data_7OWL # _model_server_result.job_id vi6EpTQ0liw4f-ZqTkQJxw _model_server_result.datetime_utc '2024-10-19 14:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7owl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 7OWL # _exptl.entry_id 7OWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OWL _cell.length_a 76.486 _cell.length_b 77.631 _cell.length_c 216.881 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,M,N,O 1 1 D,E,F,J,K,L,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 7OWL _atom_sites.fract_transf_matrix[1][1] 0.013074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CTP A 1 201 1 CTP CTP . H 2 CTP B 1 201 2 CTP CTP . I 2 CTP C 1 201 3 CTP CTP . J 2 CTP D 1 201 4 CTP CTP . K 2 CTP E 1 201 5 CTP CTP . L 2 CTP F 1 201 6 CTP CTP . M 3 HOH A 1 301 11 HOH HOH . M 3 HOH A 2 302 9 HOH HOH . M 3 HOH A 3 303 3 HOH HOH . M 3 HOH A 4 304 1 HOH HOH . M 3 HOH A 5 305 16 HOH HOH . N 3 HOH B 1 301 18 HOH HOH . N 3 HOH B 2 302 7 HOH HOH . O 3 HOH C 1 301 26 HOH HOH . O 3 HOH C 2 302 6 HOH HOH . O 3 HOH C 3 303 23 HOH HOH . O 3 HOH C 4 304 13 HOH HOH . O 3 HOH C 5 305 28 HOH HOH . P 3 HOH D 1 301 20 HOH HOH . P 3 HOH D 2 302 22 HOH HOH . P 3 HOH D 3 303 27 HOH HOH . Q 3 HOH E 1 301 5 HOH HOH . Q 3 HOH E 2 302 21 HOH HOH . Q 3 HOH E 3 303 10 HOH HOH . Q 3 HOH E 4 304 15 HOH HOH . Q 3 HOH E 5 305 25 HOH HOH . R 3 HOH F 1 301 8 HOH HOH . R 3 HOH F 2 302 2 HOH HOH . R 3 HOH F 3 303 14 HOH HOH . R 3 HOH F 4 304 19 HOH HOH . R 3 HOH F 5 305 24 HOH HOH . R 3 HOH F 6 306 4 HOH HOH . R 3 HOH F 7 307 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . A . L 2 14.945 26.216 49.801 0.62 62.55 ? N1 CTP 201 F 1 HETATM 2 C C2 CTP . A . L 2 14.486 25.231 48.851 0.62 68.7 ? C2 CTP 201 F 1 HETATM 3 N N3 CTP . A . L 2 15.362 24.729 47.913 0.62 66.52 ? N3 CTP 201 F 1 HETATM 4 C C4 CTP . A . L 2 16.626 25.201 47.926 0.62 63.87 ? C4 CTP 201 F 1 HETATM 5 C C5 CTP . A . L 2 17.094 26.167 48.844 0.62 58.73 ? C5 CTP 201 F 1 HETATM 6 C C6 CTP . A . L 2 16.205 26.659 49.775 0.62 48.91 ? C6 CTP 201 F 1 HETATM 7 O O2 CTP . A . L 2 13.326 24.86 48.906 0.62 57.76 ? O2 CTP 201 F 1 HETATM 8 N N4 CTP . A . L 2 17.473 24.696 47.011 0.62 60.14 ? N4 CTP 201 F 1 HETATM 9 C C1' CTP . A . L 2 13.964 26.733 50.766 0.62 67.52 ? C1' CTP 201 F 1 HETATM 10 C C2' CTP . A . L 2 14.1 26.07 52.113 0.62 64.29 ? C2' CTP 201 F 1 HETATM 11 O O2' CTP . A . L 2 13.395 24.871 52.103 0.62 58.72 ? O2' CTP 201 F 1 HETATM 12 C C3' CTP . A . L 2 13.449 27.153 53.025 0.62 72.35 ? C3' CTP 201 F 1 HETATM 13 C C4' CTP . A . L 2 13.432 28.417 52.15 0.62 69.82 ? C4' CTP 201 F 1 HETATM 14 O O4' CTP . A . L 2 14.182 28.093 50.949 0.62 63.99 ? O4' CTP 201 F 1 HETATM 15 O O3' CTP . A . L 2 12.097 26.822 53.344 0.62 70.65 ? O3' CTP 201 F 1 HETATM 16 C C5' CTP . A . L 2 14.053 29.615 52.865 0.62 72.42 ? C5' CTP 201 F 1 HETATM 17 O O5' CTP . A . L 2 15.016 29.191 53.853 0.62 69.01 ? O5' CTP 201 F 1 HETATM 18 P PA CTP . A . L 2 16.481 28.753 53.464 0.62 71.42 ? PA CTP 201 F 1 HETATM 19 O O1A CTP . A . L 2 16.477 28.303 52.04 0.62 66.78 ? O1A CTP 201 F 1 HETATM 20 O O2A CTP . A . L 2 16.693 27.769 54.499 0.62 79.47 -1 O2A CTP 201 F 1 HETATM 21 O O3A CTP . A . L 2 17.383 30.027 53.66 0.62 53.83 ? O3A CTP 201 F 1 HETATM 22 P PB CTP . A . L 2 17.148 31.722 53.516 0.62 71.63 ? PB CTP 201 F 1 HETATM 23 O O1B CTP . A . L 2 17.264 31.51 52.1 0.62 75.29 ? O1B CTP 201 F 1 HETATM 24 O O2B CTP . A . L 2 15.812 31.687 54.293 0.62 87.41 -1 O2B CTP 201 F 1 HETATM 25 O O3B CTP . A . L 2 18.261 32.559 54.047 0.62 65.92 ? O3B CTP 201 F 1 HETATM 26 P PG CTP . A . L 2 18.46 34.316 54.269 0.62 90.35 ? PG CTP 201 F 1 HETATM 27 O O1G CTP . A . L 2 18.721 35.021 52.963 0.62 67.59 ? O1G CTP 201 F 1 HETATM 28 O O2G CTP . A . L 2 17.245 34.852 54.963 0.62 54.68 -1 O2G CTP 201 F 1 HETATM 29 O O3G CTP . A . L 2 19.621 34.398 55.214 0.62 66.01 -1 O3G CTP 201 F 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #