data_7OSE
#
_model_server_result.job_id            JoQTvtztJ-JBDPbvbWBckw 
_model_server_result.datetime_utc      '2025-02-27 01:32:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ose 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":603}' 
#
_entry.id    7OSE 
#
_exptl.entry_id    7OSE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              632.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OSE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OSE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 I FE HDD . A HDD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc2 A NE2 HIS 186 A HIS 186 1_555 G FE HEB . A HEB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc3 D NE2 HIS 19 D HIS 19 1_555 N FE HDD . D HDD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc4 D NE2 HIS 186 D HIS 186 1_555 L FE HEB . D HEB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O5' 
_chem_comp.formula_weight    632.487 
_chem_comp.id                HDD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HDD sing 190 n n 
FE NB HDD sing 191 n n 
FE NC HDD sing 192 n n 
FE ND HDD sing 193 n n 
CHA C1A HDD sing 194 n n 
CHA C4D HDD doub 195 n n 
CHA HHA HDD sing 196 n n 
CHB C4A HDD sing 197 n n 
CHB C1B HDD doub 198 n n 
CHB HHB HDD sing 199 n n 
CHC C4B HDD doub 200 n n 
CHC C1C HDD sing 201 n n 
CHC HHC HDD sing 202 n n 
CHD C4C HDD sing 203 n n 
CHD C1D HDD doub 204 n n 
CHD HHD HDD sing 205 n n 
NA C1A HDD sing 206 n y 
NA C4A HDD sing 207 n y 
C1A C2A HDD doub 208 n y 
C2A C3A HDD sing 209 n y 
C2A CAA HDD sing 210 n n 
C3A C4A HDD doub 211 n y 
C3A CMA HDD sing 212 n n 
CMA HMA1 HDD sing 213 n n 
CMA HMA2 HDD sing 214 n n 
CMA HMA3 HDD sing 215 n n 
CAA CBA HDD sing 216 n n 
CAA HAA1 HDD sing 217 n n 
CAA HAA2 HDD sing 218 n n 
CBA CGA HDD sing 219 n n 
CBA HBA1 HDD sing 220 n n 
CBA HBA2 HDD sing 221 n n 
CGA O1A HDD doub 222 n n 
CGA O2A HDD sing 223 n n 
O2A H2A HDD sing 224 n n 
NB C1B HDD sing 225 n y 
NB C4B HDD sing 226 n y 
C1B C2B HDD sing 227 n y 
C2B C3B HDD doub 228 n y 
C2B CMB HDD sing 229 n n 
C3B C4B HDD sing 230 n y 
C3B CAB HDD sing 231 n n 
CMB HMB1 HDD sing 232 n n 
CMB HMB2 HDD sing 233 n n 
CMB HMB3 HDD sing 234 n n 
CAB CBB HDD doub 235 n n 
CAB HAB HDD sing 236 n n 
CBB HBB1 HDD sing 237 n n 
CBB HBB2 HDD sing 238 n n 
NC C1C HDD sing 239 n y 
NC C4C HDD sing 240 n y 
C1C C2C HDD doub 241 n y 
C2C C3C HDD sing 242 n y 
C2C CMC HDD sing 243 n n 
C3C C4C HDD doub 244 n y 
C3C CAC HDD sing 245 n n 
CMC HMC1 HDD sing 246 n n 
CMC HMC2 HDD sing 247 n n 
CMC HMC3 HDD sing 248 n n 
CAC CBC HDD doub 249 n n 
CAC HAC HDD sing 250 n n 
CBC HBC1 HDD sing 251 n n 
CBC HBC2 HDD sing 252 n n 
ND C1D HDD sing 253 n n 
ND C4D HDD sing 254 n n 
C1D C2D HDD sing 255 n n 
C2D C3D HDD sing 256 n n 
C2D CMD HDD sing 257 n n 
C2D OND HDD sing 258 n n 
C3D C4D HDD sing 259 n n 
C3D CAD HDD sing 260 n n 
C3D O1D HDD sing 261 n n 
CMD HMD1 HDD sing 262 n n 
CMD HMD2 HDD sing 263 n n 
CMD HMD3 HDD sing 264 n n 
CAD CBD HDD sing 265 n n 
CAD HAD1 HDD sing 266 n n 
CAD HAD2 HDD sing 267 n n 
CBD CGD HDD sing 268 n n 
CBD HBD1 HDD sing 269 n n 
CBD HBD2 HDD sing 270 n n 
CGD O1D HDD sing 271 n n 
CGD O2D HDD doub 272 n n 
OND HND HDD sing 273 n n 
#
_atom_sites.entry_id                     7OSE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 HEB A 1 601 601 HEB HEB . 
H 4 HEB A 1 602 602 HEB HEB . 
I 5 HDD A 1 603 603 HDD HDD . 
J 6 0NI A 1 604 604 0NI 0NI . 
K 7 UQ8 B 1 401 702 UQ8 UQ8 . 
L 4 HEB D 1 601 601 HEB HEB . 
M 4 HEB D 1 602 602 HEB HEB . 
N 5 HDD D 1 603 603 HDD HDD . 
O 6 0NI D 1 604 604 0NI 0NI . 
P 7 UQ8 E 1 401 702 UQ8 UQ8 . 
Q 8 HOH A 1 701 701 HOH HOH . 
R 8 HOH D 1 701 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HDD . . . N 5 125.37 123.343 105.15 1 72.17 ? FE HDD 603 D 1 
HETATM 2 C CHA HDD . . . N 5 125.203 124.848 108.013 1 72.17 ? CHA HDD 603 D 1 
HETATM 3 C CHB HDD . . . N 5 125.087 126.15 103.377 1 72.17 ? CHB HDD 603 D 1 
HETATM 4 C CHC HDD . . . N 5 126.524 121.69 102.636 1 72.17 ? CHC HDD 603 D 1 
HETATM 5 C CHD HDD . . . N 5 123.387 120.952 106.184 1 72.17 ? CHD HDD 603 D 1 
HETATM 6 N NA HDD . . . N 5 125.173 125.166 105.61 1 72.17 ? NA HDD 603 D 1 
HETATM 7 C C1A HDD . . . N 5 125.132 125.671 106.876 1 72.17 ? C1A HDD 603 D 1 
HETATM 8 C C2A HDD . . . N 5 124.991 127.051 106.841 1 72.17 ? C2A HDD 603 D 1 
HETATM 9 C C3A HDD . . . N 5 124.961 127.407 105.525 1 72.17 ? C3A HDD 603 D 1 
HETATM 10 C C4A HDD . . . N 5 125.077 126.236 104.775 1 72.17 ? C4A HDD 603 D 1 
HETATM 11 C CMA HDD . . . N 5 124.824 128.8 104.977 1 72.17 ? CMA HDD 603 D 1 
HETATM 12 C CAA HDD . . . N 5 124.896 127.974 108.026 1 72.17 ? CAA HDD 603 D 1 
HETATM 13 C CBA HDD . . . N 5 123.437 128.082 108.47 1 72.17 ? CBA HDD 603 D 1 
HETATM 14 C CGA HDD . . . N 5 123.232 129.339 109.274 1 72.17 ? CGA HDD 603 D 1 
HETATM 15 O O1A HDD . . . N 5 122.271 130.04 109.064 1 72.17 ? O1A HDD 603 D 1 
HETATM 16 O O2A HDD . . . N 5 124.114 129.683 110.224 1 72.17 ? O2A HDD 603 D 1 
HETATM 17 N NB HDD . . . N 5 125.739 123.819 103.365 1 72.17 ? NB HDD 603 D 1 
HETATM 18 C C1B HDD . . . N 5 125.566 125.041 102.756 1 72.17 ? C1B HDD 603 D 1 
HETATM 19 C C2B HDD . . . N 5 125.956 125.005 101.397 1 72.17 ? C2B HDD 603 D 1 
HETATM 20 C C3B HDD . . . N 5 126.389 123.709 101.136 1 72.17 ? C3B HDD 603 D 1 
HETATM 21 C C4B HDD . . . N 5 126.244 122.979 102.416 1 72.17 ? C4B HDD 603 D 1 
HETATM 22 C CMB HDD . . . N 5 125.9 126.151 100.427 1 72.17 ? CMB HDD 603 D 1 
HETATM 23 C CAB HDD . . . N 5 126.895 123.146 99.876 1 72.17 ? CAB HDD 603 D 1 
HETATM 24 C CBB HDD . . . N 5 127.772 123.779 99.104 1 72.17 ? CBB HDD 603 D 1 
HETATM 25 N NC HDD . . . N 5 124.998 121.599 104.512 1 72.17 ? NC HDD 603 D 1 
HETATM 26 C C1C HDD . . . N 5 125.583 121.019 103.435 1 72.17 ? C1C HDD 603 D 1 
HETATM 27 C C2C HDD . . . N 5 125.096 119.733 103.24 1 72.17 ? C2C HDD 603 D 1 
HETATM 28 C C3C HDD . . . N 5 124.18 119.508 104.269 1 72.17 ? C3C HDD 603 D 1 
HETATM 29 C C4C HDD . . . N 5 124.145 120.694 105.034 1 72.17 ? C4C HDD 603 D 1 
HETATM 30 C CMC HDD . . . N 5 125.485 118.769 102.153 1 72.17 ? CMC HDD 603 D 1 
HETATM 31 C CAC HDD . . . N 5 123.399 118.282 104.482 1 72.17 ? CAC HDD 603 D 1 
HETATM 32 C CBC HDD . . . N 5 123.548 117.543 105.575 1 72.17 ? CBC HDD 603 D 1 
HETATM 33 N ND HDD . . . N 5 124.625 122.866 106.888 1 72.17 ? ND HDD 603 D 1 
HETATM 34 C C1D HDD . . . N 5 123.728 121.853 107.134 1 72.17 ? C1D HDD 603 D 1 
HETATM 35 C C2D HDD . . . N 5 122.986 122.177 108.424 1 72.17 ? C2D HDD 603 D 1 
HETATM 36 C C3D HDD . . . N 5 124.122 122.865 109.173 1 72.17 ? C3D HDD 603 D 1 
HETATM 37 C C4D HDD . . . N 5 124.906 123.529 108.043 1 72.17 ? C4D HDD 603 D 1 
HETATM 38 C CMD HDD . . . N 5 122.522 120.914 109.132 1 72.17 ? CMD HDD 603 D 1 
HETATM 39 C CAD HDD . . . N 5 125.011 121.892 109.95 1 72.17 ? CAD HDD 603 D 1 
HETATM 40 C CBD HDD . . . N 5 125.488 122.718 111.156 1 72.17 ? CBD HDD 603 D 1 
HETATM 41 C CGD HDD . . . N 5 124.61 123.944 111.144 1 72.17 ? CGD HDD 603 D 1 
HETATM 42 O O1D HDD . . . N 5 123.686 123.83 110.172 1 72.17 ? O1D HDD 603 D 1 
HETATM 43 O O2D HDD . . . N 5 124.725 124.894 111.888 1 72.17 ? O2D HDD 603 D 1 
HETATM 44 O OND HDD . . . N 5 121.913 123.073 108.19 1 72.17 ? OND HDD 603 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#