data_7OVO # _model_server_result.job_id HPa4v9LsH_3hGvbdbCy_XQ _model_server_result.datetime_utc '2024-11-25 23:46:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ovo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 7OVO # _exptl.entry_id 7OVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OVO _cell.length_a 100.429 _cell.length_b 100.429 _cell.length_c 202.853 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall 'P 4cw 2c' _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 352 A CYS 351 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 A SG CYS 354 A CYS 353 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc3 A SG CYS 357 A CYS 356 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 A ND1 HIS 383 A HIS 382 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 B SG CYS 309 C CYS 317 1_555 H ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 B SG CYS 311 C CYS 319 1_555 H ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 B SG CYS 314 C CYS 322 1_555 H ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc8 B ND1 HIS 340 C HIS 348 1_555 H ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7OVO _atom_sites.fract_transf_matrix[1][1] 0.009957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 1 ZN ZN . D 4 SO4 A 1 502 2 SO4 SO4 . E 4 SO4 A 1 503 6 SO4 SO4 . F 5 DMS A 1 504 1 DMS DMS . G 6 QEI C 1 501 1 QEI QUE . H 3 ZN C 1 502 2 ZN ZN . I 4 SO4 C 1 503 1 SO4 SO4 . J 4 SO4 C 1 504 3 SO4 SO4 . K 4 SO4 C 1 505 7 SO4 SO4 . L 4 SO4 C 1 506 10 SO4 SO4 . M 4 SO4 C 1 507 14 SO4 SO4 . N 7 HOH A 1 601 131 HOH HOH . N 7 HOH A 2 602 150 HOH HOH . N 7 HOH A 3 603 253 HOH HOH . N 7 HOH A 4 604 98 HOH HOH . N 7 HOH A 5 605 137 HOH HOH . N 7 HOH A 6 606 109 HOH HOH . N 7 HOH A 7 607 196 HOH HOH . N 7 HOH A 8 608 139 HOH HOH . N 7 HOH A 9 609 84 HOH HOH . N 7 HOH A 10 610 22 HOH HOH . N 7 HOH A 11 611 189 HOH HOH . N 7 HOH A 12 612 61 HOH HOH . N 7 HOH A 13 613 197 HOH HOH . N 7 HOH A 14 614 164 HOH HOH . N 7 HOH A 15 615 192 HOH HOH . N 7 HOH A 16 616 92 HOH HOH . N 7 HOH A 17 617 17 HOH HOH . N 7 HOH A 18 618 115 HOH HOH . N 7 HOH A 19 619 75 HOH HOH . N 7 HOH A 20 620 138 HOH HOH . N 7 HOH A 21 621 165 HOH HOH . N 7 HOH A 22 622 64 HOH HOH . N 7 HOH A 23 623 209 HOH HOH . N 7 HOH A 24 624 65 HOH HOH . N 7 HOH A 25 625 277 HOH HOH . N 7 HOH A 26 626 49 HOH HOH . N 7 HOH A 27 627 200 HOH HOH . N 7 HOH A 28 628 74 HOH HOH . N 7 HOH A 29 629 106 HOH HOH . N 7 HOH A 30 630 12 HOH HOH . N 7 HOH A 31 631 86 HOH HOH . N 7 HOH A 32 632 184 HOH HOH . N 7 HOH A 33 633 272 HOH HOH . N 7 HOH A 34 634 125 HOH HOH . N 7 HOH A 35 635 183 HOH HOH . N 7 HOH A 36 636 67 HOH HOH . N 7 HOH A 37 637 207 HOH HOH . N 7 HOH A 38 638 141 HOH HOH . N 7 HOH A 39 639 153 HOH HOH . N 7 HOH A 40 640 265 HOH HOH . N 7 HOH A 41 641 94 HOH HOH . N 7 HOH A 42 642 27 HOH HOH . N 7 HOH A 43 643 173 HOH HOH . N 7 HOH A 44 644 48 HOH HOH . N 7 HOH A 45 645 170 HOH HOH . N 7 HOH A 46 646 274 HOH HOH . N 7 HOH A 47 647 199 HOH HOH . N 7 HOH A 48 648 70 HOH HOH . N 7 HOH A 49 649 57 HOH HOH . N 7 HOH A 50 650 195 HOH HOH . N 7 HOH A 51 651 250 HOH HOH . N 