data_7OT3 # _model_server_result.job_id RaQSK3ILA-oTDQLIjbUo5A _model_server_result.datetime_utc '2024-10-19 14:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ot3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1602}' # _entry.id 7OT3 # _exptl.entry_id 7OT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.263 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2-chlorophenyl)methyl]-3-[(2-chlorophenyl)methylamino]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.88 _cell.angle_gamma 90 _cell.entry_id 7OT3 _cell.length_a 71.871 _cell.length_b 92.422 _cell.length_c 87.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 72 A GLY 1072 1_555 G SR SR . A SR 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc2 A O ASP 96 A ASP 1096 1_555 H SR SR . A SR 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc3 A OD1 ASP 96 A ASP 1096 1_555 H SR SR . A SR 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc4 A O ASP 220 A ASP 1220 1_555 F SR SR . A SR 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc5 A SG CYS 448 A CYS 1448 1_555 E ZN ZN . A ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc6 A SG CYS 453 A CYS 1453 1_555 E ZN ZN . A ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc7 A SG CYS 495 A CYS 1495 1_555 E ZN ZN . A ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc8 A SG CYS 497 A CYS 1497 1_555 E ZN ZN . A ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc9 F SR SR . A SR 1604 1_555 M O HOH . A HOH 1704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc10 F SR SR . A SR 1604 1_555 M O HOH . A HOH 1713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc11 G SR SR . A SR 1605 1_555 M O HOH . A HOH 1708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc12 G SR SR . A SR 1605 1_555 M O HOH . A HOH 1712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc13 G SR SR . A SR 1605 1_555 M O HOH . A HOH 1714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc14 H SR SR . A SR 1606 1_555 M O HOH . A HOH 1711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc15 B OD1 ASP 96 B ASP 1096 1_555 L SR SR . B SR 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc16 B SG CYS 448 B CYS 1448 1_555 K ZN ZN . B ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc17 B SG CYS 453 B CYS 1453 1_555 K ZN ZN . B ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc18 B SG CYS 495 B CYS 1495 1_555 K ZN ZN . B ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc19 B SG CYS 497 B CYS 1497 1_555 K ZN ZN . B ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? # _chem_comp.formula 'C19 H16 Cl2 N4 O' _chem_comp.formula_weight 387.263 _chem_comp.id 0W4 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2-chlorophenyl)methyl]-3-[(2-chlorophenyl)methylamino]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 0W4 doub 1 n y C25 C20 0W4 sing 2 n y C24 C23 0W4 sing 3 n y C19 C20 0W4 sing 4 n n C19 N9 0W4 sing 5 n n C16 C15 0W4 doub 6 n y C16 C17 0W4 sing 7 n y C20 C21 0W4 doub 8 n y N9 C7 0W4 sing 9 n n C15 C14 0W4 sing 10 n y C23 C22 0W4 doub 11 n y C17 C12 0W4 doub 12 n y C7 O8 0W4 doub 13 n n C7 C2 0W4 sing 14 n n C21 C22 0W4 sing 15 n y C21 CL2 0W4 sing 16 n n N1 C2 0W4 doub 17 n y N1 C6 0W4 sing 18 n y C2 C3 0W4 sing 19 n y C14 C13 0W4 doub 20 n y C12 C13 0W4 sing 21 n y C12 C11 0W4 sing 22 n n N10 C3 0W4 sing 23 n n N10 C11 0W4 sing 24 n n C6 C5 0W4 doub 25 n y C3 N4 0W4 doub 26 n y C13 CL1 0W4 sing 27 n n C5 N4 0W4 sing 28 n y C19 H1 0W4 sing 29 n n C19 H2 0W4 sing 30 n n C6 H3 0W4 sing 31 n n C5 H4 0W4 sing 32 n n C11 H5 0W4 sing 33 n n C11 H6 0W4 sing 34 n n C17 H7 0W4 sing 35 n n C16 H8 0W4 sing 36 n n C15 H9 0W4 sing 37 n n C14 H10 0W4 sing 38 n n C22 H11 0W4 sing 39 n n C23 H12 0W4 sing 40 n n C24 H13 0W4 sing 41 n n C25 H14 0W4 sing 42 n n N10 H15 0W4 sing 43 n n N9 H16 0W4 sing 44 n n # _atom_sites.entry_id 7OT3 _atom_sites.fract_transf_matrix[1][1] 0.013914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004759 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PRO A 1 1601 1601 PRO PRO . D 3 0W4 A 1 1602 1602 0W4 L52 . E 4 ZN A 1 1603 3 ZN ZN . F 5 SR A 1 1604 2 SR SR . G 5 SR A 1 1605 3 SR SR . H 5 SR A 1 1606 4 SR SR . I 2 PRO B 1 1601 1601 PRO PRO . J 3 0W4 B 1 1602 1602 0W4 L52 . K 4 ZN B 1 1603 2 ZN ZN . L 5 SR B 1 1604 5 SR SR . M 6 HOH A 1 1701 1 HOH HOH . M 6 HOH A 2 1702 33 HOH HOH . M 6 HOH A 3 1703 5 HOH HOH . M 6 HOH A 4 1704 32 HOH HOH . M 6 HOH A 5 1705 4 HOH HOH . M 6 HOH A 6 1706 7 HOH HOH . M 6 HOH A 7 1707 23 HOH HOH . M 6 HOH A 8 1708 37 HOH HOH . M 6 HOH A 9 1709 39 HOH HOH . M 6 HOH A 10 1710 25 HOH HOH . M 6 HOH A 11 1711 9 HOH HOH . M 6 HOH A 12 1712 38 HOH HOH . M 6 HOH A 13 1713 31 HOH HOH . M 6 HOH A 14 1714 34 HOH HOH . M 6 HOH A 15 1715 35 HOH HOH . M 6 HOH A 16 1716 10 HOH HOH . N 6 HOH B 1 1701 16 HOH HOH . N 6 HOH B 2 1702 3 HOH HOH . N 6 HOH B 3 1703 19 HOH HOH . N 6 HOH B 4 1704 30 HOH HOH . N 6 HOH B 5 1705 2 HOH HOH . N 6 HOH B 6 1706 22 HOH HOH . N 6 HOH B 7 1707 29 HOH HOH . N 6 HOH B 8 1708 27 HOH HOH . N 6 HOH B 9 1709 28 HOH HOH . N 6 HOH B 10 1710 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 0W4 . . . J 3 19.59 25.694 4.104 1 129.88 ? C19 0W4 1602 B 1 HETATM 2 C C20 0W4 . . . J 3 18.768 25.97 2.868 1 134.8 ? C20 0W4 1602 B 1 HETATM 3 N N1 0W4 . . . J 3 17.901 22.528 6.095 1 101.48 ? N1 0W4 1602 B 1 HETATM 4 C C2 0W4 . . . J 3 19.238 22.571 6.2 1 114.13 ? C2 0W4 1602 B 1 HETATM 5 C C7 0W4 . . . J 3 19.912 23.704 5.483 1 115.68 ? C7 0W4 1602 B 1 HETATM 6 C C6 0W4 . . . J 3 17.29 21.519 6.731 1 98.61 ? C6 0W4 1602 B 1 HETATM 7 C C5 0W4 . . . J 3 17.991 20.571 7.454 1 102.43 ? C5 0W4 1602 B 1 HETATM 8 C C3 0W4 . . . J 3 19.945 21.611 6.934 1 110.1 ? C3 0W4 1602 B 1 HETATM 9 C C11 0W4 . . . J 3 22.133 20.554 7.316 1 93.5 ? C11 0W4 1602 B 1 HETATM 10 C C12 0W4 . . . J 3 23.044 20.768 8.5 1 89.07 ? C12 0W4 1602 B 1 HETATM 11 C C17 0W4 . . . J 3 23.322 22.046 8.982 1 94.7 ? C17 0W4 1602 B 1 HETATM 12 C C16 0W4 . . . J 3 24.155 22.238 10.073 1 98.94 ? C16 0W4 1602 B 1 HETATM 13 C C15 0W4 . . . J 3 24.726 21.157 10.705 1 97.81 ? C15 0W4 1602 B 1 HETATM 14 C C14 0W4 . . . J 3 24.472 19.875 10.251 1 90.78 ? C14 0W4 1602 B 1 HETATM 15 C C13 0W4 . . . J 3 23.639 19.697 9.161 1 90.49 ? C13 0W4 1602 B 1 HETATM 16 C C21 0W4 . . . J 3 19.068 25.372 1.648 1 138.13 ? C21 0W4 1602 B 1 HETATM 17 C C22 0W4 . . . J 3 18.325 25.614 0.506 1 129.42 ? C22 0W4 1602 B 1 HETATM 18 C C23 0W4 . . . J 3 17.246 26.477 0.573 1 135.02 ? C23 0W4 1602 B 1 HETATM 19 C C24 0W4 . . . J 3 16.922 27.084 1.765 1 131.06 ? C24 0W4 1602 B 1 HETATM 20 C C25 0W4 . . . J 3 17.675 26.835 2.9 1 134.76 ? C25 0W4 1602 B 1 HETATM 21 N N10 0W4 . . . J 3 21.284 21.696 7.023 1 102.35 ? N10 0W4 1602 B 1 HETATM 22 N N4 0W4 . . . J 3 19.327 20.601 7.567 1 109.57 ? N4 0W4 1602 B 1 HETATM 23 N N9 0W4 . . . J 3 19.091 24.571 4.884 1 122.25 ? N9 0W4 1602 B 1 HETATM 24 O O8 0W4 . . . J 3 21.135 23.812 5.458 1 100.28 ? O8 0W4 1602 B 1 HETATM 25 CL CL1 0W4 . . . J 3 23.339 18.078 8.617 1 108.67 ? CL1 0W4 1602 B 1 HETATM 26 CL CL2 0W4 . . . J 3 20.415 24.285 1.532 1 144.62 ? CL2 0W4 1602 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #