVR sing 308 n n 
C31 H31 QVR sing 309 n n 
C36 H61 QVR sing 310 n n 
C38 H62 QVR sing 311 n n 
C39 H44 QVR sing 312 n n 
C40 H43 QVR sing 313 n n 
C49 H58 QVR sing 314 n n 
C53 H56 QVR sing 315 n n 
N57 H59 QVR sing 316 n n 
N57 H60 QVR sing 317 n n 
O41 H46 QVR sing 318 n n 
O42 H45 QVR sing 319 n n 
#
_atom_sites.entry_id                     7OS4 
_atom_sites.fract_transf_matrix[1][1]    0.013446 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00484 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 QVR E 1 101 17 QVR URU . 
J 3 QVR F 1 101 17 QVR URU . 
K 3 QVR G 1 101 17 QVR URU . 
L 3 QVR H 1 101 17 QVR URU . 
M 4 HOH A 1 501 32 HOH HOH . 
M 4 HOH A 2 502 40 HOH HOH . 
M 4 HOH A 3 503 19 HOH HOH . 
M 4 HOH A 4 504 20 HOH HOH . 
M 4 HOH A 5 505 44 HOH HOH . 
M 4 HOH A 6 506 59 HOH HOH . 
M 4 HOH A 7 507 6 HOH HOH . 
M 4 HOH A 8 508 1 HOH HOH . 
M 4 HOH A 9 509 48 HOH HOH . 
M 4 HOH A 10 510 30 HOH HOH . 
M 4 HOH A 11 511 8 HOH HOH . 
M 4 HOH A 12 512 24 HOH HOH . 
M 4 HOH A 13 513 2 HOH HOH . 
M 4 HOH A 14 514 53 HOH HOH . 
M 4 HOH A 15 515 11 HOH HOH . 
M 4 HOH A 16 516 4 HOH HOH . 
M 4 HOH A 17 517 23 HOH HOH . 
M 4 HOH A 18 518 45 HOH HOH . 
M 4 HOH A 19 519 58 HOH HOH . 
M 4 HOH A 20 520 54 HOH HOH . 
M 4 HOH A 21 521 15 HOH HOH . 
M 4 HOH A 22 522 43 HOH HOH . 
M 4 HOH A 23 523 16 HOH HOH . 
N 4 HOH B 1 501 28 HOH HOH . 
N 4 HOH B 2 502 25 HOH HOH . 
N 4 HOH B 3 503 29 HOH HOH . 
N 4 HOH B 4 504 22 HOH HOH . 
N 4 HOH B 5 505 26 HOH HOH . 
N 4 HOH B 6 506 55 HOH HOH . 
N 4 HOH B 7 507 5 HOH HOH . 
N 4 HOH B 8 508 10 HOH HOH . 
N 4 HOH B 9 509 31 HOH HOH . 
N 4 HOH B 10 510 52 HOH HOH . 
N 4 HOH B 11 511 14 HOH HOH . 
N 4 HOH B 12 512 50 HOH HOH . 
O 4 HOH C 1 501 36 HOH HOH . 
O 4 HOH C 2 502 41 HOH HOH . 
O 4 HOH C 3 503 39 HOH HOH . 
O 4 HOH C 4 504 7 HOH HOH . 
O 4 HOH C 5 505 21 HOH HOH . 
O 4 HOH C 6 506 57 HOH HOH . 
O 4 HOH C 7 507 17 HOH HOH . 
O 4 HOH C 8 508 3 HOH HOH . 
O 4 HOH C 9 509 56 HOH HOH . 
O 4 HOH C 10 510 38 HOH HOH . 
O 4 HOH C 11 511 42 HOH HOH . 
O 4 HOH C 12 512 47 HOH HOH . 
O 4 HOH C 13 513 34 HOH HOH . 
P 4 HOH D 1 501 35 HOH HOH . 
P 4 HOH D 2 502 49 HOH HOH . 
P 4 HOH D 3 503 9 HOH HOH . 
P 4 HOH D 4 504 51 HOH HOH . 
P 4 HOH D 5 505 33 HOH HOH . 
P 4 HOH D 6 506 18 HOH HOH . 
P 4 HOH D 7 507 13 HOH HOH . 
P 4 HOH D 8 508 27 HOH HOH . 
P 4 HOH D 9 509 37 HOH HOH . 
P 4 HOH D 10 510 60 HOH HOH . 
Q 4 HOH E 1 201 12 HOH HOH . 
R 4 HOH F 1 201 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 QVR . . . J 3 23.643 20.833 121.772 1 57.07 ? C24 QVR 101 F 1 
HETATM 2 C C28 QVR . . . J 3 23.734 20.707 120.28 1 57.36 ? C28 QVR 101 F 1 
HETATM 3 C C31 QVR . . . J 3 24.243 21.616 119.471 1 57.57 ? C31 QVR 101 F 1 
HETATM 4 C C36 QVR . . . J 3 24.275 21.373 117.998 1 59.58 ? C36 QVR 101 F 1 
HETATM 5 C C38 QVR . . . J 3 24.26 23.188 116.519 1 59.26 ? C38 QVR 101 F 1 
HETATM 6 C C39 QVR . . . J 3 25.688 23.003 117.018 1 59.1 ? C39 QVR 101 F 1 
HETATM 7 C C40 QVR . . . J 3 25.663 21.517 117.37 1 58.67 ? C40 QVR 101 F 1 
HETATM 8 C C49 QVR . . . J 3 23.837 25.372 117.728 1 68.9 ? C49 QVR 101 F 1 
HETATM 9 C C50 QVR . . . J 3 22.848 26.514 116.239 1 61.85 ? C50 QVR 101 F 1 
HETATM 10 C C51 QVR . . . J 3 23.118 25.282 115.664 1 60.4 ? C51 QVR 101 F 1 
HETATM 11 C C53 QVR . . . J 3 22.195 25.87 113.753 1 67.26 ? C53 QVR 101 F 1 
HETATM 12 C C55 QVR . . . J 3 22.186 27.463 115.432 1 65.68 ? C55 QVR 101 F 1 
HETATM 13 N N47 QVR . . . J 3 23.757 24.558 116.639 1 61.29 ? N47 QVR 101 F 1 
HETATM 14 N N48 QVR . . . J 3 23.306 26.565 117.548 1 65.13 ? N48 QVR 101 F 1 
HETATM 15 N N52 QVR . . . J 3 22.817 24.896 114.422 1 61.64 ? N52 QVR 101 F 1 
HETATM 16 N N54 QVR . . . J 3 21.869 27.097 114.169 1 65.41 ? N54 QVR 101 F 1 
HETATM 17 N N57 QVR . . . J 3 21.857 28.69 115.841 1 63.63 ? N57 QVR 101 F 1 
HETATM 18 O O37 QVR . . . J 3 23.451 22.34 117.316 1 58.68 ? O37 QVR 101 F 1 
HETATM 19 O O41 QVR . . . J 3 26.632 23.314 116 1 60.17 ? O41 QVR 101 F 1 
HETATM 20 O O42 QVR . . . J 3 25.806 20.704 116.211 1 61.33 ? O42 QVR 101 F 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#