7 HOH A 52 652 121 HOH HOH . N 7 HOH A 53 653 144 HOH HOH . N 7 HOH A 54 654 134 HOH HOH . N 7 HOH A 55 655 278 HOH HOH . N 7 HOH A 56 656 208 HOH HOH . N 7 HOH A 57 657 96 HOH HOH . N 7 HOH A 58 658 73 HOH HOH . N 7 HOH A 59 659 264 HOH HOH . N 7 HOH A 60 660 79 HOH HOH . N 7 HOH A 61 661 205 HOH HOH . N 7 HOH A 62 662 244 HOH HOH . N 7 HOH A 63 663 249 HOH HOH . N 7 HOH A 64 664 101 HOH HOH . N 7 HOH A 65 665 204 HOH HOH . N 7 HOH A 66 666 103 HOH HOH . N 7 HOH A 67 667 198 HOH HOH . N 7 HOH A 68 668 194 HOH HOH . O 7 HOH C 1 601 270 HOH HOH . O 7 HOH C 2 602 30 HOH HOH . O 7 HOH C 3 603 44 HOH HOH . O 7 HOH C 4 604 108 HOH HOH . O 7 HOH C 5 605 156 HOH HOH . O 7 HOH C 6 606 206 HOH HOH . O 7 HOH C 7 607 155 HOH HOH . O 7 HOH C 8 608 147 HOH HOH . O 7 HOH C 9 609 82 HOH HOH . O 7 HOH C 10 610 149 HOH HOH . O 7 HOH C 11 611 59 HOH HOH . O 7 HOH C 12 612 102 HOH HOH . O 7 HOH C 13 613 4 HOH HOH . O 7 HOH C 14 614 146 HOH HOH . O 7 HOH C 15 615 80 HOH HOH . O 7 HOH C 16 616 62 HOH HOH . O 7 HOH C 17 617 16 HOH HOH . O 7 HOH C 18 618 135 HOH HOH . O 7 HOH C 19 619 240 HOH HOH . O 7 HOH C 20 620 32 HOH HOH . O 7 HOH C 21 621 267 HOH HOH . O 7 HOH C 22 622 50 HOH HOH . O 7 HOH C 23 623 242 HOH HOH . O 7 HOH C 24 624 1 HOH HOH . O 7 HOH C 25 625 29 HOH HOH . O 7 HOH C 26 626 5 HOH HOH . O 7 HOH C 27 627 227 HOH HOH . O 7 HOH C 28 628 11 HOH HOH . O 7 HOH C 29 629 251 HOH HOH . O 7 HOH C 30 630 68 HOH HOH . O 7 HOH C 31 631 38 HOH HOH . O 7 HOH C 32 632 132 HOH HOH . O 7 HOH C 33 633 140 HOH HOH . O 7 HOH C 34 634 7 HOH HOH . O 7 HOH C 35 635 107 HOH HOH . O 7 HOH C 36 636 77 HOH HOH . O 7 HOH C 37 637 31 HOH HOH . O 7 HOH C 38 638 168 HOH HOH . O 7 HOH C 39 639 160 HOH HOH . O 7 HOH C 40 640 19 HOH HOH . O 7 HOH C 41 641 26 HOH HOH . O 7 HOH C 42 642 116 HOH HOH . O 7 HOH C 43 643 112 HOH HOH . O 7 HOH C 44 644 230 HOH HOH . O 7 HOH C 45 645 51 HOH HOH . O 7 HOH C 46 646 88 HOH HOH . O 7 HOH C 47 647 8 HOH HOH . O 7 HOH C 48 648 43 HOH HOH . O 7 HOH C 49 649 261 HOH HOH . O 7 HOH C 50 650 159 HOH HOH . O 7 HOH C 51 651 178 HOH HOH . O 7 HOH C 52 652 54 HOH HOH . O 7 HOH C 53 653 110 HOH HOH . O 7 HOH C 54 654 42 HOH HOH . O 7 HOH C 55 655 87 HOH HOH . O 7 HOH C 56 656 72 HOH HOH . O 7 HOH C 57 657 213 HOH HOH . O 7 HOH C 58 658 239 HOH HOH . O 7 HOH C 59 659 34 HOH HOH . O 7 HOH C 60 660 157 HOH HOH . O 7 HOH C 61 661 56 HOH HOH . O 7 HOH C 62 662 143 HOH HOH . O 7 HOH C 63 663 214 HOH HOH . O 7 HOH C 64 664 37 HOH HOH . O 7 HOH C 65 665 237 HOH HOH . O 7 HOH C 66 666 211 HOH HOH . O 7 HOH C 67 667 130 HOH HOH . O 7 HOH C 68 668 3 HOH HOH . O 7 HOH C 69 669 90 HOH HOH . O 7 HOH C 70 670 41 HOH HOH . O 7 HOH C 71 671 148 HOH HOH . O 7 HOH C 72 672 63 HOH HOH . O 7 HOH C 73 673 212 HOH HOH . O 7 HOH C 74 674 124 HOH HOH . O 7 HOH C 75 675 46 HOH HOH . O 7 HOH C 76 676 76 HOH HOH . O 7 HOH C 77 677 25 HOH HOH . O 7 HOH C 78 678 120 HOH HOH . O 7 HOH C 79 679 161 HOH HOH . O 7 HOH C 80 680 66 HOH HOH . O 7 HOH C 81 681 33 HOH HOH . O 7 HOH C 82 682 35 HOH HOH . O 7 HOH C 83 683 83 HOH HOH . O 7 HOH C 84 684 99 HOH HOH . O 7 HOH C 85 685 6 HOH HOH . O 7 HOH C 86 686 176 HOH HOH . O 7 HOH C 87 687 40 HOH HOH . O 7 HOH C 88 688 166 HOH HOH . O 7 HOH C 89 689 169 HOH HOH . O 7 HOH C 90 690 55 HOH HOH . O 7 HOH C 91 691 100 HOH HOH . O 7 HOH C 92 692 2 HOH HOH . O 7 HOH C 93 693 21 HOH HOH . O 7 HOH C 94 694 58 HOH HOH . O 7 HOH C 95 695 39 HOH HOH . O 7 HOH C 96 696 53 HOH HOH . O 7 HOH C 97 697 45 HOH HOH . O 7 HOH C 98 698 162 HOH HOH . O 7 HOH C 99 699 9 HOH HOH . O 7 HOH C 100 700 182 HOH HOH . O 7 HOH C 101 701 13 HOH HOH . O 7 HOH C 102 702 276 HOH HOH . O 7 HOH C 103 703 238 HOH HOH . O 7 HOH C 104 704 18 HOH HOH . O 7 HOH C 105 705 105 HOH HOH . O 7 HOH C 106 706 24 HOH HOH . O 7 HOH C 107 707 186 HOH HOH . O 7 HOH C 108 708 221 HOH HOH . O 7 HOH C 109 709 266 HOH HOH . O 7 HOH C 110 710 117 HOH HOH . O 7 HOH C 111 711 89 HOH HOH . O 7 HOH C 112 712 60 HOH HOH . O 7 HOH C 113 713 232 HOH HOH . O 7 HOH C 114 714 123 HOH HOH . O 7 HOH C 115 715 171 HOH HOH . O 7 HOH C 116 716 271 HOH HOH . O 7 HOH C 117 717 255 HOH HOH . O 7 HOH C 118 718 217 HOH HOH . O 7 HOH C 119 719 187 HOH HOH . O 7 HOH C 120 720 52 HOH HOH . O 7 HOH C 121 721 193 HOH HOH . O 7 HOH C 122 722 14 HOH HOH . O 7 HOH C 123 723 10 HOH HOH . O 7 HOH C 124 724 231 HOH HOH . O 7 HOH C 125 725 23 HOH HOH . O 7 HOH C 126 726 229 HOH HOH . O 7 HOH C 127 727 91 HOH HOH . O 7 HOH C 128 728 262 HOH HOH . O 7 HOH C 129 729 260 HOH HOH . O 7 HOH C 130 730 69 HOH HOH . O 7 HOH C 131 731 175 HOH HOH . O 7 HOH C 132 732 185 HOH HOH . O 7 HOH C 133 733 71 HOH HOH . O 7 HOH C 134 734 174 HOH HOH . O 7 HOH C 135 735 210 HOH HOH . O 7 HOH C 136 736 126 HOH HOH . O 7 HOH C 137 737 36 HOH HOH . O 7 HOH C 138 738 256 HOH HOH . O 7 HOH C 139 739 225 HOH HOH . O 7 HOH C 140 740 119 HOH HOH . O 7 HOH C 141 741 216 HOH HOH . O 7 HOH C 142 742 268 HOH HOH . O 7 HOH C 143 743 179 HOH HOH . O 7 HOH C 144 744 97 HOH HOH . O 7 HOH C 145 745 145 HOH HOH . O 7 HOH C 146 746 219 HOH HOH . O 7 HOH C 147 747 167 HOH HOH . O 7 HOH C 148 748 113 HOH HOH . O 7 HOH C 149 749 128 HOH HOH . O 7 HOH C 150 750 127 HOH HOH . O 7 HOH C 151 751 252 HOH HOH . O 7 HOH C 152 752 257 HOH HOH . O 7 HOH C 153 753 245 HOH HOH . O 7 HOH C 154 754 248 HOH HOH . O 7 HOH C 155 755 78 HOH HOH . O 7 HOH C 156 756 154 HOH HOH . O 7 HOH C 157 757 247 HOH HOH . O 7 HOH C 158 758 243 HOH HOH . O 7 HOH C 159 759 275 HOH HOH . O 7 HOH C 160 760 15 HOH HOH . O 7 HOH C 161 761 136 HOH HOH . O 7 HOH C 162 762 142 HOH HOH . O 7 HOH C 163 763 263 HOH HOH . O 7 HOH C 164 764 254 HOH HOH . O 7 HOH C 165 765 218 HOH HOH . O 7 HOH C 166 766 93 HOH HOH . O 7 HOH C 167 767 223 HOH HOH . O 7 HOH C 168 768 246 HOH HOH . O 7 HOH C 169 769 215 HOH HOH . O 7 HOH C 170 770 258 HOH HOH . O 7 HOH C 171 771 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 5 -32.074 38.961 -5.351 0.88 67.93 ? S DMS 504 A 1 HETATM 2 O O DMS . . . F 5 -30.892 39.859 -5.522 0.88 73.14 ? O DMS 504 A 1 HETATM 3 C C1 DMS . . . F 5 -31.569 37.314 -4.784 0.88 68.22 ? C1 DMS 504 A 1 HETATM 4 C C2 DMS . . . F 5 -33.066 39.47 -3.926 0.88 69.86 ? C2 DMS 504 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 4 #