data_7OVR # _model_server_result.job_id d-znJBNj7sdL6Y8yabkEtQ _model_server_result.datetime_utc '2024-10-19 15:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ovr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":202}' # _entry.id 7OVR # _exptl.entry_id 7OVR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 746.566 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Z N N ? 3 BA N N ? 3 DA N N ? 3 FA N N ? 3 HA N N ? 3 JA N N ? 3 LA N N ? 3 NA N N ? 3 PA N N ? 3 RA N N ? 3 TA N N ? 3 VA N N ? 3 XA N N ? 3 ZA N N ? 3 BB N N ? 3 DB N N ? 3 FB N N ? 3 HB N N ? 3 JB N N ? 3 LB N N ? 3 NB N N ? 3 PB N N ? 3 RB N N ? 3 TB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N GLY 1 A GLY 2 1_555 Y C1 MYR . A MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B N GLY 1 B GLY 2 1_555 AA C1 MYR . B MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C N GLY 1 C GLY 2 1_555 CA C1 MYR . C MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 D N GLY 1 D GLY 2 1_555 EA C1 MYR . D MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 E N GLY 1 E GLY 2 1_555 GA C1 MYR . E MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 F N GLY 1 F GLY 2 1_555 IA C1 MYR . F MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 G N GLY 1 H GLY 2 1_555 KA C1 MYR . H MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 H N GLY 1 I GLY 2 1_555 MA C1 MYR . I MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 I N GLY 1 J GLY 2 1_555 OA C1 MYR . J MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 J N GLY 1 O GLY 2 1_555 QA C1 MYR . O MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 K N GLY 1 P GLY 2 1_555 SA C1 MYR . P MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 L N GLY 1 Q GLY 2 1_555 UA C1 MYR . Q MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 M N GLY 1 R GLY 2 1_555 WA C1 MYR . R MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 N N GLY 1 S GLY 2 1_555 YA C1 MYR . S MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 O N GLY 1 U GLY 2 1_555 AB C1 MYR . U MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 P N GLY 1 W GLY 2 1_555 CB C1 MYR . W MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 Q N GLY 1 Y GLY 2 1_555 EB C1 MYR . Y MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 R N GLY 1 b GLY 2 1_555 GB C1 MYR . b MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 S N GLY 1 c GLY 2 1_555 IB C1 MYR . c MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 T N GLY 1 d GLY 2 1_555 KB C1 MYR . d MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 U N GLY 1 e GLY 2 1_555 MB C1 MYR . e MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 V N GLY 1 f GLY 2 1_555 OB C1 MYR . f MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 W N GLY 1 j GLY 2 1_555 QB C1 MYR . j MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 X N GLY 1 l GLY 2 1_555 SB C1 MYR . l MYR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C25 H49 O19 P3' _chem_comp.formula_weight 746.566 _chem_comp.id PIO _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' # _atom_sites.entry_id 7OVR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 2 MYR A 1 201 1 MYR MYR . Z 3 PIO A 1 202 300 PIO PIO . AA 2 MYR B 1 201 1 MYR MYR . BA 3 PIO B 1 202 300 PIO PIO . CA 2 MYR C 1 201 1 MYR MYR . DA 3 PIO C 1 202 300 PIO PIO . EA 2 MYR D 1 201 1 MYR MYR . FA 3 PIO D 1 202 300 PIO PIO . GA 2 MYR E 1 201 1 MYR MYR . HA 3 PIO E 1 202 300 PIO PIO . IA 2 MYR F 1 201 1 MYR MYR . JA 3 PIO F 1 202 300 PIO PIO . KA 2 MYR H 1 201 1 MYR MYR . LA 3 PIO H 1 202 300 PIO PIO . MA 2 MYR I 1 201 1 MYR MYR . NA 3 PIO I 1 202 300 PIO PIO . OA 2 MYR J 1 201 1 MYR MYR . PA 3 PIO J 1 202 300 PIO PIO . QA 2 MYR O 1 201 1 MYR MYR . RA 3 PIO O 1 202 300 PIO PIO . SA 2 MYR P 1 201 1 MYR MYR . TA 3 PIO P 1 202 300 PIO PIO . UA 2 MYR Q 1 201 1 MYR MYR . VA 3 PIO Q 1 202 300 PIO PIO . WA 2 MYR R 1 201 1 MYR MYR . XA 3 PIO R 1 202 300 PIO PIO . YA 2 MYR S 1 201 1 MYR MYR . ZA 3 PIO S 1 202 300 PIO PIO . AB 2 MYR U 1 201 1 MYR MYR . BB 3 PIO U 1 202 300 PIO PIO . CB 2 MYR W 1 201 1 MYR MYR . DB 3 PIO W 1 202 300 PIO PIO . EB 2 MYR Y 1 201 1 MYR MYR . FB 3 PIO Y 1 202 300 PIO PIO . GB 2 MYR b 1 201 1 MYR MYR . HB 3 PIO b 1 202 300 PIO PIO . IB 2 MYR c 1 201 1 MYR MYR . JB 3 PIO c 1 202 300 PIO PIO . KB 2 MYR d 1 201 1 MYR MYR . LB 3 PIO d 1 202 300 PIO PIO . MB 2 MYR e 1 201 1 MYR MYR . NB 3 PIO e 1 202 300 PIO PIO . OB 2 MYR f 1 201 1 MYR MYR . PB 3 PIO f 1 202 300 PIO PIO . QB 2 MYR j 1 201 1 MYR MYR . RB 3 PIO j 1 202 300 PIO PIO . SB 2 MYR l 1 201 1 MYR MYR . TB 3 PIO l 1 202 300 PIO PIO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PIO . . . HA 3 176.561 81.256 138.312 1 64.01 ? C1 PIO 202 E 1 HETATM 2 O O1 PIO . . . HA 3 175.662 81.294 139.555 1 72.23 ? O1 PIO 202 E 1 HETATM 3 P P1 PIO . . . HA 3 175.583 80.328 140.919 1 21.3 ? P1 PIO 202 E 1 HETATM 4 C C2 PIO . . . HA 3 178.097 81.394 138.59 1 1.14 ? C2 PIO 202 E 1 HETATM 5 O O2 PIO . . . HA 3 178.429 82.572 139.32 1 44.41 ? O2 PIO 202 E 1 HETATM 6 C C3 PIO . . . HA 3 178.89 81.383 137.264 1 43.3 ? C3 PIO 202 E 1 HETATM 7 O O3 PIO . . . HA 3 180.282 81.52 137.586 1 30.13 ? O3 PIO 202 E 1 HETATM 8 C C4 PIO . . . HA 3 178.394 82.523 136.289 1 44.32 ? C4 PIO 202 E 1 HETATM 9 O O4 PIO . . . HA 3 179.169 82.443 134.985 1 0.43 ? O4 PIO 202 E 1 HETATM 10 P P4 PIO . . . HA 3 180.604 83.146 134.516 1 72.21 ? P4 PIO 202 E 1 HETATM 11 C C5 PIO . . . HA 3 176.846 82.336 136.037 1 74.25 ? C5 PIO 202 E 1 HETATM 12 O O5 PIO . . . HA 3 176.377 83.428 135.182 1 73.34 ? O5 PIO 202 E 1 HETATM 13 P P5 PIO . . . HA 3 175.55 83.48 133.756 1 23.11 ? P5 PIO 202 E 1 HETATM 14 C C6 PIO . . . HA 3 176.027 82.335 137.351 1 35.24 ? C6 PIO 202 E 1 HETATM 15 O O6 PIO . . . HA 3 174.637 82.048 137.128 1 4.53 ? O6 PIO 202 E 1 HETATM 16 O O11 PIO . . . HA 3 176.102 78.979 140.414 1 74.22 ? O11 PIO 202 E 1 HETATM 17 O O12 PIO . . . HA 3 176.426 81.057 141.932 1 11.42 ? O12 PIO 202 E 1 HETATM 18 O O13 PIO . . . HA 3 174.148 80.301 141.355 1 20.14 ? O13 PIO 202 E 1 HETATM 19 C C1A PIO . . . HA 3 172.289 78.922 137.583 1 11.21 ? C1A PIO 202 E 1 HETATM 20 O O1A PIO . . . HA 3 171.85 79.924 137.062 1 2.21 ? O1A PIO 202 E 1 HETATM 21 C C1B PIO . . . HA 3 172.447 78.595 143.318 1 71.35 ? C1B PIO 202 E 1 HETATM 22 O O1B PIO . . . HA 3 172.756 79.692 143.748 1 1.35 ? O1B PIO 202 E 1 HETATM 23 C C1C PIO . . . HA 3 173.137 80.159 140.378 1 44.23 ? C1C PIO 202 E 1 HETATM 24 C C2A PIO . . . HA 3 173.203 77.982 136.78 1 41.22 ? C2A PIO 202 E 1 HETATM 25 C C2B PIO . . . HA 3 172.636 77.332 144.201 1 2.4 ? C2B PIO 202 E 1 HETATM 26 C C2C PIO . . . HA 3 173.031 78.696 139.877 1 55.42 ? C2C PIO 202 E 1 HETATM 27 O O2C PIO . . . HA 3 171.978 78.618 138.931 1 74.04 ? O2C PIO 202 E 1 HETATM 28 C C3A PIO . . . HA 3 172.685 77.835 135.337 1 62.52 ? C3A PIO 202 E 1 HETATM 29 C C3B PIO . . . HA 3 171.321 76.797 144.794 1 3.44 ? C3B PIO 202 E 1 HETATM 30 C C3C PIO . . . HA 3 172.743 77.708 141.034 1 4.22 ? C3C PIO 202 E 1 HETATM 31 O O3C PIO . . . HA 3 171.962 78.355 142.016 1 51.13 ? O3C PIO 202 E 1 HETATM 32 O O41 PIO . . . HA 3 180.909 82.268 133.305 1 73.43 ? O41 PIO 202 E 1 HETATM 33 O O42 PIO . . . HA 3 180.264 84.574 134.184 1 73.23 ? O42 PIO 202 E 1 HETATM 34 O O43 PIO . . . HA 3 181.611 83.071 135.652 1 53.21 ? O43 PIO 202 E 1 HETATM 35 C C4A PIO . . . HA 3 173.864 77.522 134.397 1 60.15 ? C4A PIO 202 E 1 HETATM 36 C C4B PIO . . . HA 3 170.525 77.918 145.483 1 2.34 ? C4B PIO 202 E 1 HETATM 37 O O51 PIO . . . HA 3 176.62 84.048 132.844 1 10.44 ? O51 PIO 202 E 1 HETATM 38 O O52 PIO . . . HA 3 175.136 82.033 133.54 1 34.44 ? O52 PIO 202 E 1 HETATM 39 O O53 PIO . . . HA 3 174.414 84.432 134.05 1 45.01 ? O53 PIO 202 E 1 HETATM 40 C C5A PIO . . . HA 3 174.523 78.837 133.941 1 12.33 ? C5A PIO 202 E 1 HETATM 41 C C5B PIO . . . HA 3 169.099 77.963 144.901 1 45.32 ? C5B PIO 202 E 1 HETATM 42 C C6A PIO . . . HA 3 176.047 78.647 133.862 1 40.14 ? C6A PIO 202 E 1 HETATM 43 C C6B PIO . . . HA 3 168.219 76.922 145.614 1 53.35 ? C6B PIO 202 E 1 HETATM 44 C C7A PIO . . . HA 3 176.496 78.699 132.389 1 11.4 ? C7A PIO 202 E 1 HETATM 45 C C7B PIO . . . HA 3 167.576 77.562 146.86 1 31.12 ? C7B PIO 202 E 1 HETATM 46 C C8A PIO . . . HA 3 177.224 80.029 132.12 1 22.32 ? C8A PIO 202 E 1 HETATM 47 C C8B PIO . . . HA 3 166.493 76.617 147.418 1 21.12 ? C8B PIO 202 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #