data_7OVD
#
_model_server_result.job_id            oZDdQgc3isXFXLz4T6tMeg 
_model_server_result.datetime_utc      '2024-11-18 18:28:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ovd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":512}' 
#
_entry.id    7OVD 
#
_exptl.entry_id    7OVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7OVD 
_cell.length_a            99.177 
_cell.length_b            99.177 
_cell.length_c            99.593 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    'P 6c' 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 K N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 252 A ALA 252 1_555 A N CME 253 A CME 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C CME 253 A CME 253 1_555 A N THR 254 A THR 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 159 n n 
C1 C2 EDO sing 160 n n 
C1 H11 EDO sing 161 n n 
C1 H12 EDO sing 162 n n 
O1 HO1 EDO sing 163 n n 
C2 O2 EDO sing 164 n n 
C2 H21 EDO sing 165 n n 
C2 H22 EDO sing 166 n n 
O2 HO2 EDO sing 167 n n 
#
_atom_sites.entry_id                     7OVD 
_atom_sites.fract_transf_matrix[1][1]    0.010083 
_atom_sites.fract_transf_matrix[1][2]    0.005821 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011643 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010041 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 1S2 A 1 501 501 1S2 102 . 
C 3 ACT A 1 502 601 ACT ACT . 
D 4 DMS A 1 503 701 DMS DMS . 
E 4 DMS A 1 504 801 DMS DMS . 
F 4 DMS A 1 505 901 DMS DMS . 
G 5 EDO A 1 506 1001 EDO EDO . 
H 5 EDO A 1 507 1101 EDO EDO . 
I 3 ACT A 1 508 1201 ACT ACT . 
J 3 ACT A 1 509 1301 ACT ACT . 
K 5 EDO A 1 510 1401 EDO EDO . 
L 4 DMS A 1 511 1501 DMS DMS . 
M 5 EDO A 1 512 1601 EDO EDO . 
N 5 EDO A 1 513 1701 EDO EDO . 
O 5 EDO A 1 514 1801 EDO EDO . 
P 3 ACT A 1 515 1 ACT ACT . 
Q 6 HOH A 1 601 76 HOH HOH . 
Q 6 HOH A 2 602 24 HOH HOH . 
Q 6 HOH A 3 603 5 HOH HOH . 
Q 6 HOH A 4 604 10 HOH HOH . 
Q 6 HOH A 5 605 17 HOH HOH . 
Q 6 HOH A 6 606 33 HOH HOH . 
Q 6 HOH A 7 607 12 HOH HOH . 
Q 6 HOH A 8 608 60 HOH HOH . 
Q 6 HOH A 9 609 37 HOH HOH . 
Q 6 HOH A 10 610 52 HOH HOH . 
Q 6 HOH A 11 611 71 HOH HOH . 
Q 6 HOH A 12 612 29 HOH HOH . 
Q 6 HOH A 13 613 25 HOH HOH . 
Q 6 HOH A 14 614 49 HOH HOH . 
Q 6 HOH A 15 615 9 HOH HOH . 
Q 6 HOH A 16 616 1 HOH HOH . 
Q 6 HOH A 17 617 46 HOH HOH . 
Q 6 HOH A 18 618 66 HOH HOH . 
Q 6 HOH A 19 619 2 HOH HOH . 
Q 6 HOH A 20 620 48 HOH HOH . 
Q 6 HOH A 21 621 31 HOH HOH . 
Q 6 HOH A 22 622 11 HOH HOH . 
Q 6 HOH A 23 623 20 HOH HOH . 
Q 6 HOH A 24 624 6 HOH HOH . 
Q 6 HOH A 25 625 23 HOH HOH . 
Q 6 HOH A 26 626 22 HOH HOH . 
Q 6 HOH A 27 627 13 HOH HOH . 
Q 6 HOH A 28 628 40 HOH HOH . 
Q 6 HOH A 29 629 45 HOH HOH . 
Q 6 HOH A 30 630 7 HOH HOH . 
Q 6 HOH A 31 631 14 HOH HOH . 
Q 6 HOH A 32 632 43 HOH HOH . 
Q 6 HOH A 33 633 3 HOH HOH . 
Q 6 HOH A 34 634 51 HOH HOH . 
Q 6 HOH A 35 635 32 HOH HOH . 
Q 6 HOH A 36 636 77 HOH HOH . 
Q 6 HOH A 37 637 4 HOH HOH . 
Q 6 HOH A 38 638 19 HOH HOH . 
Q 6 HOH A 39 639 39 HOH HOH . 
Q 6 HOH A 40 640 55 HOH HOH . 
Q 6 HOH A 41 641 18 HOH HOH . 
Q 6 HOH A 42 642 67 HOH HOH . 
Q 6 HOH A 43 643 26 HOH HOH . 
Q 6 HOH A 44 644 36 HOH HOH . 
Q 6 HOH A 45 645 38 HOH HOH . 
Q 6 HOH A 46 646 30 HOH HOH . 
Q 6 HOH A 47 647 47 HOH HOH . 
Q 6 HOH A 48 648 61 HOH HOH . 
Q 6 HOH A 49 649 42 HOH HOH . 
Q 6 HOH A 50 650 78 HOH HOH . 
Q 6 HOH A 51 651 53 HOH HOH . 
Q 6 HOH A 52 652 73 HOH HOH . 
Q 6 HOH A 53 653 82 HOH HOH . 
Q 6 HOH A 54 654 79 HOH HOH . 
Q 6 HOH A 55 655 74 HOH HOH . 
Q 6 HOH A 56 656 64 HOH HOH . 
Q 6 HOH A 57 657 72 HOH HOH . 
Q 6 HOH A 58 658 85 HOH HOH . 
Q 6 HOH A 59 659 83 HOH HOH . 
Q 6 HOH A 60 660 41 HOH HOH . 
Q 6 HOH A 61 661 62 HOH HOH . 
Q 6 HOH A 62 662 44 HOH HOH . 
Q 6 HOH A 63 663 81 HOH HOH . 
Q 6 HOH A 64 664 84 HOH HOH . 
Q 6 HOH A 65 665 75 HOH HOH . 
Q 6 HOH A 66 666 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 5 -34.001 14.084 26.205 1 69.48 ? C1 EDO 512 A 1 
HETATM 2 O O1 EDO . . . M 5 -35.432 14.059 26.119 1 74.21 ? O1 EDO 512 A 1 
HETATM 3 C C2 EDO . . . M 5 -33.531 15.367 26.881 1 70.94 ? C2 EDO 512 A 1 
HETATM 4 O O2 EDO . . . M 5 -32.245 15.734 26.361 1 64.82 ? O2 EDO 512 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#