data_7OSK # _model_server_result.job_id Wl9WjtdmJjg7IBtw3nau1w _model_server_result.datetime_utc '2024-10-19 19:22:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7osk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 7OSK # _exptl.entry_id 7OSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OSK _cell.length_a 117.985 _cell.length_b 65.304 _cell.length_c 94.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1 B,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 301 A ASP 301 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A OD1 ASP 303 A ASP 303 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A O HIS 305 A HIS 305 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc4 A OD1 ASN 307 A ASN 307 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc5 A O ASN 370 A ASN 370 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 A OE1 GLU 373 A GLU 373 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc7 A OE2 GLU 373 A GLU 373 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 B OD1 ASP 301 B ASP 301 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc9 B OD1 ASP 303 B ASP 303 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc10 B O HIS 305 B HIS 305 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc11 B OD1 ASN 307 B ASN 307 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc12 B O ASN 370 B ASN 370 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc13 B OE1 GLU 373 B GLU 373 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc14 B OE2 GLU 373 B GLU 373 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 129 n n O1 HO1 HEZ sing 130 n n C1 C2 HEZ sing 131 n n C1 H11 HEZ sing 132 n n C1 H12 HEZ sing 133 n n C2 C3 HEZ sing 134 n n C2 H21 HEZ sing 135 n n C2 H22 HEZ sing 136 n n C3 C4 HEZ sing 137 n n C3 H31 HEZ sing 138 n n C3 H32 HEZ sing 139 n n C4 C5 HEZ sing 140 n n C4 H41 HEZ sing 141 n n C4 H42 HEZ sing 142 n n C5 C6 HEZ sing 143 n n C5 H51 HEZ sing 144 n n C5 H52 HEZ sing 145 n n C6 O6 HEZ sing 146 n n C6 H61 HEZ sing 147 n n C6 H62 HEZ sing 148 n n O6 HO6 HEZ sing 149 n n # _atom_sites.entry_id 7OSK _atom_sites.fract_transf_matrix[1][1] 0.008476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 501 2 CA CA . D 3 HEZ A 1 502 1 HEZ HEZ . E 3 HEZ A 1 503 3 HEZ HEZ . F 3 HEZ A 1 504 8 HEZ HEZ . G 4 CL A 1 505 1 CL CL . H 2 CA B 1 501 1 CA CA . I 3 HEZ B 1 502 4 HEZ HEZ . J 3 HEZ B 1 503 5 HEZ HEZ . K 3 HEZ B 1 504 6 HEZ HEZ . L 3 HEZ B 1 505 7 HEZ HEZ . M 4 CL B 1 506 2 CL CL . N 5 HOH A 1 601 10 HOH HOH . N 5 HOH A 2 602 58 HOH HOH . N 5 HOH A 3 603 42 HOH HOH . N 5 HOH A 4 604 11 HOH HOH . N 5 HOH A 5 605 7 HOH HOH . N 5 HOH A 6 606 3 HOH HOH . N 5 HOH A 7 607 38 HOH HOH . N 5 HOH A 8 608 28 HOH HOH . N 5 HOH A 9 609 46 HOH HOH . N 5 HOH A 10 610 24 HOH HOH . N 5 HOH A 11 611 50 HOH HOH . N 5 HOH A 12 612 40 HOH HOH . N 5 HOH A 13 613 33 HOH HOH . N 5 HOH A 14 614 14 HOH HOH . N 5 HOH A 15 615 43 HOH HOH . N 5 HOH A 16 616 54 HOH HOH . N 5 HOH A 17 617 20 HOH HOH . N 5 HOH A 18 618 55 HOH HOH . N 5 HOH A 19 619 35 HOH HOH . N 5 HOH A 20 620 5 HOH HOH . N 5 HOH A 21 621 47 HOH HOH . N 5 HOH A 22 622 26 HOH HOH . N 5 HOH A 23 623 29 HOH HOH . N 5 HOH A 24 624 17 HOH HOH . N 5 HOH A 25 625 71 HOH HOH . N 5 HOH A 26 626 52 HOH HOH . N 5 HOH A 27 627 22 HOH HOH . N 5 HOH A 28 628 66 HOH HOH . N 5 HOH A 29 629 1 HOH HOH . N 5 HOH A 30 630 32 HOH HOH . N 5 HOH A 31 631 62 HOH HOH . N 5 HOH A 32 632 65 HOH HOH . N 5 HOH A 33 633 72 HOH HOH . N 5 HOH A 34 634 73 HOH HOH . N 5 HOH A 35 635 76 HOH HOH . N 5 HOH A 36 636 64 HOH HOH . N 5 HOH A 37 637 59 HOH HOH . N 5 HOH A 38 638 74 HOH HOH . N 5 HOH A 39 639 75 HOH HOH . O 5 HOH B 1 601 51 HOH HOH . O 5 HOH B 2 602 44 HOH HOH . O 5 HOH B 3 603 48 HOH HOH . O 5 HOH B 4 604 8 HOH HOH . O 5 HOH B 5 605 12 HOH HOH . O 5 HOH B 6 606 9 HOH HOH . O 5 HOH B 7 607 27 HOH HOH . O 5 HOH B 8 608 25 HOH HOH . O 5 HOH B 9 609 36 HOH HOH . O 5 HOH B 10 610 2 HOH HOH . O 5 HOH B 11 611 37 HOH HOH . O 5 HOH B 12 612 23 HOH HOH . O 5 HOH B 13 613 4 HOH HOH . O 5 HOH B 14 614 21 HOH HOH . O 5 HOH B 15 615 19 HOH HOH . O 5 HOH B 16 616 70 HOH HOH . O 5 HOH B 17 617 57 HOH HOH . O 5 HOH B 18 618 13 HOH HOH . O 5 HOH B 19 619 45 HOH HOH . O 5 HOH B 20 620 39 HOH HOH . O 5 HOH B 21 621 53 HOH HOH . O 5 HOH B 22 622 41 HOH HOH . O 5 HOH B 23 623 31 HOH HOH . O 5 HOH B 24 624 18 HOH HOH . O 5 HOH B 25 625 61 HOH HOH . O 5 HOH B 26 626 49 HOH HOH . O 5 HOH B 27 627 6 HOH HOH . O 5 HOH B 28 628 34 HOH HOH . O 5 HOH B 29 629 30 HOH HOH . O 5 HOH B 30 630 77 HOH HOH . O 5 HOH B 31 631 56 HOH HOH . O 5 HOH B 32 632 63 HOH HOH . O 5 HOH B 33 633 68 HOH HOH . O 5 HOH B 34 634 67 HOH HOH . O 5 HOH B 35 635 79 HOH HOH . O 5 HOH B 36 636 78 HOH HOH . O 5 HOH B 37 637 60 HOH HOH . O 5 HOH B 38 638 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . I 3 24.301 18.672 45.328 1 29.58 ? O1 HEZ 502 B 1 HETATM 2 C C1 HEZ . . . I 3 24.698 19.795 46.086 1 27.7 ? C1 HEZ 502 B 1 HETATM 3 C C2 HEZ . . . I 3 23.466 20.536 46.566 1 25.54 ? C2 HEZ 502 B 1 HETATM 4 C C3 HEZ . . . I 3 23.454 21.957 46.042 1 30.07 ? C3 HEZ 502 B 1 HETATM 5 C C4 HEZ . . . I 3 22.443 22.788 46.807 1 28.02 ? C4 HEZ 502 B 1 HETATM 6 C C5 HEZ . . . I 3 22.974 24.194 47.002 1 28.78 ? C5 HEZ 502 B 1 HETATM 7 C C6 HEZ . . . I 3 23.274 24.451 48.465 1 28.87 ? C6 HEZ 502 B 1 HETATM 8 O O6 HEZ . . . I 3 24.348 25.36 48.57 1 30.68 ? O6 HEZ 502 B 1 HETATM 9 H HO1 HEZ . . . I 3 24.237 17.964 45.859 1 35.5 ? HO1 HEZ 502 B 1 HETATM 10 H H11 HEZ . . . I 3 25.239 20.389 45.531 1 33.24 ? H11 HEZ 502 B 1 HETATM 11 H H12 HEZ . . . I 3 25.221 19.501 46.855 1 33.24 ? H12 HEZ 502 B 1 HETATM 12 H H21 HEZ . . . I 3 22.668 20.071 46.251 1 30.64 ? H21 HEZ 502 B 1 HETATM 13 H H22 HEZ . . . I 3 23.463 20.554 47.542 1 30.64 ? H22 HEZ 502 B 1 HETATM 14 H H31 HEZ . . . I 3 24.342 22.348 46.15 1 36.08 ? H31 HEZ 502 B 1 HETATM 15 H H32 HEZ . . . I 3 23.216 21.95 45.096 1 36.08 ? H32 HEZ 502 B 1 HETATM 16 H H41 HEZ . . . I 3 22.28 22.38 47.678 1 33.62 ? H41 HEZ 502 B 1 HETATM 17 H H42 HEZ . . . I 3 21.607 22.825 46.305 1 33.62 ? H42 HEZ 502 B 1 HETATM 18 H H51 HEZ . . . I 3 22.307 24.836 46.693 1 34.54 ? H51 HEZ 502 B 1 HETATM 19 H H52 HEZ . . . I 3 23.792 24.305 46.482 1 34.54 ? H52 HEZ 502 B 1 HETATM 20 H H61 HEZ . . . I 3 23.514 23.611 48.901 1 34.64 ? H61 HEZ 502 B 1 HETATM 21 H H62 HEZ . . . I 3 22.484 24.828 48.898 1 34.64 ? H62 HEZ 502 B 1 HETATM 22 H HO6 HEZ . . . I 3 24.444 25.608 49.417 1 36.82 ? HO6 HEZ 502 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #