data_7OWB # _model_server_result.job_id y8is4vIpUI96kiENl4hk1Q _model_server_result.datetime_utc '2024-10-15 11:18:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7owb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7OWB # _exptl.entry_id 7OWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OWB _cell.length_a 60.8 _cell.length_b 103.137 _cell.length_c 66.485 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 60.8 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 357 n n N HN1 SAH sing 358 n n N HN2 SAH sing 359 n n CA CB SAH sing 360 n n CA C SAH sing 361 n n CA HA SAH sing 362 n n CB CG SAH sing 363 n n CB HB1 SAH sing 364 n n CB HB2 SAH sing 365 n n CG SD SAH sing 366 n n CG HG1 SAH sing 367 n n CG HG2 SAH sing 368 n n SD C5' SAH sing 369 n n C O SAH doub 370 n n C OXT SAH sing 371 n n OXT HXT SAH sing 372 n n C5' C4' SAH sing 373 n n C5' "H5'1" SAH sing 374 n n C5' "H5'2" SAH sing 375 n n C4' O4' SAH sing 376 n n C4' C3' SAH sing 377 n n C4' H4' SAH sing 378 n n O4' C1' SAH sing 379 n n C3' O3' SAH sing 380 n n C3' C2' SAH sing 381 n n C3' H3' SAH sing 382 n n O3' HO3' SAH sing 383 n n C2' O2' SAH sing 384 n n C2' C1' SAH sing 385 n n C2' H2' SAH sing 386 n n O2' HO2' SAH sing 387 n n C1' N9 SAH sing 388 n n C1' H1' SAH sing 389 n n N9 C8 SAH sing 390 n y N9 C4 SAH sing 391 n y C8 N7 SAH doub 392 n y C8 H8 SAH sing 393 n n N7 C5 SAH sing 394 n y C5 C6 SAH sing 395 n y C5 C4 SAH doub 396 n y C6 N6 SAH sing 397 n n C6 N1 SAH doub 398 n y N6 HN61 SAH sing 399 n n N6 HN62 SAH sing 400 n n N1 C2 SAH sing 401 n y C2 N3 SAH doub 402 n y C2 H2 SAH sing 403 n n N3 C4 SAH sing 404 n y # _atom_sites.entry_id 7OWB _atom_sites.fract_transf_matrix[1][1] 0.016447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3VL A 1 401 401 3VL 3VL . C 3 SAH A 1 402 402 SAH SAH . D 4 HOH A 1 501 7 HOH HOH . D 4 HOH A 2 502 25 HOH HOH . D 4 HOH A 3 503 6 HOH HOH . D 4 HOH A 4 504 30 HOH HOH . D 4 HOH A 5 505 27 HOH HOH . D 4 HOH A 6 506 31 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 19 HOH HOH . D 4 HOH A 9 509 13 HOH HOH . D 4 HOH A 10 510 20 HOH HOH . D 4 HOH A 11 511 5 HOH HOH . D 4 HOH A 12 512 16 HOH HOH . D 4 HOH A 13 513 11 HOH HOH . D 4 HOH A 14 514 17 HOH HOH . D 4 HOH A 15 515 10 HOH HOH . D 4 HOH A 16 516 12 HOH HOH . D 4 HOH A 17 517 14 HOH HOH . D 4 HOH A 18 518 3 HOH HOH . D 4 HOH A 19 519 9 HOH HOH . D 4 HOH A 20 520 18 HOH HOH . D 4 HOH A 21 521 29 HOH HOH . D 4 HOH A 22 522 24 HOH HOH . D 4 HOH A 23 523 15 HOH HOH . D 4 HOH A 24 524 1 HOH HOH . D 4 HOH A 25 525 4 HOH HOH . D 4 HOH A 26 526 2 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 23 HOH HOH . D 4 HOH A 29 529 22 HOH HOH . D 4 HOH A 30 530 26 HOH HOH . D 4 HOH A 31 531 32 HOH HOH . D 4 HOH A 32 532 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 13.602 -22.129 -12.463 0.78 24.68 ? N SAH 402 A 1 HETATM 2 C CA SAH . . . C 3 13.59 -20.645 -12.401 0.78 29.63 ? CA SAH 402 A 1 HETATM 3 C CB SAH . . . C 3 14.954 -20.117 -11.95 0.78 32.15 ? CB SAH 402 A 1 HETATM 4 C CG SAH . . . C 3 14.894 -19.085 -10.866 0.78 34.02 ? CG SAH 402 A 1 HETATM 5 S SD SAH . . . C 3 16.47 -18.959 -10.004 0.78 21.07 ? SD SAH 402 A 1 HETATM 6 C C SAH . . . C 3 13.319 -20.148 -13.817 0.78 33.41 ? C SAH 402 A 1 HETATM 7 O O SAH . . . C 3 12.658 -19.108 -13.948 0.78 36.71 ? O SAH 402 A 1 HETATM 8 O OXT SAH . . . C 3 13.77 -20.834 -14.72 0.78 29.95 ? OXT SAH 402 A 1 HETATM 9 C C5' SAH . . . C 3 16.538 -20.489 -9.046 0.78 25.28 ? C5' SAH 402 A 1 HETATM 10 C C4' SAH . . . C 3 15.522 -20.566 -7.935 0.78 21.41 ? C4' SAH 402 A 1 HETATM 11 O O4' SAH . . . C 3 16.009 -21.453 -6.911 0.78 17.44 ? O4' SAH 402 A 1 HETATM 12 C C3' SAH . . . C 3 15.22 -19.243 -7.227 0.78 18.86 ? C3' SAH 402 A 1 HETATM 13 O O3' SAH . . . C 3 13.913 -18.785 -7.545 0.78 19.32 ? O3' SAH 402 A 1 HETATM 14 C C2' SAH . . . C 3 15.353 -19.557 -5.731 0.78 17.7 ? C2' SAH 402 A 1 HETATM 15 O O2' SAH . . . C 3 14.273 -19.06 -4.973 0.78 19.1 ? O2' SAH 402 A 1 HETATM 16 C C1' SAH . . . C 3 15.398 -21.08 -5.705 0.78 14.94 ? C1' SAH 402 A 1 HETATM 17 N N9 SAH . . . C 3 16.179 -21.618 -4.601 0.78 17.47 ? N9 SAH 402 A 1 HETATM 18 C C8 SAH . . . C 3 17.405 -21.181 -4.172 0.78 17.25 ? C8 SAH 402 A 1 HETATM 19 N N7 SAH . . . C 3 17.863 -21.85 -3.146 0.78 21.19 ? N7 SAH 402 A 1 HETATM 20 C C5 SAH . . . C 3 16.875 -22.784 -2.877 0.78 20.56 ? C5 SAH 402 A 1 HETATM 21 C C6 SAH . . . C 3 16.766 -23.792 -1.902 0.78 21.96 ? C6 SAH 402 A 1 HETATM 22 N N6 SAH . . . C 3 17.692 -24.033 -0.98 0.78 19.01 ? N6 SAH 402 A 1 HETATM 23 N N1 SAH . . . C 3 15.647 -24.551 -1.913 0.78 23.34 ? N1 SAH 402 A 1 HETATM 24 C C2 SAH . . . C 3 14.716 -24.304 -2.841 0.78 26.52 ? C2 SAH 402 A 1 HETATM 25 N N3 SAH . . . C 3 14.71 -23.387 -3.801 0.78 22.03 ? N3 SAH 402 A 1 HETATM 26 C C4 SAH . . . C 3 15.83 -22.65 -3.768 0.78 20.39 ? C4 SAH 402 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #