data_7OVR
#
_model_server_result.job_id            YH1gsPS0FCM3aEj5YkQJcg 
_model_server_result.datetime_utc      '2024-10-19 15:51:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ovr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":202}' 
#
_entry.id    7OVR 
#
_exptl.entry_id    7OVR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.566 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
? 3 FA N N 
? 3 HA N N 
? 3 JA N N 
? 3 LA N N 
? 3 NA N N 
? 3 PA N N 
? 3 RA N N 
? 3 TA N N 
? 3 VA N N 
? 3 XA N N 
? 3 ZA N N 
? 3 BB N N 
? 3 DB N N 
? 3 FB N N 
? 3 HB N N 
? 3 JB N N 
? 3 LB N N 
? 3 NB N N 
? 3 PB N N 
? 3 RB N N 
? 3 TB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A N GLY 1 A GLY 2 1_555 Y C1 MYR . A MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B N GLY 1 B GLY 2 1_555 AA C1 MYR . B MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 C N GLY 1 C GLY 2 1_555 CA C1 MYR . C MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 D N GLY 1 D GLY 2 1_555 EA C1 MYR . D MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 E N GLY 1 E GLY 2 1_555 GA C1 MYR . E MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 F N GLY 1 F GLY 2 1_555 IA C1 MYR . F MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 G N GLY 1 H GLY 2 1_555 KA C1 MYR . H MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 H N GLY 1 I GLY 2 1_555 MA C1 MYR . I MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 I N GLY 1 J GLY 2 1_555 OA C1 MYR . J MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 J N GLY 1 O GLY 2 1_555 QA C1 MYR . O MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 K N GLY 1 P GLY 2 1_555 SA C1 MYR . P MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 L N GLY 1 Q GLY 2 1_555 UA C1 MYR . Q MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 M N GLY 1 R GLY 2 1_555 WA C1 MYR . R MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale14 N N GLY 1 S GLY 2 1_555 YA C1 MYR . S MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 O N GLY 1 U GLY 2 1_555 AB C1 MYR . U MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 P N GLY 1 W GLY 2 1_555 CB C1 MYR . W MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale17 Q N GLY 1 Y GLY 2 1_555 EB C1 MYR . Y MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale18 R N GLY 1 b GLY 2 1_555 GB C1 MYR . b MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale19 S N GLY 1 c GLY 2 1_555 IB C1 MYR . c MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale20 T N GLY 1 d GLY 2 1_555 KB C1 MYR . d MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale21 U N GLY 1 e GLY 2 1_555 MB C1 MYR . e MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale22 V N GLY 1 f GLY 2 1_555 OB C1 MYR . f MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale23 W N GLY 1 j GLY 2 1_555 QB C1 MYR . j MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 X N GLY 1 l GLY 2 1_555 SB C1 MYR . l MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C25 H49 O19 P3' 
_chem_comp.formula_weight    746.566 
_chem_comp.id                PIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' 
#
_atom_sites.entry_id                     7OVR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 2 MYR A 1 201 1 MYR MYR . 
Z 3 PIO A 1 202 300 PIO PIO . 
AA 2 MYR B 1 201 1 MYR MYR . 
BA 3 PIO B 1 202 300 PIO PIO . 
CA 2 MYR C 1 201 1 MYR MYR . 
DA 3 PIO C 1 202 300 PIO PIO . 
EA 2 MYR D 1 201 1 MYR MYR . 
FA 3 PIO D 1 202 300 PIO PIO . 
GA 2 MYR E 1 201 1 MYR MYR . 
HA 3 PIO E 1 202 300 PIO PIO . 
IA 2 MYR F 1 201 1 MYR MYR . 
JA 3 PIO F 1 202 300 PIO PIO . 
KA 2 MYR H 1 201 1 MYR MYR . 
LA 3 PIO H 1 202 300 PIO PIO . 
MA 2 MYR I 1 201 1 MYR MYR . 
NA 3 PIO I 1 202 300 PIO PIO . 
OA 2 MYR J 1 201 1 MYR MYR . 
PA 3 PIO J 1 202 300 PIO PIO . 
QA 2 MYR O 1 201 1 MYR MYR . 
RA 3 PIO O 1 202 300 PIO PIO . 
SA 2 MYR P 1 201 1 MYR MYR . 
TA 3 PIO P 1 202 300 PIO PIO . 
UA 2 MYR Q 1 201 1 MYR MYR . 
VA 3 PIO Q 1 202 300 PIO PIO . 
WA 2 MYR R 1 201 1 MYR MYR . 
XA 3 PIO R 1 202 300 PIO PIO . 
YA 2 MYR S 1 201 1 MYR MYR . 
ZA 3 PIO S 1 202 300 PIO PIO . 
AB 2 MYR U 1 201 1 MYR MYR . 
BB 3 PIO U 1 202 300 PIO PIO . 
CB 2 MYR W 1 201 1 MYR MYR . 
DB 3 PIO W 1 202 300 PIO PIO . 
EB 2 MYR Y 1 201 1 MYR MYR . 
FB 3 PIO Y 1 202 300 PIO PIO . 
GB 2 MYR b 1 201 1 MYR MYR . 
HB 3 PIO b 1 202 300 PIO PIO . 
IB 2 MYR c 1 201 1 MYR MYR . 
JB 3 PIO c 1 202 300 PIO PIO . 
KB 2 MYR d 1 201 1 MYR MYR . 
LB 3 PIO d 1 202 300 PIO PIO . 
MB 2 MYR e 1 201 1 MYR MYR . 
NB 3 PIO e 1 202 300 PIO PIO . 
OB 2 MYR f 1 201 1 MYR MYR . 
PB 3 PIO f 1 202 300 PIO PIO . 
QB 2 MYR j 1 201 1 MYR MYR . 
RB 3 PIO j 1 202 300 PIO PIO . 
SB 2 MYR l 1 201 1 MYR MYR . 
TB 3 PIO l 1 202 300 PIO PIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIO . . . DA 3 142.907 146.234 141.528 1 64.01 ? C1 PIO 202 C 1 
HETATM 2 O O1 PIO . . . DA 3 142.32 145.477 142.727 1 72.23 ? O1 PIO 202 C 1 
HETATM 3 P P1 PIO . . . DA 3 142.997 144.93 144.155 1 21.3 ? P1 PIO 202 C 1 
HETATM 4 C C2 PIO . . . DA 3 143.527 147.635 141.857 1 1.14 ? C2 PIO 202 C 1 
HETATM 5 O O2 PIO . . . DA 3 142.612 148.513 142.508 1 44.41 ? O2 PIO 202 C 1 
HETATM 6 C C3 PIO . . . DA 3 144.045 148.314 140.57 1 43.3 ? C3 PIO 202 C 1 
HETATM 7 O O3 PIO . . . DA 3 144.592 149.59 140.937 1 30.13 ? O3 PIO 202 C 1 
HETATM 8 C C4 PIO . . . DA 3 142.898 148.451 139.492 1 44.32 ? C4 PIO 202 C 1 
HETATM 9 O O4 PIO . . . DA 3 143.465 149.079 138.229 1 0.43 ? O4 PIO 202 C 1 
HETATM 10 P P4 PIO . . . DA 3 143.611 150.673 137.768 1 72.21 ? P4 PIO 202 C 1 
HETATM 11 C C5 PIO . . . DA 3 142.312 147.015 139.192 1 74.25 ? C5 PIO 202 C 1 
HETATM 12 O O5 PIO . . . DA 3 141.21 147.151 138.238 1 73.34 ? O5 PIO 202 C 1 
HETATM 13 P P5 PIO . . . DA 3 140.877 146.457 136.779 1 23.11 ? P5 PIO 202 C 1 
HETATM 14 C C6 PIO . . . DA 3 141.793 146.308 140.467 1 35.24 ? C6 PIO 202 C 1 
HETATM 15 O O6 PIO . . . DA 3 141.368 144.96 140.21 1 4.53 ? O6 PIO 202 C 1 
HETATM 16 O O11 PIO . . . DA 3 144.463 144.706 143.776 1 74.22 ? O11 PIO 202 C 1 
HETATM 17 O O12 PIO . . . DA 3 142.7 146.027 145.144 1 11.42 ? O12 PIO 202 C 1 
HETATM 18 O O13 PIO . . . DA 3 142.27 143.674 144.533 1 20.14 ? O13 PIO 202 C 1 
HETATM 19 C C1A PIO . . . DA 3 142.861 141.366 140.803 1 11.21 ? C1A PIO 202 C 1 
