data_7OUL
#
_model_server_result.job_id            s0pLfwXxPCUGWfFVhSAKBw 
_model_server_result.datetime_utc      '2024-11-05 10:30:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7oul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1104}' 
#
_entry.id    7OUL 
#
_exptl.entry_id    7OUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.561 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(3-chloranyl-5-iodanyl-pyridin-2-yl)piperazine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OUL 
_cell.length_a            146.408 
_cell.length_b            160.012 
_cell.length_c            245.478 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H11 Cl I N3' 
_chem_comp.formula_weight    323.561 
_chem_comp.id                1KE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(3-chloranyl-5-iodanyl-pyridin-2-yl)piperazine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     BDM88832 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
I1 C11 1KE sing 1 n n 
C12 N13 1KE doub 2 n y 
C12 C11 1KE sing 3 n y 
N13 C8 1KE sing 4 n y 
C11 C10 1KE doub 5 n y 
C4 N3 1KE sing 6 n n 
C4 C5 1KE sing 7 n n 
C8 N3 1KE sing 8 n n 
C8 C9 1KE doub 9 n y 
C10 C9 1KE sing 10 n y 
N3 C2 1KE sing 11 n n 
C9 CL1 1KE sing 12 n n 
C5 N1 1KE sing 13 n n 
C2 C1 1KE sing 14 n n 
N1 C1 1KE sing 15 n n 
C10 H1 1KE sing 16 n n 
C12 H2 1KE sing 17 n n 
C2 H3 1KE sing 18 n n 
C2 H4 1KE sing 19 n n 
C1 H5 1KE sing 20 n n 
C1 H6 1KE sing 21 n n 
C4 H7 1KE sing 22 n n 
C4 H8 1KE sing 23 n n 
C5 H9 1KE sing 24 n n 
C5 H10 1KE sing 25 n n 
N1 H11 1KE sing 26 n n 
#
_atom_sites.entry_id                     7OUL 
_atom_sites.fract_transf_matrix[1][1]    0.00683 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004074 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 LMT A 1 1101 1101 LMT LMT . 
G 3 LMT A 1 1102 1201 LMT LMT . 
H 4 EDO A 1 1103 1401 EDO EDO . 
I 5 1KE A 1 1104 1501 1KE 832 . 
J 6 D12 A 1 1105 1701 D12 D12 . 
K 3 LMT A 1 1106 1801 LMT LMT . 
L 7 SO4 A 1 1107 2 SO4 SO4 . 
M 4 EDO B 1 1301 1301 EDO EDO . 
N 3 LMT B 1 1302 1101 LMT LMT . 
O 3 LMT B 1 1303 1201 LMT LMT . 
P 7 SO4 B 1 1304 1301 SO4 SO4 . 
Q 8 GOL B 1 1305 1401 GOL GOL . 
R 4 EDO B 1 1306 1501 EDO EDO . 
S 4 EDO B 1 1307 1601 EDO EDO . 
T 4 EDO B 1 1308 1701 EDO EDO . 
U 4 EDO B 1 1309 1801 EDO EDO . 
V 4 EDO C 1 1601 1601 EDO EDO . 
W 9 LPX C 1 1602 1101 LPX LPX . 
X 3 LMT C 1 1603 1201 LMT LMT . 
Y 10 DDQ C 1 1604 1301 DDQ DDQ . 
Z 11 C14 C 1 1605 1401 C14 C14 . 
AA 8 GOL C 1 1606 1501 GOL GOL . 
BA 4 EDO C 1 1607 1601 EDO EDO . 
CA 7 SO4 C 1 1608 4 SO4 SO4 . 
DA 4 EDO D 1 201 201 EDO EDO . 
EA 4 EDO D 1 202 301 EDO EDO . 
FA 4 EDO E 1 201 201 EDO EDO . 
GA 12 HOH A 1 1201 86 HOH HOH . 
GA 12 HOH A 2 1202 103 HOH HOH . 
GA 12 HOH A 3 1203 107 HOH HOH . 
GA 12 HOH A 4 1204 102 HOH HOH . 
GA 12 HOH A 5 1205 19 HOH HOH . 
GA 12 HOH A 6 1206 106 HOH HOH . 
GA 12 HOH A 7 1207 135 HOH HOH . 
