data_7OWB
#
_model_server_result.job_id            xhAUmvYPGr3HZNTnsvqrlg 
_model_server_result.datetime_utc      '2024-11-24 12:38:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7owb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7OWB 
#
_exptl.entry_id    7OWB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              569.6 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl (1R,2R,4S)-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OWB 
_cell.length_a            60.8 
_cell.length_b            103.137 
_cell.length_c            66.485 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OWB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 60.8 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H35 N O10' 
_chem_comp.formula_weight    569.6 
_chem_comp.id                3VL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl (1R,2R,4S)-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'aclacinomycin T' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C15 3VL doub 1 n y 
C14 C13 3VL sing 2 n y 
C15 C16 3VL sing 3 n y 
C13 C12 3VL doub 4 n y 
C16 O5 3VL sing 5 n n 
C16 C17 3VL doub 6 n y 
C12 C17 3VL sing 7 n y 
C12 C11 3VL sing 8 n n 
C17 C18 3VL sing 9 n n 
O4 C11 3VL doub 10 n n 
C11 C10 3VL sing 11 n n 
C18 O6 3VL doub 12 n n 
C18 C19 3VL sing 13 n n 
C10 C19 3VL doub 14 n y 
C10 C9 3VL sing 15 n y 
C19 C20 3VL sing 16 n y 
C9 C8 3VL doub 17 n y 
C20 O7 3VL sing 18 n n 
C20 C21 3VL doub 19 n y 
C30 N1 3VL sing 20 n n 
C8 C21 3VL sing 21 n y 
C8 C5 3VL sing 22 n n 
C21 C22 3VL sing 23 n n 
N1 C28 3VL sing 24 n n 
N1 C29 3VL sing 25 n n 
C28 C27 3VL sing 26 n n 
C28 C24 3VL sing 27 n n 
O3 C6 3VL sing 28 n n 
O3 C7 3VL sing 29 n n 
C5 C6 3VL sing 30 n n 
C5 C3 3VL sing 31 n n 
C27 C25 3VL sing 32 n n 
C27 O10 3VL sing 33 n n 
C22 O8 3VL sing 34 n n 
C22 C4 3VL sing 35 n n 
O8 C23 3VL sing 36 n n 
C6 O2 3VL doub 37 n n 
C25 C26 3VL sing 38 n n 
C25 O9 3VL sing 39 n n 
C24 C23 3VL sing 40 n n 
O1 C3 3VL sing 41 n n 
C23 O9 3VL sing 42 n n 
C3 C4 3VL sing 43 n n 
C3 C2 3VL sing 44 n n 
C1 C2 3VL sing 45 n n 
C1 H1 3VL sing 46 n n 
C1 H2 3VL sing 47 n n 
C1 H3 3VL sing 48 n n 
C2 H4 3VL sing 49 n n 
C2 H5 3VL sing 50 n n 
C4 H6 3VL sing 51 n n 
C4 H7 3VL sing 52 n n 
O1 H8 3VL sing 53 n n 
C5 H9 3VL sing 54 n n 
C7 H10 3VL sing 55 n n 
C7 H11 3VL sing 56 n n 
C7 H12 3VL sing 57 n n 
C9 H13 3VL sing 58 n n 
C13 H14 3VL sing 59 n n 
C14 H15 3VL sing 60 n n 
C15 H16 3VL sing 61 n n 
O5 H17 3VL sing 62 n n 
O7 H18 3VL sing 63 n n 
C22 H19 3VL sing 64 n n 
C23 H20 3VL sing 65 n n 
C24 H21 3VL sing 66 n n 
C24 H22 3VL sing 67 n n 
C25 H23 3VL sing 68 n n 
C26 H24 3VL sing 69 n n 
C26 H25 3VL sing 70 n n 
C26 H26 3VL sing 71 n n 
C27 H27 3VL sing 72 n n 
O10 H28 3VL sing 73 n n 
C28 H29 3VL sing 74 n n 
C29 H31 3VL sing 75 n n 
C29 H32 3VL sing 76 n n 
C29 H33 3VL sing 77 n n 
C30 H34 3VL sing 78 n n 
C30 H35 3VL sing 79 n n 
C30 H36 3VL sing 80 n n 
#
_atom_sites.entry_id                     7OWB 
_atom_sites.fract_transf_matrix[1][1]    0.016447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015041 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3VL A 1 401 401 3VL 3VL . 
C 3 SAH A 1 402 402 SAH SAH . 
D 4 HOH A 1 501 7 HOH HOH . 
D 4 HOH A 2 502 25 HOH HOH . 
D 4 HOH A 3 503 6 HOH HOH . 
D 4 HOH A 4 504 30 HOH HOH . 
D 4 HOH A 5 505 27 HOH HOH . 
D 4 HOH A 6 506 31 HOH HOH . 
D 4 HOH A 7 507 8 HOH HOH . 
D 4 HOH A 8 508 19 HOH HOH . 
D 4 HOH A 9 509 13 HOH HOH . 
D 4 HOH A 10 510 20 HOH HOH . 
D 4 HOH A 11 511 5 HOH HOH . 
D 4 HOH A 12 512 16 HOH HOH . 
D 4 HOH A 13 513 11 HOH HOH . 
D 4 HOH A 14 514 17 HOH HOH . 
D 4 HOH A 15 515 10 HOH HOH . 
D 4 HOH A 16 516 12 HOH HOH . 
D 4 HOH A 17 517 14 HOH HOH . 
D 4 HOH A 18 518 3 HOH HOH . 
D 4 HOH A 19 519 9 HOH HOH . 
D 4 HOH A 20 520 18 HOH HOH . 
D 4 HOH A 21 521 29 HOH HOH . 
D 4 HOH A 22 522 24 HOH HOH . 
D 4 HOH A 23 523 15 HOH HOH . 
D 4 HOH A 24 524 1 HOH HOH . 
D 4 HOH A 25 525 4 HOH HOH . 
D 4 HOH A 26 526 2 HOH HOH . 
D 4 HOH A 27 527 28 HOH HOH . 
D 4 HOH A 28 528 23 HOH HOH . 
D 4 HOH A 29 529 22 HOH HOH . 
D 4 HOH A 30 530 26 HOH HOH . 
D 4 HOH A 31 531 32 HOH HOH . 
D 4 HOH A 32 532 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3VL . . . B 2 18.927 -11.757 -21.274 0.61 47.71 ? C1 3VL 401 A 1 
HETATM 2 C C2 3VL . . . B 2 19.288 -13.228 -21.437 0.61 44.59 ? C2 3VL 401 A 1 
HETATM 3 C C3 3VL . . . B 2 18.945 -14.134 -20.227 0.61 43.21 ? C3 3VL 401 A 1 
HETATM 4 C C4 3VL . . . B 2 19.347 -15.629 -20.323 0.61 35.45 ? C4 3VL 401 A 1 
HETATM 5 O O1 3VL . . . B 2 17.53 -13.958 -19.998 0.61 46.49 ? O1 3VL 401 A 1 
HETATM 6 C C5 3VL . . . B 2 19.715 -13.562 -19.028 0.61 36.98 ? C5 3VL 401 A 1 
HETATM 7 C C6 3VL . . . B 2 21.076 -13.324 -19.312 0.61 40.27 ? C6 3VL 401 A 1 
HETATM 8 O O2 3VL . . . B 2 21.839 -14.207 -19.714 0.61 38.05 ? O2 3VL 401 A 1 
HETATM 9 O O3 3VL . . . B 2 21.463 -12.037 -19.085 0.61 42.18 ? O3 3VL 401 A 1 
HETATM 10 C C7 3VL . . . B 2 22.837 -11.861 -19.431 0.61 41.18 ? C7 3VL 401 A 1 
HETATM 11 C C8 3VL . . . B 2 19.571 -14.258 -17.818 0.61 30.19 ? C8 3VL 401 A 1 
HETATM 12 C C9 3VL . . . B 2 19.971 -13.681 -16.603 0.61 26.1 ? C9 3VL 401 A 1 
HETATM 13 C C10 3VL . . . B 2 19.959 -14.389 -15.397 0.61 25.26 ? C10 3VL 401 A 1 
HETATM 14 C C11 3VL . . . B 2 20.292 -13.767 -14.189 0.61 24.81 ? C11 3VL 401 A 1 
HETATM 15 O O4 3VL . . . B 2 20.608 -12.574 -14.164 0.61 24.67 ? O4 3VL 401 A 1 
HETATM 16 C C12 3VL . . . B 2 20.274 -14.482 -12.996 0.61 22.65 ? C12 3VL 401 A 1 
HETATM 17 C C13 3VL . . . B 2 20.623 -13.857 -11.803 0.61 21.11 ? C13 3VL 401 A 1 
HETATM 18 C C14 3VL . . . B 2 20.623 -14.545 -10.591 0.61 21.06 ? C14 3VL 401 A 1 
HETATM 19 C C15 3VL . . . B 2 20.26 -15.894 -10.578 0.61 22.92 ? C15 3VL 401 A 1 
HETATM 20 C C16 3VL . . . B 2 19.919 -16.503 -11.774 0.61 24.93 ? C16 3VL 401 A 1 
HETATM 21 O O5 3VL . . . B 2 19.576 -17.83 -11.797 0.61 32.19 ? O5 3VL 401 A 1 
HETATM 22 C C17 3VL . . . B 2 19.912 -15.816 -12.991 0.61 23.68 ? C17 3VL 401 A 1 
HETATM 23 C C18 3VL . . . B 2 19.57 -16.445 -14.194 0.61 27.47 ? C18 3VL 401 A 1 
HETATM 24 O O6 3VL . . . B 2 19.256 -17.641 -14.187 0.61 27.54 ? O6 3VL 401 A 1 
HETATM 25 C C19 3VL . . . B 2 19.594 -15.727 -15.398 0.61 24.51 ? C19 3VL 401 A 1 
HETATM 26 C C20 3VL . . . B 2 19.257 -16.298 -16.626 0.61 26.5 ? C20 3VL 401 A 1 
HETATM 27 O O7 3VL . . . B 2 18.891 -17.6 -16.657 0.61 30.41 ? O7 3VL 401 A 1 
HETATM 28 C C21 3VL . . . B 2 19.278 -15.621 -17.844 0.61 28.22 ? C21 3VL 401 A 1 
HETATM 29 C C22 3VL . . . B 2 18.887 -16.294 -19.017 0.61 34 ? C22 3VL 401 A 1 
HETATM 30 O O8 3VL . . . B 2 17.457 -16.06 -19.076 0.61 37.6 ? O8 3VL 401 A 1 
HETATM 31 C C23 3VL . . . B 2 16.796 -16.896 -20.09 0.61 43.43 ? C23 3VL 401 A 1 
HETATM 32 C C24 3VL . . . B 2 16.179 -18.127 -19.445 0.61 44.31 ? C24 3VL 401 A 1 
HETATM 33 O O9 3VL . . . B 2 15.75 -16.026 -20.607 0.61 46.07 ? O9 3VL 401 A 1 
HETATM 34 C C25 3VL . . . B 2 14.788 -15.58 -19.625 0.61 43.13 ? C25 3VL 401 A 1 
HETATM 35 C C26 3VL . . . B 2 13.806 -14.656 -20.342 0.61 39.61 ? C26 3VL 401 A 1 
HETATM 36 C C27 3VL . . . B 2 14.076 -16.811 -19.055 0.61 42.23 ? C27 3VL 401 A 1 
HETATM 37 O O10 3VL . . . B 2 13.276 -17.454 -20.106 0.61 39.39 ? O10 3VL 401 A 1 
HETATM 38 C C28 3VL . . . B 2 15.116 -17.74 -18.4 0.61 44.03 ? C28 3VL 401 A 1 
HETATM 39 N N1 3VL . . . B 2 14.542 -18.973 -17.806 0.61 47.17 ? N1 3VL 401 A 1 
HETATM 40 C C29 3VL . . . B 2 13.249 -18.808 -17.114 0.61 47.68 ? C29 3VL 401 A 1 
HETATM 41 C C30 3VL . . . B 2 15.477 -19.723 -16.985 0.61 45.28 ? C30 3VL 401 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           41 
#