HETATM 20 O O1A PIO . . . DA 3 141.822 141.484 140.191 1 2.21 ? O1A PIO 202 C 1 
HETATM 21 C C1B PIO . . . DA 3 142.728 141.354 146.548 1 71.35 ? C1B PIO 202 C 1 
HETATM 22 O O1B PIO . . . DA 3 141.898 142.17 146.907 1 1.35 ? O1B PIO 202 C 1 
HETATM 23 C C1C PIO . . . DA 3 141.974 142.725 143.529 1 44.23 ? C1C PIO 202 C 1 
HETATM 24 C C2A PIO . . . DA 3 144.196 141.688 140.113 1 41.22 ? C2A PIO 202 C 1 
HETATM 25 C C2B PIO . . . DA 3 143.836 140.89 147.532 1 2.4 ? C2B PIO 202 C 1 
HETATM 26 C C2C PIO . . . DA 3 143.227 141.902 143.137 1 55.42 ? C2C PIO 202 C 1 
HETATM 27 O O2C PIO . . . DA 3 142.853 140.949 142.157 1 74.04 ? O2C PIO 202 C 1 
HETATM 28 C C3A PIO . . . DA 3 144.19 141.161 138.664 1 62.52 ? C3A PIO 202 C 1 
HETATM 29 C C3B PIO . . . DA 3 143.594 139.484 148.109 1 3.44 ? C3B PIO 202 C 1 
HETATM 30 C C3C PIO . . . DA 3 143.837 141.162 144.352 1 4.22 ? C3C PIO 202 C 1 
HETATM 31 O O3C PIO . . . DA 3 142.806 140.811 145.25 1 51.13 ? O3C PIO 202 C 1 
HETATM 32 O O41 PIO . . . DA 3 144.625 150.496 136.641 1 73.43 ? O41 PIO 202 C 1 
HETATM 33 O O42 PIO . . . DA 3 142.238 151.089 137.315 1 73.23 ? O42 PIO 202 C 1 
HETATM 34 O O43 PIO . . . DA 3 144.08 151.511 138.947 1 53.21 ? O43 PIO 202 C 1 
HETATM 35 C C4A PIO . . . DA 3 145.127 142.025 137.801 1 60.15 ? C4A PIO 202 C 1 
HETATM 36 C C4B PIO . . . DA 3 142.17 139.355 148.678 1 2.34 ? C4B PIO 202 C 1 
HETATM 37 O O51 PIO . . . DA 3 140.997 147.666 135.871 1 10.44 ? O51 PIO 202 C 1 
HETATM 38 O O52 PIO . . . DA 3 141.939 145.376 136.656 1 34.44 ? O52 PIO 202 C 1 
HETATM 39 O O53 PIO . . . DA 3 139.465 145.947 136.953 1 45.01 ? O53 PIO 202 C 1 
HETATM 40 C C5A PIO . . . DA 3 144.358 143.251 137.274 1 12.33 ? C5A PIO 202 C 1 
HETATM 41 C C5B PIO . . . DA 3 141.473 138.141 148.037 1 45.32 ? C5B PIO 202 C 1 
HETATM 42 C C6A PIO . . . DA 3 145.287 144.477 137.271 1 40.14 ? C6A PIO 202 C 1 
HETATM 43 C C6B PIO . . . DA 3 141.873 136.86 148.791 1 53.35 ? C6B PIO 202 C 1 
HETATM 44 C C7A PIO . . . DA 3 145.592 144.889 135.818 1 11.4 ? C7A PIO 202 C 1 
HETATM 45 C C7B PIO . . . DA 3 140.893 136.625 149.957 1 31.12 ? C7B PIO 202 C 1 
HETATM 46 C C8A PIO . . . DA 3 144.829 146.183 135.479 1 22.32 ? C8A PIO 202 C 1 
HETATM 47 C C8B PIO . . . DA 3 141.123 135.217 150.54 1 21.12 ? C8B PIO 202 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    113 
_model_server_stats.query_time_ms           510 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           47 
#