GA 12 HOH A 8 1208 59 HOH HOH . 
GA 12 HOH A 9 1209 97 HOH HOH . 
GA 12 HOH A 10 1210 142 HOH HOH . 
GA 12 HOH A 11 1211 67 HOH HOH . 
GA 12 HOH A 12 1212 31 HOH HOH . 
GA 12 HOH A 13 1213 172 HOH HOH . 
GA 12 HOH A 14 1214 84 HOH HOH . 
GA 12 HOH A 15 1215 48 HOH HOH . 
GA 12 HOH A 16 1216 39 HOH HOH . 
GA 12 HOH A 17 1217 88 HOH HOH . 
GA 12 HOH A 18 1218 132 HOH HOH . 
GA 12 HOH A 19 1219 104 HOH HOH . 
GA 12 HOH A 20 1220 87 HOH HOH . 
GA 12 HOH A 21 1221 14 HOH HOH . 
GA 12 HOH A 22 1222 133 HOH HOH . 
GA 12 HOH A 23 1223 85 HOH HOH . 
GA 12 HOH A 24 1224 18 HOH HOH . 
GA 12 HOH A 25 1225 130 HOH HOH . 
GA 12 HOH A 26 1226 33 HOH HOH . 
GA 12 HOH A 27 1227 66 HOH HOH . 
GA 12 HOH A 28 1228 22 HOH HOH . 
GA 12 HOH A 29 1229 57 HOH HOH . 
GA 12 HOH A 30 1230 167 HOH HOH . 
GA 12 HOH A 31 1231 53 HOH HOH . 
GA 12 HOH A 32 1232 134 HOH HOH . 
GA 12 HOH A 33 1233 91 HOH HOH . 
GA 12 HOH A 34 1234 139 HOH HOH . 
GA 12 HOH A 35 1235 34 HOH HOH . 
GA 12 HOH A 36 1236 38 HOH HOH . 
GA 12 HOH A 37 1237 50 HOH HOH . 
GA 12 HOH A 38 1238 140 HOH HOH . 
GA 12 HOH A 39 1239 138 HOH HOH . 
GA 12 HOH A 40 1240 92 HOH HOH . 
GA 12 HOH A 41 1241 77 HOH HOH . 
GA 12 HOH A 42 1242 20 HOH HOH . 
GA 12 HOH A 43 1243 41 HOH HOH . 
GA 12 HOH A 44 1244 12 HOH HOH . 
GA 12 HOH A 45 1245 90 HOH HOH . 
GA 12 HOH A 46 1246 115 HOH HOH . 
GA 12 HOH A 47 1247 68 HOH HOH . 
GA 12 HOH A 48 1248 136 HOH HOH . 
GA 12 HOH A 49 1249 98 HOH HOH . 
GA 12 HOH A 50 1250 170 HOH HOH . 
GA 12 HOH A 51 1251 58 HOH HOH . 
GA 12 HOH A 52 1252 185 HOH HOH . 
GA 12 HOH A 53 1253 96 HOH HOH . 
GA 12 HOH A 54 1254 118 HOH HOH . 
GA 12 HOH A 55 1255 109 HOH HOH . 
GA 12 HOH A 56 1256 171 HOH HOH . 
GA 12 HOH A 57 1257 169 HOH HOH . 
GA 12 HOH A 58 1258 137 HOH HOH . 
GA 12 HOH A 59 1259 89 HOH HOH . 
GA 12 HOH A 60 1260 186 HOH HOH . 
GA 12 HOH A 61 1261 93 HOH HOH . 
GA 12 HOH A 62 1262 95 HOH HOH . 
GA 12 HOH A 63 1263 94 HOH HOH . 
HA 12 HOH B 1 1401 25 HOH HOH . 
HA 12 HOH B 2 1402 64 HOH HOH . 
HA 12 HOH B 3 1403 158 HOH HOH . 
HA 12 HOH B 4 1404 69 HOH HOH . 
HA 12 HOH B 5 1405 36 HOH HOH . 
HA 12 HOH B 6 1406 71 HOH HOH . 
HA 12 HOH B 7 1407 150 HOH HOH . 
HA 12 HOH B 8 1408 65 HOH HOH . 
HA 12 HOH B 9 1409 63 HOH HOH . 
HA 12 HOH B 10 1410 157 HOH HOH . 
HA 12 HOH B 11 1411 159 HOH HOH . 
HA 12 HOH B 12 1412 82 HOH HOH . 
HA 12 HOH B 13 1413 152 HOH HOH . 
HA 12 HOH B 14 1414 116 HOH HOH . 
HA 12 HOH B 15 1415 42 HOH HOH . 
HA 12 HOH B 16 1416 182 HOH HOH . 
HA 12 HOH B 17 1417 17 HOH HOH . 
HA 12 HOH B 18 1418 155 HOH HOH . 
HA 12 HOH B 19 1419 162 HOH HOH . 
HA 12 HOH B 20 1420 163 HOH HOH . 
HA 12 HOH B 21 1421 7 HOH HOH . 
HA 12 HOH B 22 1422 10 HOH HOH . 
HA 12 HOH B 23 1423 27 HOH HOH . 
HA 12 HOH B 24 1424 28 HOH HOH . 
HA 12 HOH B 25 1425 11 HOH HOH . 
HA 12 HOH B 26 1426 26 HOH HOH . 
HA 12 HOH B 27 1427 70 HOH HOH . 
HA 12 HOH B 28 1428 183 HOH HOH . 
HA 12 HOH B 29 1429 16 HOH HOH . 
HA 12 HOH B 30 1430 13 HOH HOH . 
HA 12 HOH B 31 1431 8 HOH HOH . 
HA 12 HOH B 32 1432 148 HOH HOH . 
HA 12 HOH B 33 1433 151 HOH HOH . 
HA 12 HOH B 34 1434 79 HOH HOH . 
HA 12 HOH B 35 1435 149 HOH HOH . 
HA 12 HOH B 36 1436 143 HOH HOH . 
HA 12 HOH B 37 1437 160 HOH HOH . 
HA 12 HOH B 38 1438 76 HOH HOH . 
HA 12 HOH B 39 1439 156 HOH HOH . 
HA 12 HOH B 40 1440 131 HOH HOH . 
HA 12 HOH B 41 1441 62 HOH HOH . 
HA 12 HOH B 42 1442 83 HOH HOH . 
HA 12 HOH B 43 1443 161 HOH HOH . 
IA 12 HOH C 1 1701 55 HOH HOH . 
IA 12 HOH C 2 1702 117 HOH HOH . 
IA 12 HOH C 3 1703 52 HOH HOH . 
IA 12 HOH C 4 1704 40 HOH HOH . 
IA 12 HOH C 5 1705 3 HOH HOH . 
IA 12 HOH C 6 1706 6 HOH HOH . 
IA 12 HOH C 7 1707 15 HOH HOH . 
IA 12 HOH C 8 1708 35 HOH HOH . 
IA 12 HOH C 9 1709 123 HOH HOH . 
IA 12 HOH C 10 1710 173 HOH HOH . 
IA 12 HOH C 11 1711 127 HOH HOH . 
IA 12 HOH C 12 1712 119 HOH HOH . 
IA 12 HOH C 13 1713 129 HOH HOH . 
IA 12 HOH C 14 1714 176 HOH HOH . 
IA 12 HOH C 15 1715 46 HOH HOH . 
IA 12 HOH C 16 1716 128 HOH HOH . 
IA 12 HOH C 17 1717 105 HOH HOH . 
IA 12 HOH C 18 1718 81 HOH HOH . 
IA 12 HOH C 19 1719 120 HOH HOH . 
IA 12 HOH C 20 1720 100 HOH HOH . 
IA 12 HOH C 21 1721 61 HOH HOH . 
IA 12 HOH C 22 1722 184 HOH HOH . 
IA 12 HOH C 23 1723 37 HOH HOH . 
IA 12 HOH C 24 1724 164 HOH HOH . 
IA 12 HOH C 25 1725 180 HOH HOH . 
IA 12 HOH C 26 1726 80 HOH HOH . 
IA 12 HOH C 27 1727 29 HOH HOH . 
IA 12 HOH C 28 1728 168 HOH HOH . 
IA 12 HOH C 29 1729 166 HOH HOH . 
IA 12 HOH C 30 1730 78 HOH HOH . 
IA 12 HOH C 31 1731 5 HOH HOH . 
IA 12 HOH C 32 1732 23 HOH HOH . 
IA 12 HOH C 33 1733 21 HOH HOH . 
IA 12 HOH C 34 1734 141 HOH HOH . 
IA 12 HOH C 35 1735 110 HOH HOH . 
IA 12 HOH C 36 1736 108 HOH HOH . 
IA 12 HOH C 37 1737 56 HOH HOH . 
IA 12 HOH C 38 1738 122 HOH HOH . 
IA 12 HOH C 39 1739 24 HOH HOH . 
IA 12 HOH C 40 1740 54 HOH HOH . 
IA 12 HOH C 41 1741 1 HOH HOH . 
IA 12 HOH C 42 1742 165 HOH HOH . 
IA 12 HOH C 43 1743 101 HOH HOH . 
IA 12 HOH C 44 1744 126 HOH HOH . 
IA 12 HOH C 45 1745 125 HOH HOH . 
IA 12 HOH C 46 1746 32 HOH HOH . 
IA 12 HOH C 47 1747 181 HOH HOH . 
IA 12 HOH C 48 1748 99 HOH HOH . 
IA 12 HOH C 49 1749 51 HOH HOH . 
IA 12 HOH C 50 1750 179 HOH HOH . 
IA 12 HOH C 51 1751 144 HOH HOH . 
IA 12 HOH C 52 1752 124 HOH HOH . 
IA 12 HOH C 53 1753 175 HOH HOH . 
IA 12 HOH C 54 1754 60 HOH HOH . 
IA 12 HOH C 55 1755 174 HOH HOH . 
JA 12 HOH D 1 301 153 HOH HOH . 
JA 12 HOH D 2 302 47 HOH HOH . 
JA 12 HOH D 3 303 4 HOH HOH . 
JA 12 HOH D 4 304 73 HOH HOH . 
JA 12 HOH D 5 305 75 HOH HOH . 
JA 12 HOH D 6 306 74 HOH HOH . 
JA 12 HOH D 7 307 154 HOH HOH . 
KA 12 HOH E 1 301 113 HOH HOH . 
KA 12 HOH E 2 302 9 HOH HOH . 
KA 12 HOH E 3 303 112 HOH HOH . 
KA 12 HOH E 4 304 114 HOH HOH . 
KA 12 HOH E 5 305 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL1 1KE . . . I 5 32.973 17.392 -37.428 1 94.78 ? CL1 1KE 1104 A 1 
HETATM 2 C C9 1KE . . . I 5 32.692 17.42 -39.202 1 95.04 ? C9 1KE 1104 A 1 
HETATM 3 C C10 1KE . . . I 5 32.809 18.622 -39.895 1 97.01 ? C10 1KE 1104 A 1 
HETATM 4 C C11 1KE . . . I 5 32.593 18.648 -41.271 1 97.49 ? C11 1KE 1104 A 1 
HETATM 5 I I1 1KE . . . I 5 32.767 20.448 -42.318 1 101.53 ? I1 1KE 1104 A 1 
HETATM 6 C C12 1KE . . . I 5 32.26 17.479 -41.955 1 95.89 ? C12 1KE 1104 A 1 
HETATM 7 N N13 1KE . . . I 5 32.14 16.308 -41.311 1 93.94 ? N13 1KE 1104 A 1 
HETATM 8 C C8 1KE . . . I 5 32.333 16.194 -39.975 1 93.35 ? C8 1KE 1104 A 1 
HETATM 9 N N3 1KE . . . I 5 32.179 14.918 -39.401 1 91.28 ? N3 1KE 1104 A 1 
HETATM 10 C C2 1KE . . . I 5 31.265 14.723 -38.273 1 90.77 ? C2 1KE 1104 A 1 
HETATM 11 C C1 1KE . . . I 5 31.816 13.634 -37.361 1 89.16 ? C1 1KE 1104 A 1 
HETATM 12 C C4 1KE . . . I 5 32.893 13.808 -40.038 1 89.76 ? C4 1KE 1104 A 1 
HETATM 13 C C5 1KE . . . I 5 33.223 12.704 -39.036 1 88.16 ? C5 1KE 1104 A 1 
HETATM 14 N N1 1KE . . . I 5 32.083 12.429 -38.154 1 87.74 ? N1 1KE 1104 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#